iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Details
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Oin-079734

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

RING-type E3 ubiquitin transferase

Genbank Nucleotide ID

CM000127

Gene Name

OsI_07564

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
BGIOSGA006299	BGIOSGA006299-TA	BGIOSGA006299-PA

Status

Reviewed

Details

Family	Domain	References (PMIDs)
E3 activity/RING/U-box	U-box	24486490

Classification

Family	E-value	Score	Start	End
E3 activity/RING/U-box	1.60e-32	112.4	7	88

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 1    evpeeflCpIslelMrdPvvlpsGitydrssIekwlasggk......tcPvtrqpl..teedlvPnltlrrliqawceenss 74
           evp++flCpIsle+MrdPv+l++GitydrssIe+w+  gg       tcPvtr++l  +e++ +Pn+tlrrliqawc+++++
   Q: 7    EVPSYFLCPISLEIMRDPVTLATGITYDRSSIERWMFGGGGgdggkgTCPVTRRQLapAEREATPNHTLRRLIQAWCAAHAV 88
           69**********************************77776677778*********8778888***************9986 PP

Organism

Oryza indica

Protein Sequence
(Fasta)

MEVAAAEVPS YFLCPISLEI MRDPVTLATG ITYDRSSIER WMFGGGGGDG GKGTCPVTRR 60
QLAPAEREAT PNHTLRRLIQ AWCAAHAVER FPTPRPPVDS CRVAALVDEG TTTMLGGGGR 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGAGGTGG CGGCGGCGGA GGTGCCGTCC TACTTCCTGT GCCCGATCTC GCTGGAGATC 60
ATGAGGGACC CGGTGACGCT GGCGACGGGG ATCACCTACG ACCGGAGCAG CATCGAGCGG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0808--Transferase

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR003613--Ubox_domain
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS51698--U_BOX

Pfam

PF04564--U-box

SMART

SM00504--Ubox

Gene Ontology

GO:0004842--F:ubiquitin-protein transferase activity

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000639	Aegilops tauschii	71.66	3.00e-136	477.00
IUUC-Atr-002430	Amborella trichopoda	40.50	3.00e-83	301.00
IUUC-Aly-006194	Arabidopsis lyrata	43.61	2.00e-94	338.00
IUUC-Ath-007272	Arabidopsis thaliana	42.92	1.00e-89	322.00
IUUC-Bdi-014627	Brachypodium distachyon	71.59	2.00e-143	501.00
IUUC-Bol-015755	Brassica oleracea	45.56	2.00e-103	368.00
IUUC-Bra-016841	Brassica rapa	45.33	4.00e-104	370.00
IUUC-Gma-043521	Glycine max	44.52	3.00e-98	351.00
IUUC-Hvu-047293	Hordeum vulgare	70.86	1.00e-132	465.00
IUUC-Kpa-049171	Komagataella pastoris	35.71	3.20e+00	25.80
IUUC-Lpe-051695	Leersia perrieri	69.91	4.00e-121	427.00
IUUC-Mtr-058052	Medicago truncatula	45.52	6.00e-107	380.00
IUUC-Mac-065005	Musa acuminata	45.79	4.00e-90	324.00
IUUC-Oba-075115	Oryza barthii	85.64	2.00e-104	371.00
IUUC-Ogu-079030	Oryza glumaepatula	99.77	1.00e-167	581.00
IUUC-Ome-081360	Oryza meridionalis	91.78	4.00e-159	553.00
IUUC-Oni-082818	Oryza nivara	99.55	3.00e-170	590.00
IUUC-Opu-083355	Oryza punctata	89.64	2.00e-165	574.00
IUUC-Oru-085239	Oryza rufipogon	99.55	9.00e-168	582.00
IUUC-Osa-086041	Oryza sativa	99.77	1.00e-167	581.00
IUUC-Pop-099305	Populus trichocarpa	46.70	5.00e-104	370.00
IUUC-Ppe-102059	Prunus persica	45.68	9.00e-105	372.00
IUUC-Sit-110734	Setaria italica	74.02	4.00e-144	503.00
IUUC-Sly-111579	Solanum lycopersicum	45.43	3.00e-96	344.00
IUUC-Stu-112238	Solanum tuberosum	44.52	1.00e-105	375.00
IUUC-Sbi-114657	Sorghum bicolor	72.64	1.00e-143	501.00
IUUC-Tca-121107	Theobroma cacao	45.56	5.00e-102	363.00
IUUC-Tae-123828	Triticum aestivum	70.52	2.00e-137	481.00
IUUC-Tur-125965	Triticum urartu	66.06	4.00e-132	463.00
IUUC-Vvi-131012	Vitis vinifera	47.49	1.00e-106	379.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence