iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Zma-135463

Ensembl Protein ID

Zm00001d037326_T001

UniProt Accession

B6TB61; B6TB61_MAIZE

Genbank Protein ID

ACG34344.1; AQK83618.1; AQK83619.1

Protein Name

DNA repair protein RAD23; Ubiquitin receptor RAD23c

Genbank Nucleotide ID

EU962226; CM000782; CM000782

Gene Name

ZEAMMB73_Zm00001d037326

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Zm00001d037326	Zm00001d037326_T001	Zm00001d037326_T001

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
UBD/Alpha-Helix/UBA	3.90e-21	76.5	157	198
ULD/UDP/UBQ/UBQ_PIM	1.40e-23	84.6	1	78

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

UBD/Alpha-Helix/UBA

   S: 3    dedkleqlveMG...FdreealqaLraannnleaAveyLldg 41
           +e+ ++q+ +MG   ++r ++++aLraa+nn+e+A++yL++g
   Q: 157  LEQTIQQILDMGggtWERGTVVRALRAAYNNPERAIDYLYSG 198
           589************************************986 PP

ULD/UDP/UBQ/UBQ_PIM

   S: 1    mkltvktlkgkefelevseddtveelKekiakesg...vppeqqkLIyaGkiLkDdttLselgikdgsvvhlvvkksk 75
           mkl+vktlkg++fe+e+s+d +v+e+K  i++ +g   +p++qq LIy+GkiLkD+ttL+++g+ ++s+++++++k+k
   Q: 1    MKLNVKTLKGTNFEIEASPDASVAEVKRIIETTQGqstYPADQQMLIYQGKILKDETTLESNGVAENSFLVIMLSKAK 78
           99*************************************************************************987 PP

Organism

Zea mays

Protein Sequence
(Fasta)

MKLNVKTLKG TNFEIEASPD ASVAEVKRII ETTQGQSTYP ADQQMLIYQG KILKDETTLE 60
SNGVAENSFL VIMLSKAKAS SSGASTATAA KAPATPAQPA APATSVVRTP TQAPVATAET 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AGTCTACCTA GTGGAGCTCC AGCGCCTCGT CACCACTGTC CACTCCCGCC TGCCTCCCAC 60
CGATCCGAAC CTGCCCCTTT CACTAATGCT GAGGGTCTAT CTGTCGCGAC CCCACGGGAC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0675--Receptor
KW-1185--Reference proteome

Interpro

IPR004806--Rad23
IPR006636--STI1_HS-bd
IPR015940--UBA
IPR009060--UBA-like
IPR029071--Ubiquitin-rel_dom
IPR000626--Ubiquitin_dom
IPR015360--XPC-bd

PROSITE

PS50030--UBA
PS50053--UBIQUITIN_2

Pfam

PF00627--UBA
PF00240--ubiquitin
PF09280--XPC-binding

PRINTS

PR01839--RAD23PROTEIN

SMART

SM00727--STI1
SM00165--UBA
SM00213--UBQ

Gene Ontology

GO:0005634--C:nucleus
GO:0003684--F:damaged DNA binding
GO:0006289--P:nucleotide-excision repair
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process

KEGG

zma:100282762

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-005486	Arabidopsis lyrata	61.75	5.00e-101	360.00
IUUC-Ath-006688	Arabidopsis thaliana	59.50	1.00e-95	342.00
IUUC-Ago-007830	Ashbya gossypii	26.47	1.00e-15	77.40
IUUC-Bol-015354	Brassica oleracea	59.31	3.00e-100	358.00
IUUC-Cne-027056	Cryptococcus neoformans	39.74	1.00e-11	63.50
IUUC-Hvu-047788	Hordeum vulgare	75.10	4.00e-71	261.00
IUUC-Lpe-050801	Leersia perrieri	78.85	1.00e-95	342.00
IUUC-Mvi-060220	Microbotryum violaceum	43.57	3.00e-21	96.30
IUUC-Mac-065180	Musa acuminata	68.99	6.00e-90	323.00
IUUC-Ncr-068685	Neurospora crassa	36.25	5.00e-28	118.00
IUUC-Oba-075951	Oryza barthii	80.53	1.00e-102	366.00
IUUC-Ogl-077152	Oryza glaberrima	80.53	1.00e-102	366.00
IUUC-Ogu-078896	Oryza glumaepatula	80.53	1.00e-102	366.00
IUUC-Oin-079845	Oryza indica	80.53	1.00e-102	366.00
IUUC-Ome-081953	Oryza meridionalis	80.38	9.00e-96	343.00
IUUC-Oni-082569	Oryza nivara	80.53	1.00e-102	366.00
IUUC-Opu-083655	Oryza punctata	77.10	5.00e-98	350.00
IUUC-Oru-084989	Oryza rufipogon	80.53	1.00e-102	366.00
IUUC-Osa-085709	Oryza sativa	80.53	1.00e-102	366.00
IUUC-Ppe-101830	Prunus persica	59.15	3.00e-106	378.00
IUUC-Ptt-103717	Puccinia triticina	47.01	1.00e-24	106.00
IUUC-Sbi-114835	Sorghum bicolor	93.14	3.00e-140	490.00
IUUC-Tca-121661	Theobroma cacao	64.34	4.00e-82	297.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence