| DNA & RNA Element - RepTar |
| Gene Name | miRNA | Begin | End | Profile |
| Tom1l1 | mmu-miR-710 | beg:422 | end:439 | pic:3' GAGTTGAGAGGGGTTCTGAACC 5'& .||. |||||||| &5' ----GCTTGA---AAGACTTG- 3' |
| Tom1l1 | mmu-miR-328 | beg:7 | end:18 | pic:3' TGCCTTCCCGTCTCTCCCGGTC 5'& |||||||| &5' --------------AGGGCCAG 3' |
| Tom1l1 | mmu-miR-33 | beg:569 | end:587 | pic:3' ACGTTACGTTGA--TGTTACGTG 5'& |||| ||||||||. &5' --------AACTGGACAATGCAT 3' |
| Tom1l1 | mghv-miR-M1-1 | beg:83 | end:96 | pic:3' TTTCCTTCATGCC-GGTAAAGAT 5'& || |||||||| &5' -----------GGACCATTTCT- 3' |
| Tom1l1 | mmu-miR-1941-3p | beg:475 | end:493 | pic:3' TACCCTCTATGACGATTCTAC 5'& ||.|. |||||||| &5' -----AGGTGGC-CTAAGATG 3' |
| Tom1l1 | mmu-miR-1971 | beg:344 | end:360 | pic:3' AGAGTCGGGTCGGAAATG 5'& | ||. |||||||. &5' --TGAGT---GCCTTTAT 3' |
| Tom1l1 | mmu-miR-1981 | beg:344 | end:360 | pic:3' CGGTGCAGATTCGGGTCGGAAATG 5'& |.||. |||||||. &5' --------TGAGT---GCCTTTAT 3' |
| Tom1l1 | mmu-miR-684 | beg:557 | end:576 | pic:3' AACTGAACTTCCCTTTTGA 5'& ||||| |||||||| &5' -TGACTCTT--GGAAAACT 3' |
| Tom1l1 | mmu-miR-323-3p | beg:496 | end:513 | pic:3' TCTCCAGCTGGCACATTACAC 5'& ||| | |||||||| &5' ----GTC--CTATGTAATGT- 3' |
| Tom1l1 | mmu-miR-873 | beg:136 | end:153 | pic:3' TCCTCTGAGTGTT--CAAGGACG 5'& ||| ||||||| &5' --------CACTGCTGTTCCTG- 3' |
| Tom1l1 | mcmv-miR-m22-1 | beg:322 | end:336 | pic:3' ACCGGAGCCATGCCTGCCCCTT 5'& || ||.|||||| &5' ----------ACAGATGGGGAA 3' |
| Tom1l1 | mcmv-miR-m59-1 | beg:128 | end:147 | pic:3' GACTGCCAGCTCCGTGACGATT 5'& |||.| |||||||. &5' CTGGCCAA-----CACTGCTG- 3' |
| Tom1l1 | mcmv-miR-M87-1 | beg:138 | end:162 | pic:3' CGACGGCGACGGCTGCCGACGGA 5'& ||||.|.| |.||| ||||| &5' -CTGCTGTTCCTGACAA-TGCCT 3' |
| Tom1l1 | mghv-miR-M1-8 | beg:344 | end:354 | pic:3' CTGGTTTGGGGGTCACTCACGA 5'& ||||||| &5' --------------TGAGTGC- 3' |
| Tom1l1 | mmu-let-7g | beg:209 | end:233 | pic:3' TTGACATGTTTGATGATGGAGT 5'& ||||| .|||||.. ||| &5' AACTGGTTAAACTGTGGACTC- 3' |
| Tom1l1 | mmu-miR-101astar | beg:343 | end:368 | pic:3' CGTAGTCGTGACACT--ATTGACT 5'& || || | ||||||| &5' --ATGAGTGCCTTTATTTAACTGA 3' |
| Tom1l1 | mmu-miR-1193 | beg:476 | end:488 | pic:3' CTATCATTTTGCCCACTGGAT 5'& ||||.|||| &5' ------------GGTGGCCTA 3' |
| Tom1l1 | mmu-miR-1 | beg:500 | end:523 | pic:3' TATGTATGAAGAAATGTAAGGT 5'& ||..|| .|| ||||||. &5' -TATGTAATGTTTAACATTCT- 3' |
| Tom1l1 | mmu-miR-124 | beg:335 | end:357 | pic:3' CCGTAAGTGGCGCACGGAAT 5'& || .| ||||||| &5' GGAAGAAAATGAGTGCCTT- 3' |
| Tom1l1 | mmu-miR-130a | beg:347 | end:373 | pic:3' TACGGGA--AAATTGTAACGT-GAC 5'& .||||.| |||||| || ||| &5' GTGCCTTTATTTAAC--TGAATCTG 3' |
| Tom1l1 | mmu-miR-130b | beg:372 | end:395 | pic:3' TACGGGA-AAGTAGTAACGTGAC 5'& |||. |||| |||.||| &5' ATGTACAATTCAGT-TTGTACT- 3' |
| Tom1l1 | mmu-miR-136 | beg:268 | end:288 | pic:3' GGTAGTAGTTTTGT--TTACCTCA 5'& ||.| | .||||.|| &5' -------CAGATCTATGATGGGGT 3' |
| Tom1l1 | mmu-miR-136 | beg:314 | end:335 | pic:3' GGTAGTAGTTTTGTTTACCTCA 5'& .|| | |||||.||||.| &5' -TATTGT--AAACAGATGGGG- 3' |
| Tom1l1 | mmu-miR-145 | beg:558 | end:580 | pic:3' TCCCTAAGGACCCTTTTGACCTG 5'& || ||.| |||||||||||| &5' ---GACTCTT-GGAAAACTGGAC 3' |
| Tom1l1 | mmu-miR-145 | beg:88 | end:105 | pic:3' TCCCTAAGGACCCTTTTGACCTG 5'& |||.|| .||||| &5' ----ATTTCTCT----GCTGGA- 3' |
| Tom1l1 | mmu-miR-154 | beg:470 | end:488 | pic:3' GCTTCCGTTGTGCCTATTGGAT 5'& ||| || || |..|||| &5' -----GCATCA-GG-TGGCCTA 3' |
| Tom1l1 | mmu-miR-15a | beg:128 | end:149 | pic:3' GTGTTTGGTAATACACGACGAT 5'& | .||| |||||.| &5' --CTGGCCAACAC-TGCTGTT- 3' |
| Tom1l1 | mmu-miR-15astar | beg:470 | end:487 | pic:3' ACTCCGTCGT-GTCATACCGGAC 5'& ||| ||| .|||||| &5' -------GCATCAG-GTGGCCT- 3' |
| Tom1l1 | mmu-miR-15b | beg:130 | end:149 | pic:3' ACATTTGGTACTACACGACGAT 5'& ..||| |||||.| &5' ----GGCCAACAC-TGCTGTT- 3' |
| Tom1l1 | mmu-miR-16 | beg:131 | end:149 | pic:3' GCGGTTATAAATGCACGACGAT 5'& ||||| || |||||.| &5' -GCCAAC----AC-TGCTGTT- 3' |
| Tom1l1 | mmu-miR-181a | beg:360 | end:378 | pic:3' TGAGTGGCTGTCGCAACTTACAA 5'& ||.|| ||||||| &5' ----ACTGAATC---TGAATGT- 3' |
| Tom1l1 | mmu-miR-181b | beg:360 | end:378 | pic:3' TGGGTGGCTGTCGTTACTTACAA 5'& ||.|| ||||||| &5' ----ACTGAATC---TGAATGT- 3' |
| Tom1l1 | mmu-miR-181c | beg:360 | end:378 | pic:3' TGAGTGGCTGTCCAACTTACAA 5'& ||.|| ||||||| &5' ----ACTGAATC--TGAATGT- 3' |
| Tom1l1 | mmu-miR-181d | beg:360 | end:378 | pic:3' TGGGTGGCTGTTGTTACTTACAA 5'& ||.|| ||||||| &5' ----ACTGAATC---TGAATGT- 3' |
| Tom1l1 | mmu-miR-1898 | beg:25 | end:40 | pic:3' CTAGGGGACACTTG-GAACTGGA 5'& |||. |||||.| &5' ----------GAATACTTGATC- 3' |
| Tom1l1 | mmu-miR-1907 | beg:125 | end:150 | pic:3' TGGAGGTCTAGGA---GACGACGAG 5'& ||.||| |. || ||||||.|| &5' ACTTCCTGG-CCAACACTGCTGTTC 3' |
| Tom1l1 | mmu-miR-1928 | beg:475 | end:498 | pic:3' CTCGACCG----TTACATCGA 5'& || |||| .||||||.| &5' -AGGTGGCCTAAGATGTAGTT 3' |
| Tom1l1 | mmu-miR-1941-3p | beg:278 | end:298 | pic:3' TACCCTCTATGACGATTCTAC 5'& ||||| .|||| .|||||| &5' ATGGG--GTACT-TTAAGAT- 3' |
| Tom1l1 | mmu-miR-1948 | beg:184 | end:203 | pic:3' GACATGCTCACGA-GACGGATTT 5'& ||| |||||||.| &5' ------GAGGAAAACTGCCTAGA 3' |
| Tom1l1 | mmu-miR-1950 | beg:477 | end:496 | pic:3' ACTGGTATAGGAATCTACGTCT 5'& .|. ||| |||||.|| &5' -----GTGGCCTAAGATGTAG- 3' |
| Tom1l1 | mmu-miR-1952 | beg:323 | end:344 | pic:3' GTCTTCCTCCCACC-TCT 5'& |||| ||.| || ||| &5' CAGATGGGGAAAGGAAGA 3' |
| Tom1l1 | mmu-miR-196a | beg:182 | end:202 | pic:3' GGGTTGTTGTACT----TTGATGGAT 5'& .||| ||||.|||| &5' ---------GTGAGGAAAACTGCCTA 3' |
| Tom1l1 | mmu-miR-196b | beg:185 | end:202 | pic:3' GGGTTGTTGTCC-TTTGATGGAT 5'& ||| |||||.|||| &5' ---------AGGAAAACTGCCTA 3' |
| Tom1l1 | mmu-miR-199a-3p | beg:129 | end:148 | pic:3' ATTGGTTACACGTCTGATGACA 5'& |..|||| |||.|||| &5' TGGCCAAC------ACTGCTGT 3' |
| Tom1l1 | mmu-miR-199b | beg:129 | end:148 | pic:3' ATTGGTTACACGTCTGATGACA 5'& |..|||| |||.|||| &5' TGGCCAAC------ACTGCTGT 3' |
| Tom1l1 | mmu-miR-2134 | beg:470 | end:492 | pic:3' CGTGGGGCAAAGGGTTCTG 5'& |||.| || ||.||||. &5' GCATCAGGTGGCCTAAGAT 3' |
| Tom1l1 | mmu-miR-2135 | beg:155 | end:171 | pic:3' CAAAGCCGGGGTTCTGGAGA 5'& |||. ||||.|| &5' ------GCCTTGAGACTTC- 3' |
| Tom1l1 | mmu-miR-2141 | beg:121 | end:133 | pic:3' TTGAAAAGACTGTGGAGGA 5'& ||||.|||| &5' ----------ACACTTCCT 3' |
| Tom1l1 | mmu-miR-21star | beg:130 | end:149 | pic:3' CTGTCGGGTAGCTGACGACAAC 5'& .||| | ||||||||| &5' ---GGCCAA-C-ACTGCTGTT- 3' |
| Tom1l1 | mmu-miR-222 | beg:476 | end:498 | pic:3' TGGGTCATCGG--TCTACATCGA 5'& .||.||| ||||||||.| &5' ----GGTGGCCTAAGATGTAGTT 3' |
| Tom1l1 | mmu-miR-26a | beg:24 | end:38 | pic:3' TCGGATAGGACCTAATGAACTT 5'& ||| ||||||| &5' ----------GGAATACTTGA- 3' |
| Tom1l1 | mmu-miR-26a | beg:411 | end:432 | pic:3' TCGGATAGGACCTAATGAACTT 5'& .|..|| |||.|||||| &5' GGTTTAGA----ATTGCTTGAA 3' |
| Tom1l1 | mmu-miR-26b | beg:18 | end:38 | pic:3' TGGATAGGACTTAATGAACTT 5'& .||| ||| ||||||| &5' -TCTAAAG-GAA-TACTTGA- 3' |
| Tom1l1 | mmu-miR-26b | beg:412 | end:432 | pic:3' TGGATAGGACTTAATGAACTT 5'& .|. |||||.|||||| &5' ----GTTTAGAATTGCTTGAA 3' |
| Tom1l1 | mmu-miR-290-3p | beg:280 | end:293 | pic:3' CCCGAATTTTGATCCGCCGTGAAA 5'& || ||.||||| &5' -------------GG-GGTACTTT 3' |
| Tom1l1 | mmu-miR-292-3p | beg:272 | end:293 | pic:3' TGTGAGTTTTGGACCGCCGTGAAA 5'& || ||| ||.||||| &5' ----TCTATGA-TGG-GGTACTTT 3' |
| Tom1l1 | mmu-miR-299 | beg:222 | end:237 | pic:3' TTCGCCAAATGGCAGGGTGTAT 5'& |.|| | ||..|||| &5' --GTGGA----C-TCTTACAT- 3' |
| Tom1l1 | mmu-miR-30e | beg:381 | end:403 | pic:3' GAAGGTCAGTTCCT-ACAAATGT 5'& |.||||. ||||||.| &5' --TTCAGTTTGTACTTGTTTATA 3' |
| Tom1l1 | mmu-miR-31 | beg:506 | end:528 | pic:3' GTCGATACGGTC-GT-AGAACGGA 5'& |||.. || |||||||| &5' -----ATGTTTAACATTCTTGCCT 3' |
| Tom1l1 | mmu-miR-338-3p | beg:84 | end:105 | pic:3' GTTGTTTTAGTGACTACGACCT 5'& .|| | || | ||||||| &5' -GACCATTTCTC---TGCTGGA 3' |
| Tom1l1 | mmu-miR-33star | beg:233 | end:252 | pic:3' CACTACGTGACACCTTTGTAAC 5'& ||.|||| |..||||| &5' ------CATTGTGCAGGCATTG 3' |
| Tom1l1 | mmu-miR-343 | beg:62 | end:78 | pic:3' AGACCCGTGTACTTCCCTCT 5'& || || ||||||| &5' -----GC-CAAC-AGGGAGA 3' |
| Tom1l1 | mmu-miR-3473 | beg:8 | end:25 | pic:3' CCGACTCGGTAGAGAGGT 5'& |.|||| |||||.| &5' ----GGGCCAGCTCTCTA 3' |
| Tom1l1 | mmu-miR-34c | beg:128 | end:146 | pic:3' CGTTAGTCGATTGA-TGTGACGGA 5'& ||..| |||||||. &5' --------CTGGCCAACACTGCT- 3' |
| Tom1l1 | mmu-miR-383 | beg:536 | end:553 | pic:3' TCGGTGTCAGTGGAAGACTAGA 5'& |||| |||||||.| &5' --------TCACATTCTGATTT 3' |
| Tom1l1 | mmu-miR-432 | beg:154 | end:175 | pic:3' GACGGGTGACTAGATGAGGTTCT 5'& ||||. ||| |||.||.|| &5' -TGCCT--TGAG--ACTTCAGGA 3' |
| Tom1l1 | mmu-miR-449a | beg:123 | end:146 | pic:3' TGGTCGATTGTTATGTGACGGT 5'& ||. ||..| |||||||. &5' ACTTCCTGGCCA-ACACTGCT- 3' |
| Tom1l1 | mmu-miR-449b | beg:128 | end:146 | pic:3' CGGTCGATTGTTGTGACGGA 5'& | || |||||||||. &5' -CTGGC---CAACACTGCT- 3' |
| Tom1l1 | mmu-miR-449c | beg:128 | end:146 | pic:3' GGTCGATCGTTACGTGACGGA 5'& ||.|| ||||||. &5' ----CTGGCCAA-CACTGCT- 3' |
| Tom1l1 | mmu-miR-488 | beg:521 | end:532 | pic:3' CTGGTTCTTTGTCGGAAAGTT 5'& ||||||.| &5' ------------GCCTTTTA- 3' |
| Tom1l1 | mmu-miR-539 | beg:75 | end:99 | pic:3' TGTGTGGTT-CCTATTAAAGAGG 5'& .| |||. ||| |||||||. &5' --GCCCCAGTGGACCATTTCTCT 3' |
| Tom1l1 | mmu-miR-582-3p | beg:98 | end:116 | pic:3' AACCCAAGTCAACAAGTTGTCC 5'& ||| || |||||||| &5' -TGGA---AGC--TTCAACAG- 3' |
| Tom1l1 | mmu-miR-592 | beg:576 | end:598 | pic:3' TGTAGTAGCGTA-TAACTGTGTTA 5'& || .|||| ||| |||.|| &5' ----CAATGCATCATTTACATAA- 3' |
| Tom1l1 | mmu-miR-654-3p | beg:239 | end:250 | pic:3' TTCCACTACCAGTCGTCTGTAT 5'& ||||.||| &5' -------------GCAGGCAT- 3' |
| Tom1l1 | mmu-miR-669e | beg:41 | end:63 | pic:3' TACT-TGTACGTGTGTGTTCTGT 5'& || .| || ||| ||||||| &5' --GAGGCCTG-ACAGACAAGAC- 3' |
| Tom1l1 | mmu-miR-669g | beg:564 | end:586 | pic:3' TAGTACAG-TTGTGTATGTTACGT 5'& || ||| |||||||| &5' ----TGGAAAACTGG-ACAATGCA 3' |
| Tom1l1 | mmu-miR-684 | beg:176 | end:197 | pic:3' AACTGAACTT--C-CCTTTTGA 5'& |||| | |||||||| &5' ----CTTGTTGTGAGGAAAACT 3' |
| Tom1l1 | mmu-miR-691 | beg:154 | end:176 | pic:3' AAAAGACGGAGA---GAAGTCCTTA 5'& |||||. ||||||||| &5' -----TGCCTTGAGACTTCAGGAA- 3' |
| Tom1l1 | mmu-miR-741 | beg:80 | end:98 | pic:3' AGATGTATCTTACC--GTAGAGAGT 5'& |.||| |||.|||| &5' ---------AGTGGACCATTTCTC- 3' |
| Tom1l1 | mmu-miR-743b-5p | beg:564 | end:581 | pic:3' ACTACCTGTGGTCAGACTTGT 5'& |||| |||.||| &5' ---TGGAAAA----CTGGACA 3' |
| Tom1l1 | mmu-miR-871 | beg:360 | end:376 | pic:3' GTACTGACCGTGAT-TAGACTTAT 5'& |||. ||||||||. &5' ----------ACTGAATCTGAATG 3' |
| Tom1l1 | mmu-miR-876-3p | beg:456 | end:473 | pic:3' ACTTAATGAAACATTTGGTGAT 5'& || |||..|||||. &5' -------CTGAGTAGGCCACTG 3' |
| Tom1l1 | mmu-miR-880 | beg:268 | end:289 | pic:3' AGATGAGTCTCTC--CTACCTCAT 5'& |||| |||||.||| &5' ------CAGATCTATGATGGGGTA 3' |
| Tom1l1 | mmu-miR-93star | beg:24 | end:45 | pic:3' GCCCTTCACGATCGAGTCGTCA 5'& |||| || ||||||| &5' --GGAATA-CTTGATCAGCAG- 3' |
| Tom1l1 | mmu-miR-590-3p | beg:588 | end:603 | pic:3' TGATCGAATATGTATTTTAAT 5'& |||||||||||| &5' ---------TACATAAAATTA 3' |