iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-100034

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

STOMATAL CYTOKINESIS-DEFECTIVE 1 family protein

Genbank Nucleotide ID

CM000348

Gene Name

POPTRDRAFT_823307; POPTR_0012s05780g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0012s05780	POPTR_0012s05780.1	POPTR_0012s05780.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	9.90e-32	108.7	940	977
UBD/Beta-Prp	1.40e-63	215.9	839	1033

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sdtllvsGsdDgtikvWDlrtgvllk 37
           gH + v++++  s+ +++++++Dgt+k+WD+rt++++ 
   Q: 940  GHDAQVSSVRMlSGERVLTAAHDGTVKMWDVRTDTCVA 977
           89********98889********************985 PP

UBD/Beta-Prp

   S: 45   lrslsgheaevtavkfspdgk............ilvtgseDrtikvwdls..tgkcvhtlkghedsvlslsfspsgdklvsGshdrtir 119
           +r l gh+++vtav +  +++            ++++gs+D ++k+wd+s   ++   tlkgh+++v+s+s+++   k+vsGs+d+ + 
   Q: 839  VRILRGHSGAVTAVHCVTRREvwdlvgdredagFFISGSTDCMVKIWDPSirGSELRATLKGHTRTVRSISSDR--GKVVSGSDDQSVI 925
           677888888866666655555555666666668**************77666**********************..************* PP
   S: 120  vwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsngkelvsgsldgtvklwd 208
           vwd +t q le  l+ghd+ v++v++ + g  + +++ D+tv++Wd++t++++ t      ++v ++++d++   l+++++d   ++wd
   Q: 926  VWDKQTSQLLE-ELKGHDAQVSSVRMLS-GERVLTAAHDGTVKMWDVRTDTCVATVGR-CSSAVLCMEYDDSTGILAAAGRDAVANIWD 1011
           **********9.**************99.99*************************66.99**************************** PP
   S: 209  lqtgecvrtlnghtdnvksvrf 230
           +++g+ +++l ght++++s+r+
   Q: 1012 IRAGRQMHKLLGHTKWIRSIRM 1033
           *******************997 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MGRLFEYFVV CGLGPEMRTV DRNKGYHGMR VFYQSSLLDQ YPPDNHSLYP PPPPQLPICV 60
LPAGVQFYPS GFDADDSSTF PRSYPIVLTE GDGSKIYVSC IAFRDPVSED IAEAYRIPAN 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GTAATGAAAT AATCAGAAGC CAAGCGAAAA TTGTGTTGAA GAAAGATGGG AAGGCTGTTC 60
GAGTATTTCG TAGTGTGTGG GTTGGGTCCG GAGATGAGAA CGGTGGATAG AAACAAAGGA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR005112--dDENN_dom
IPR001194--DENN_dom
IPR020472--G-protein_beta_WD-40_rep
IPR005113--uDENN_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS50947--DDENN
PS50211--DENN
PS50946--UDENN
PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF02141--DENN
PF03456--uDENN
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00801--dDENN
SM00799--DENN
SM00800--uDENN
SM00320--WD40

KEGG

pop:POPTR_0012s05780g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002593	Amborella trichopoda	78.37	0.00e+00	1823.00
IUUC-Hvu-047377	Hordeum vulgare	83.54	3.00e-162	563.00
IUUC-Mtr-058651	Medicago truncatula	79.21	0.00e+00	1917.00
IUUC-Olu-087744	Ostreococcus lucimarinus	32.30	2.00e-42	167.00
IUUC-Ppa-095259	Physcomitrella patens	53.54	0.00e+00	1293.00
IUUC-Ppe-101883	Prunus persica	79.55	0.00e+00	1568.00
IUUC-Sja-107764	Schizosaccharomyces japonicus	25.76	4.00e-24	106.00
IUUC-Sre-114916	Sporisorium reilianum	26.40	3.00e-20	93.60

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence