iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

UUCD2 ID

IUUC-Ath-007240

UUCD1 version

UUC-ArT-00715

Ensembl Protein ID

AT5G12310.1

UniProt Accession

Q94CL1; Q94CL1_ARATH

Genbank Protein ID

AAM51588.1; AED91790.1; BAC42369.1; CAC42892.1

Protein Name

AT5g19430/F7K24_180; Putative RING finger; RING finger-like protein; RING/U-box superfamily protein

Genbank Nucleotide ID

AY116954; CP002688; AK117718; AL592312

Gene Name

At5g12310

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT5G12310	AT5G12310.1	AT5G12310.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
Protein Expression/Proteomics

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	1.70e-06	29.3	43	86

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledf..kdgplvlpCgHvfhadClqkwpglknssskefrCPlCr 46
           CaiCl+ +  ++  +v +C H+++ +C+ +w     s + + +CP C+
   Q: 43   CAICLDTIplQETAMVKGCEHAYCVTCILRW----ASYKEKPTCPQCK 86
           ******776666588999*************....8889999*****6 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MSSSIQIVVE EKQVDVLPLQ DQDEKKTPQV FNELSFGNHG GCCAICLDTI PLQETAMVKG 60
CEHAYCVTCI LRWASYKEKP TCPQCKLPFD FLNVHRALDG SVEDFMFEES VCLLLRASWF 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATTTTAGTTA TTGTACTCTT TATCTACTTC ATATCTAAAT AAAATAAATA AATAAAACAT 60
TAAAGTATAC ATTTTTTGAG CACCGCATAA ATATTAATTT TATTTTGGGT CGCCGCTTGA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR018957--Znf_C3HC4_RING-type
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD
IPR017907--Znf_RING_CS

PROSITE

PS00518--ZF_RING_1
PS50089--ZF_RING_2

Pfam

PF00097--zf-C3HC4

SMART

SM00184--RING

Gene Ontology

GO:0008270--F:zinc ion binding

KEGG

ath:AT5G12310

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002853	Amborella trichopoda	55.56	3.00e-42	164.00
IUUC-Aly-006143	Arabidopsis lyrata	92.55	5.00e-100	356.00
IUUC-Bdi-014704	Brachypodium distachyon	58.22	5.00e-45	173.00
IUUC-Bol-015356	Brassica oleracea	79.19	6.00e-79	286.00
IUUC-Cre-022875	Chlamydomonas reinhardtii	65.38	3.00e-27	112.00
IUUC-Cho-024396	Choloepus hoffmanni	36.36	9.00e-07	49.30
IUUC-Cme-027236	Cyanidioschyzon merolae	35.80	2.00e-08	51.60
IUUC-Hsa-046200	Homo sapiens	36.07	3.00e-07	46.20
IUUC-Lpe-050939	Leersia perrieri	61.01	8.00e-51	192.00
IUUC-Oba-075008	Oryza barthii	59.06	6.00e-48	183.00
IUUC-Obr-076867	Oryza brachyantha	58.82	8.00e-49	186.00
IUUC-Ogl-077681	Oryza glaberrima	59.73	1.00e-48	185.00
IUUC-Ogu-078356	Oryza glumaepatula	59.73	1.00e-48	185.00
IUUC-Oin-079949	Oryza indica	59.73	1.00e-48	185.00
IUUC-Olo-080990	Oryza longistaminata	59.06	1.00e-47	182.00
IUUC-Ome-081618	Oryza meridionalis	60.90	1.00e-48	185.00
IUUC-Oni-082491	Oryza nivara	59.73	1.00e-48	185.00
IUUC-Opu-083979	Oryza punctata	57.05	2.00e-46	178.00
IUUC-Osa-085324	Oryza sativa	59.73	1.00e-48	185.00
IUUC-Olu-087720	Ostreococcus lucimarinus	36.13	2.00e-13	68.90
IUUC-Pop-099205	Populus trichocarpa	53.39	1.00e-56	212.00
IUUC-Ppe-101850	Prunus persica	60.69	3.00e-53	201.00
IUUC-Sit-110148	Setaria italica	56.77	4.00e-46	177.00
IUUC-Sly-110879	Solanum lycopersicum	63.23	3.00e-52	197.00
IUUC-Stu-112540	Solanum tuberosum	62.58	4.00e-52	197.00
IUUC-Sbi-114796	Sorghum bicolor	58.94	4.00e-40	157.00
IUUC-Tca-121633	Theobroma cacao	58.46	2.00e-55	207.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence