iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

UUCD2 ID

IUUC-Ath-007270

UUCD1 version

UUC-ArT-00563

Ensembl Protein ID

AT3G54790.1

UniProt Accession

Q8GWV5; Q9M1S1; PUB3_ARATH

Genbank Protein ID

CAB77599.1; AEE79287.1; ANM63723.1; BAC43212.1

Protein Name

U-box domain-containing protein 3; Plant U-box protein 3; RING-type E3 ubiquitin transferase PUB3

Genbank Nucleotide ID

AL138650; CP002686; CP002686; AK118613

Gene Name

PUB3; At3g54790; T5N23_150

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT3G54790	AT3G54790.1	AT3G54790.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	2.50e-29	102.1	238	310

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 2    vpeeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedlvPnltlrrliqawceenss 74
           +p++f+Cp+s elM dPv+++sG+t+dr+sI+kwl++g   cP trq lt+++l+Pn+t++++i +w+e+n++
   Q: 238  IPPYFRCPLSTELMLDPVIVASGQTFDRTSIKKWLDNGLAVCPRTRQVLTHQELIPNYTVKAMIASWLEANRI 310
           8********************************************************************9986 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

Functions as an E3 ubiquitin ligase.

Protein Sequence
(Fasta)

MDPVPVRCLL NSISRYLHLV ACQTIRFNPI QTCIGNMVLL LKLLKPLLDE VVDCKIPSDD 60
CLYKGCEDLD SVVNQAREFL EDWSPKLSKL FGVFQCEVLL GKVQTCSLEI SRILLQLSQS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATTATATATC ATCAGAAACA TAAAAAGAAA GAAAAAAGAG ACAGCTTTAA GATGTACCAA 60
CTCCAACATT ACAGAAACAG TAGAGATATC TGCAAAAAAA CCAACTTGGG GCCCCTCGCC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0025--Alternative splicing
KW-0175--Coiled coil
KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0808--Transferase
KW-0833--Ubl conjugation pathway

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR000225--Armadillo
IPR011987--ATPase_V1-cplx_hsu_C
IPR003613--Ubox_domain
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50176--ARM_REPEAT
PS51698--U_BOX

Pfam

PF00514--Arm
PF04564--U-box

SMART

SM00185--ARM
SM00504--Ubox

Gene Ontology

GO:0005737--C:cytoplasm
GO:0005634--C:nucleus
GO:0004842--F:ubiquitin-protein transferase activity

KEGG

ath:AT3G54790

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-005439	Arabidopsis lyrata	96.97	0.00e+00	1298.00
IUUC-Bol-015931	Brassica oleracea	84.05	0.00e+00	1126.00
IUUC-Bra-017191	Brassica rapa	84.33	0.00e+00	1106.00
IUUC-Gma-043908	Glycine max	40.72	4.00e-129	454.00
IUUC-Mtr-058671	Medicago truncatula	51.63	0.00e+00	669.00
IUUC-Pop-099351	Populus trichocarpa	56.84	0.00e+00	748.00
IUUC-Ppe-101535	Prunus persica	55.68	0.00e+00	682.00
IUUC-Sly-111511	Solanum lycopersicum	48.79	1.00e-158	553.00
IUUC-Stu-112793	Solanum tuberosum	49.69	1.00e-171	596.00
IUUC-Tca-121486	Theobroma cacao	56.44	0.00e+00	741.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence