iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

UUCD2 ID

IUUC-Ath-006704

UUCD1 version

UUC-ArT-01276

Ensembl Protein ID

AT3G47820.1

UniProt Accession

Q9STT1; Q8RWZ2; PUB39_ARATH

Genbank Protein ID

CAB41865.1; AEE78334.1; AAM14040.1; AAV85710.1

Protein Name

U-box domain-containing protein 39; Plant U-box protein 39; RING-type E3 ubiquitin transferase PUB39

Genbank Nucleotide ID

AL049746; CP002686; AY091018; BT020355

Gene Name

PUB39; At3g47820; T23J7.150

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT3G47820	AT3G47820.1	AT3G47820.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	1.70e-18	67.3	32	104

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 2    vpeeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedlvPnltlrrliqawceenss 74
           +p eflCpI++ lM+dPvv++sG+t++r s++ + + +      ++++ + ++++Pnl+++++i +wc++n+ 
   Q: 32   TPTEFLCPITGFLMSDPVVVASGQTFERISVQVCRNLSFAPKLHDGTQPDLSTVIPNLAMKSTILSWCDRNKM 104
           799*************************************9999**************************985 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

Functions as an E3 ubiquitin ligase.

Protein Sequence
(Fasta)

MGDTGRHKWF SFHHHRSASA TTMPQHNSPG ETPTEFLCPI TGFLMSDPVV VASGQTFERI 60
SVQVCRNLSF APKLHDGTQP DLSTVIPNLA MKSTILSWCD RNKMEHPRPP DYAYVEGVVR 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GTATCAGTTA TCAAACCAGA GAGAATCTTT TAGACTCGAT CAAACAAAGA CCTTCCATTA 60
CAAAACCTCA AAAGTTGAAG TCAATAAAAA TCTCTTACAA CCACAACAAC TTCTCAGATT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0808--Transferase
KW-0833--Ubl conjugation pathway

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR000225--Armadillo
IPR003613--Ubox_domain

PROSITE

PS50176--ARM_REPEAT
PS51698--U_BOX

Pfam

PF00514--Arm
PF04564--U-box

SMART

SM00185--ARM
SM00504--Ubox

Gene Ontology

GO:0005737--C:cytoplasm
GO:0005634--C:nucleus
GO:0004842--F:ubiquitin-protein transferase activity

KEGG

ath:AT3G47820

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-005903	Arabidopsis lyrata	96.09	0.00e+00	834.00
IUUC-Bol-015684	Brassica oleracea	85.45	0.00e+00	726.00
IUUC-Mac-065667	Musa acuminata	34.97	1.00e-43	169.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence