DNA & RNA Element - circBase circRNA ID Chrom Start End Strand mmu_circ_0000064 chr1 94044832 94045071 - mmu_circ_0000063 chr1 94038096 94045071 -

DNA & RNA Element - miRTarBase Target Gene (Entrez ID) miRTarBase ID miRNA Species (miRNA) Target Gene Species (Target Gene) Experiments Support Type References (PMID) MIRT001725 mmu-miR-1a-3p Mus musculus Hdac4 208727 Mus musculus Microarray//Northern blot Functional MTI (Weak) 16380711 MIRT004922 mmu-miR-29b-3p Mus musculus Hdac4 208727 Mus musculus Luciferase reporter assay//Microarray//Northern blot//qRT-PCR//Western blot Functional MTI 19342382 MIRT004922 mmu-miR-29b-3p Mus musculus Hdac4 208727 Mus musculus Luciferase reporter assay//qRT-PCR//Western blot Functional MTI 21324893 MIRT004833 mmu-miR-133a-3p Mus musculus Hdac4 208727 Mus musculus Microarray//Northern blot Functional MTI (Weak) 16380711 MIRT000692 mmu-miR-140-5p Mus musculus Hdac4 208727 Mus musculus qRT-PCR//Western blot Functional MTI 19734943 MIRT000692 mmu-miR-140-5p Mus musculus Hdac4 208727 Mus musculus Luciferase reporter assay//Western blot Functional MTI 16828749 MIRT053785 mmu-miR-155-5p Mus musculus Hdac4 208727 Mus musculus Immunoblot//Luciferase reporter assay//Microarray//qRT-PCR Functional MTI 23169640 MIRT003372 mmu-miR-206-3p Mus musculus Hdac4 208727 Mus musculus Luciferase reporter assay//Western blot Functional MTI 20007902 MIRT003372 mmu-miR-206-3p Mus musculus Hdac4 208727 Mus musculus Luciferase reporter assay//qRT-PCR//Western blot Functional MTI 21324893 MIRT053095 mmu-miR-22-3p Mus musculus Hdac4 208727 Mus musculus Luciferase reporter assay//qRT-PCR//Western blot Functional MTI 23524588 MIRT006084 mmu-miR-29a-3p Mus musculus Hdac4 208727 Mus musculus Luciferase reporter assay//qRT-PCR//Western blot Functional MTI 21324893 MIRT006085 mmu-miR-29c-3p Mus musculus Hdac4 208727 Mus musculus Luciferase reporter assay//qRT-PCR//Western blot Functional MTI 21324893 MIRT004732 mmu-miR-10a-5p Mus musculus Hdac4 208727 Mus musculus Luciferase reporter assay//qRT-PCR//Western blot Functional MTI 20118242

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004524 mmu-miR-30b* 208727 Hdac4 cugcauuuGUAGGUG-UAGGGUc :| |||| |||||| uugauucuUACCCACAAUCCCAc 2 15 408 430 [mm9:1:93829494-93829516:-] 0.6456 122 6 -15.11 -0.7344 MIMAT0000137 mmu-miR-126-5p 208727 Hdac4 gcgcaUGGUUUU--CAUUAUUAc |:||||: ||||||| ugaaaAUCAAAGAUCUAAUAAUa 2 17 351 373 [mm9:1:93829551-93829573:-] 0.5589 151 7 -8.08 -1.0408 MIMAT0000143 mmu-miR-9* 208727 Hdac4 ugaaagccaauAGAUCGAAAua | ||||||| ucaacucaucuUGUAGCUUUuu 3 12 449 470 [mm9:1:93829454-93829475:-] 0.5722 127 0 -7.09 -0.1666 MIMAT0004572 mmu-miR-290-3p 208727 Hdac4 cccgaaUUUUGAUCCGCCG-UGAAa :||:|| |:||| |||| aaggaaGAAGCU-UGUGGCAACUUg 2 19 292 315 [mm9:1:93829609-93829632:-] 0.5589 120 0 -17.63 -0.1132 MIMAT0000367 mmu-miR-291a-5p 208727 Hdac4 ucucuCCCGGAGGUG-AAACUAc || ||: || |||||| aaacuGGUGCUUAACAUUUGAUu 2 18 391 413 [mm9:1:93829511-93829533:-] 0.6022 121 6 -11.61 -0.6869 MIMAT0000370 mmu-miR-292-3p 208727 Hdac4 ugugagUUUUGGACCGCCG-UGAAa |:|| || |:||| |||| gaaggaAGAAGCUUGUGGCAACUUg 2 19 291 315 [mm9:1:93829609-93829633:-] 0.5589 130 0 -16.29 -0.1132 MIMAT0000377 mmu-miR-299* 208727 Hdac4 uacauacacccuGC-CAUUUGGu || ||||||| ucccacagucucCGUGUAAACCa 2 11 425 447 [mm9:1:93829477-93829499:-] 0.6456 141 7 -13.35 -1.0799 MIMAT0004626 mmu-miR-18a* 208727 Hdac4 gucuucCUCGUGAAUCCC-GUCa |||:|| |||| ||| ucucuuGAGUACAAAGGGACAGc 2 17 90 112 [mm9:1:93829812-93829834:-] 0.5176 124 0 -18.25 -0.2781 MIMAT0004628 mmu-miR-21* 208727 Hdac4 cugucGGGUAGCUGACGACAAc |||: | |||||||| -----CCCGAAG-CUGCUGUUc 2 18 1 16 [mm9:1:93829908-93829923:-] 0.5198 151 7 -18.43 -1.0060 MIMAT0004630 mmu-miR-26b* 208727 Hdac4 cucGGUUCAUUACCUCUUGUcc |:|| |||| |||||| gauCUAA-UAAUACAGAACAaa 3 20 362 382 [mm9:1:93829542-93829562:-] 0.5589 141 0 -9.75 -0.1476 MIMAT0004631 mmu-miR-29a* 208727 Hdac4 gacuuguggUUUUC-UUUAGUca ||| | |||||| acaugaggaAAAUGAAAAUCAaa 3 14 339 361 [mm9:1:93829563-93829585:-] 0.5589 128 0 -6.35 -0.1336 MIMAT0004660 mmu-miR-19a* 208727 Hdac4 caucacgUUG-AUACGUUUUGau ||| | |||||| uuuuuuaAACGAAAACAAAACca 3 16 474 496 [mm9:1:93829428-93829450:-] 0.4987 122 0 -6.08 -0.1234 MIMAT0004662 mmu-miR-139-3p 208727 Hdac4 gaGGUUGUCCCGGCG-CAGAGGu || ||| || | |||||| uaCCCACAAUCCCACAGUCUCCg 2 21 416 438 [mm9:1:93829486-93829508:-] 0.6456 124 6 -21.08 -0.8466 MIMAT0004704 mmu-miR-335-3p 208727 Hdac4 ccaGUCCUCGUUAUUACUUUUu || ||| || |||||||| ugaCAUGAGGAA-AAUGAAAAu 2 20 337 357 [mm9:1:93829567-93829587:-] 0.5589 165 7 -12.44 -1.0371 MIMAT0001093 mmu-miR-411* 208727 Hdac4 ccAAUCACCUGGCACAA-UGUAu ||: || |:| ||| |||| agUUGCUGAAUCAAGUUGACAUg 2 21 321 343 [mm9:1:93829581-93829603:-] 0.5589 124 0 -11.85 -0.7387 MIMAT0004760 mmu-miR-470* 208727 Hdac4 agaagagucuuuccaUGACCAa |||||| acaaacuugauuaaaACUGGUg 2 8 378 399 [mm9:1:93829525-93829546:-] 0.5589 120 6 -10.93 -0.1101 MIMAT0003189 mmu-miR-291b-5p 208727 Hdac4 ccucuCCCGGAGGUG-AAACUAg || ||: || |||||| aaacuGGUGCUUAACAUUUGAUu 2 18 391 413 [mm9:1:93829511-93829533:-] 0.6022 121 6 -12.95 -0.6869 MIMAT0004822 mmu-miR-770-5p 208727 Hdac4 gcaccgggucugugcACCACGa |||||| aaacuugauuaaaacUGGUGCu 2 8 380 401 [mm9:1:93829523-93829544:-] 0.5589 120 6 -14.06 -0.1735 MIMAT0014815 mmu-miR-3099* 208727 Hdac4 guucccgaccuucCUUCGACc ||||||| ----------cccGAAGCUGc 2 9 1 11 [mm9:1:93829913-93829923:-] 0.5198 140 7 -8.92 -0.4656 MIMAT0003455 mmu-miR-679 208727 Hdac4 ugguucucagUGGAGUGUCAGg |:| ||||||| cuuacccacaAUCCCACAGUCu 2 13 414 435 [mm9:1:93829489-93829510:-] 0.6456 148 7 -17.08 -0.5299 MIMAT0003462 mmu-miR-684 208727 Hdac4 aacuGAACUUCCCUUUUGa :|| || |||||| uuuuUUUUAAACGAAAACa 2 16 472 490 [mm9:1:93829434-93829452:-] 0.4987 123 6 -3.25 -0.2517 MIMAT0003476 mmu-miR-669b 208727 Hdac4 uguACGUGUACGUGUGUUUUGa | :| | | | ||||||| uuuUUUAAACGAAAACAAAACc 2 20 474 495 [mm9:1:93829429-93829450:-] 0.4987 151 7 -8.74 -1.0100 MIMAT0003483 mmu-miR-696 208727 Hdac4 gggugUC-GUUCGUGUGCg || |||||||||| guggaAGCCAAGCACACGc 2 14 242 260 [mm9:1:93829664-93829682:-] 0.5437 156 7 -22.04 -0.2450 MIMAT0004898 mmu-miR-654-3p 208727 Hdac4 uuccacUACCAGU-CGUCUGUAu | || || ||||||| caacacACGGGCACACAGACAUg 2 17 220 242 [mm9:1:93829682-93829704:-] 0.5286 147 7 -14.46 -0.1956 MIMAT0005293 mmu-miR-467e 208727 Hdac4 uguAUAUGUACGAGUGU-GAAUa |:|: : |:||||| |||| ugcUGUGGGGGUUCACAGCUUAg 2 20 537 559 [mm9:1:93829365-93829387:-] 0.4987 127 0 -14.76 -0.3044 MIMAT0005844 mmu-miR-466f 208727 Hdac4 uguaCGUGU-ACGUG-UGUGUGCa | ||| ||:| ||||||| cacaGGACAGCGCGCAACACACGg 2 19 206 229 [mm9:1:93829695-93829718:-] 0.5286 152 7 -23.38 -0.1736 MIMAT0005853 mmu-miR-669e 208727 Hdac4 uacUUGUACGUGUGUGU-UCUGu |||| |: :|||| |||| cgcAACACACGGGCACACAGACa 2 20 218 240 [mm9:1:93829684-93829706:-] 0.5286 127 0 -19.02 -0.1926 MIMAT0007866 mmu-miR-1905 208727 Hdac4 gauggcgcaccacccUGACCAc |||||| acaaacuugauuaaaACUGGUg 2 8 378 399 [mm9:1:93829525-93829546:-] 0.5589 120 6 -13.76 -0.1079 MIMAT0007868 mmu-miR-1903 208727 Hdac4 acaGAGUCCUUCUUCUUCUUCc ||| |||| ||||||| agcCUC--GAAG--GAAGAAGc 2 20 285 302 [mm9:1:93829622-93829639:-] 0.5589 149 7 -16.18 -0.1096 MIMAT0009391 mmu-miR-1928 208727 Hdac4 cucgaccguuACAUCGa |||||| caacucaucuUGUAGCu 2 8 450 466 [mm9:1:93829458-93829474:-] 0.5722 120 6 -10.08 -0.1357 MIMAT0009397 mmu-miR-1933-3p 208727 Hdac4 uauCAGUGUGACUAC-CAGGACc || |||| || |||||| cccGUAUCACUCCUGCGUCCUGc 2 20 59 81 [mm9:1:93829843-93829865:-] 0.5672 127 6 -17.07 -0.3311 MIMAT0009430 mmu-miR-1957 208727 Hdac4 caguauacgagaUGGUGAc |||||| gucuccguguaaACCACUc 2 8 432 450 [mm9:1:93829474-93829492:-] 0.6456 120 6 -11.24 -0.1194 MIMAT0012773 mmu-miR-767 208727 Hdac4 acgagucuguugguACCACGu |||||| aacuugauuaaaacUGGUGCu 2 8 381 401 [mm9:1:93829523-93829543:-] 0.5589 120 6 -13.42 -0.1719 MIMAT0012774 mmu-miR-664 208727 Hdac4 auccgACCCCUCAUUUACUUau || ||| ||||||| ugacaUGAGGA--AAAUGAAaa 3 18 337 356 [mm9:1:93829568-93829587:-] 0.5589 134 0 -8.55 -0.1044 MIMAT0015645 mmu-miR-3473 208727 Hdac4 ccgacuCGGU-AGAGAGGu ||:: ||||||| gaagcuGCUGUUCUCUCCu 2 13 4 22 [mm9:1:93829902-93829920:-] 0.5198 143 7 -17.36 -0.9979 MIMAT0000127 mmu-miR-29b 208727 Hdac4 uuguGACUAAAGUUUACCACGAu :||||| || ||||||| aaacUUGAUUAAAACUGGUGCUu 2 20 380 402 [mm9:1:93829522-93829544:-] 0.5589 167 7 -19.17 -0.9928 MIMAT0000127 mmu-miR-29b 208727 Hdac4 uugugacuaaaguuuACCACGAu ||||||| uccugcguccugccuUGGUGCUc 2 9 69 91 [mm9:1:93829833-93829855:-] 0.5672 140 7 -13.12 -0.2252 MIMAT0000151 mmu-miR-140 208727 Hdac4 gaugguauCCCAUUUUGGUGAc | || |||||||| cagucuccGUGU-AAACCACUc 2 15 430 450 [mm9:1:93829474-93829494:-] 0.6456 148 7 -16.24 -1.0403 MIMAT0000214 mmu-miR-185 208727 Hdac4 aguCCUUGACGGAAAGAGAGGu | |:||||: |||||||| cccGAAGCUGCUGUUCUCUCCu 2 20 1 22 [mm9:1:93829902-93829923:-] 0.5198 171 7 -23.70 -0.9950 MIMAT0000216 mmu-miR-187 208727 Hdac4 ggccgACGUUGUGUUC-UGUGCu || || |||| ||||| acaugUGGAAGCCAAGCACACGc 2 18 238 260 [mm9:1:93829664-93829686:-] 0.5437 125 0 -18.92 -0.1856 MIMAT0000237 mmu-miR-204 208727 Hdac4 uccguaucCUACUGUUUCCCUu || ||||||||| gcucucuuGAGUACAAAGGGAc 2 15 88 109 [mm9:1:93829815-93829836:-] 0.5176 154 7 -15.55 -0.1344 MIMAT0000533 mmu-miR-26a 208727 Hdac4 ucggauaggaccuaaUGAACUu |||||| aauaauacagaacaaACUUGAu 2 8 367 388 [mm9:1:93829536-93829557:-] 0.5589 120 6 -6.91 -0.1181 MIMAT0000534 mmu-miR-26b 208727 Hdac4 uggauaggacuuaaUGAACUu |||||| auaauacagaacaaACUUGAu 2 8 368 388 [mm9:1:93829536-93829556:-] 0.5589 120 6 -6.91 -0.1181 MIMAT0000535 mmu-miR-29a 208727 Hdac4 auuGGCUAAAGUCUACCACGAu ::|||| | ||||||| aacUUGAUUAAAACUGGUGCUu 2 20 381 402 [mm9:1:93829522-93829543:-] 0.5589 155 7 -16.17 -0.9928 MIMAT0000535 mmu-miR-29a 208727 Hdac4 auuggcuaaagucuACCACGAu ||||||| ccugcguccugccuUGGUGCUc 2 9 70 91 [mm9:1:93829833-93829854:-] 0.5672 140 7 -13.47 -0.2252 MIMAT0000536 mmu-miR-29c 208727 Hdac4 auuGGCUAAAGUUUACCACGAu ::|||| || ||||||| aacUUGAUUAAAACUGGUGCUu 2 20 381 402 [mm9:1:93829522-93829543:-] 0.5589 163 7 -17.35 -0.9928 MIMAT0000536 mmu-miR-29c 208727 Hdac4 auuggcuaaaguuuACCACGAu ||||||| ccugcguccugccuUGGUGCUc 2 9 70 91 [mm9:1:93829833-93829854:-] 0.5672 140 7 -13.47 -0.2252 MIMAT0000666 mmu-miR-320 208727 Hdac4 agcgggaGAGUUGG--GUCGAAAa |||| |: :|||||| cacucaaCUCAUCUUGUAGCUUUu 2 16 446 469 [mm9:1:93829455-93829478:-] 0.5722 134 6 -17.19 -0.1362 MIMAT0000668 mmu-miR-211 208727 Hdac4 uccguuucCUACUGUUUCCCUu || ||||||||| gcucucuuGAGUACAAAGGGAc 2 15 88 109 [mm9:1:93829815-93829836:-] 0.5176 154 7 -15.55 -0.1344 MIMAT0000669 mmu-miR-221 208727 Hdac4 cuuUGGGUCGUCUGUUACAUCGa ||:|| | |: |||||| accACUCAACUCAUCUUGUAGCu 2 21 444 466 [mm9:1:93829458-93829480:-] 0.5722 128 6 -15.24 -0.1371 MIMAT0000670 mmu-miR-222 208727 Hdac4 ugggucaucggucuACAUCGa |||||| cacucaacucaucuUGUAGCu 2 8 446 466 [mm9:1:93829458-93829478:-] 0.5722 120 6 -14.84 -0.1398 MIMAT0000739 mmu-miR-375 208727 Hdac4 agugcgcucggcuugCUUGUUu |||||| agaucuaauaauacaGAACAAa 2 8 361 382 [mm9:1:93829542-93829563:-] 0.5589 120 6 -8.81 -0.1710 MIMAT0000746 mmu-miR-381 208727 Hdac4 ugucucucgaacgGGAACAUau :|||||| accacucaacucaUCUUGUAgc 3 10 444 465 [mm9:1:93829459-93829480:-] 0.5722 121 0 -8.84 -0.1804 MIMAT0000747 mmu-miR-382 208727 Hdac4 gcUUAGGUGGUG-CUUG-UUGAAg ||| | :|| |||| ||||| cuAAU--AAUACAGAACAAACUUg 2 21 365 386 [mm9:1:93829538-93829559:-] 0.5589 120 0 -10.44 -1.2024 MIMAT0004847 mmu-miR-882 208727 Hdac4 ugaUUACGCGAUUGAGAGAGGa || :||| ::||||||| ccgAAGCUGCU-GUUCUCUCCu 2 20 2 22 [mm9:1:93829902-93829922:-] 0.5198 153 7 -21.63 -1.0008 MIMAT0004855 mmu-miR-876-3p 208727 Hdac4 acUUAAUGAAACAUUUGGUGAu |:| | ||||||||||| acAGUCUCCGUGUAAACCACUc 2 21 429 450 [mm9:1:93829474-93829495:-] 0.6456 164 7 -16.78 -1.0376

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G037207 Hdac4 Mus musculus 208727 16380711 0 0 R25436; MOUSE$HDAC4_01; Binding factors: mmu-miR-1a-3p // 0 0 R25440; MOUSE$HDAC4_02; Binding factors: mmu-miR-1a-3p // 0 0 R42908; MOUSE$HDAC4_04; Binding factors: mmu-miR-27a-3p , mmu-miR-27b-3p , mmu-miR-350-3p // 0 0 R42915; MOUSE$HDAC4_05; Binding factors: mmu-miR-34a-5p , mmu-miR-449a-5p // 0 0 R42917; MOUSE$HDAC4_06; Binding factors: mmu-miR-124-3p //379 401 R35329; MOUSE$HDAC4_03; Binding factors: mmu-miR-29b-3p

DNA & RNA Element - miRecords Gene Name miRNA Species miRNA Mature ID miRNA Regulation Target Site Position Pubmed ID Hdac4 Mus musculus mmu-miR-1 unknown1 16380711 Hdac4 Mus musculus mmu-miR-1 unknown2 16380711 Hdac4 Mus musculus mmu-miR-29b overexpression by miRNA mimics tranfection 3749 19342382 Hdac4 Mus musculus mmu-mir-10a NA NA 20118242

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Hdac4 mmu-miR-204 beg:93 end:109 pic:3' TCCGTATCCTACTGTTTCCCTT 5'& || ||||||||| &5' --------GAGTACAAAGGGA- 3' Hdac4 mmu-miR-211 beg:93 end:109 pic:3' TCCGTTTCCTACTGTTTCCCTT 5'& || ||||||||| &5' --------GAGTACAAAGGGA- 3' Hdac4 mmu-miR-876-3p beg:436 end:450 pic:3' ACTTAATGAAACATTTGGTGAT 5'& ||||||||||| &5' ----------TGTAAACCACT- 3' Hdac4 mmu-miR-466f beg:212 end:229 pic:3' TGTACGTGTACGTGTGTGTGCA 5'& ||.| ||| ||||||| &5' ----GCGC--GCA-ACACACG- 3' Hdac4 mmu-miR-683 beg:102 end:126 pic:3' CTCCTGTG--TCGAATGTCGTCC 5'& .||||| .|| |.|||||| &5' -GGGACAGCAGGCGTGCAGCAG- 3' Hdac4 mmu-miR-654-3p beg:225 end:243 pic:3' TTCCACTACCA--GTCGTCTGTAT 5'& || || |||||||. &5' --------GGGCACA-CAGACATG 3' Hdac4 mmu-miR-1956 beg:137 end:155 pic:3' AGGCGACTGAGTCGGGACCTGA 5'& ||.|| ||||||||| &5' TCTGCC------GCCCTGGAC- 3' Hdac4 mmu-miR-3099star beg:1 end:11 pic:3' GTTCCCGACCTTCCTTCGACC 5'& ||||||| &5' -------------GAAGCTG- 3' Hdac4 mmu-miR-696 beg:244 end:261 pic:3' GGGTGTC-GTTCGTGTGCG 5'& || ||||||||||| &5' -----AGCCAAGCACACGC 3' Hdac4 mmu-miR-299star beg:434 end:448 pic:3' TACATACACCCTGC-CATTTGGT 5'& || |||||||| &5' ------------CGTGTAAACCA 3' Hdac4 mcmv-miR-m01-1 beg:8 end:25 pic:3' GGCAAGCTGCAATAAGAGGAGA 5'& |.|||| ||||||.| &5' CTGTTC--------TCTCCTTT 3' Hdac4 mghv-miR-M1-5 beg:441 end:456 pic:3' CTCTGCTGGGCTAGAGTTGAGA 5'& ||| |||||||| &5' ------ACCA---CTCAACTC- 3' Hdac4 mmu-let-7e beg:64 end:85 pic:3' TTGATATGTTGGAGGATGGAGT 5'& ||| .| ||||.|||. &5' -ACTCCT--GCGTCCTGCCTT- 3' Hdac4 mmu-miR-125a-3p beg:38 end:61 pic:3' CCGAG--GGTTCTTGGAGTGGACA 5'& |||| ||||||| ||.||| &5' -GCTCAGCCAAGAAACTTACC--- 3' Hdac4 mmu-miR-140 beg:431 end:450 pic:3' GATGGTATCCCATTTTGGTGAC 5'& || ||.|. |||||||| &5' CT-CCGTGT----AAACCACT- 3' Hdac4 mmu-miR-185 beg:3 end:22 pic:3' AGTCCTTGACGGAAAGAGAGGT 5'& | |.||||. |||||||| &5' ---GAAGCTGCTGTTCTCTCC- 3' Hdac4 mmu-miR-187 beg:224 end:243 pic:3' GGCCGACGTTGTGTTCTGTGCT 5'& ||| || |||| |||||.| &5' -CGG--GC-ACAC-AGACATG- 3' Hdac4 mmu-miR-188-3p beg:528 end:548 pic:3' ACGTTTGGGACGTACACCCTC 5'& | .. ||| ||||||.| &5' -GTGGGG--TGC-TGTGGGGG 3' Hdac4 mmu-miR-1892 beg:269 end:294 pic:3' TAGGAGGGAGGGCA----GGGGTTTA 5'& |||||| ||.| ||.|.|| &5' --CCTCCC-CCTGGGAAGCCTCGAA- 3' Hdac4 mmu-miR-1907 beg:0 end:17 pic:3' TGGAGGTCTAGGAGACGACGAG 5'& || || ||||||.|| &5' ----CCCGAAG--CTGCTGTTC 3' Hdac4 mmu-miR-1937c beg:270 end:285 pic:3' ACCCCCGAGAA-GGCCCTA 5'& ||| |.|||| &5' ------CTCCCCCTGGGA- 3' Hdac4 mmu-miR-1982star beg:269 end:291 pic:3' GGAGGGG--TCCTG-GGAGGGTT 5'& ||||||| .||| |||| &5' CCTCCCCCTGGGAAGCCTC---- 3' Hdac4 mmu-miR-2132 beg:210 end:232 pic:3' GTAGCGCAGTTGTG-GGCGG 5'& || |||| |||||| | | | &5' CAGCGCG-CAACACACGGGC 3' Hdac4 mmu-miR-2139 beg:106 end:124 pic:3' CGTCAATGGTCC-TCGTCGCGTCGA 5'& ||| .|| |.||||| &5' --------CAGCAGGC-GTGCAGC- 3' Hdac4 mmu-miR-214star beg:103 end:128 pic:3' CGTGTCGTTCACATC-TGTCCGT 5'& | ||||||.| ||. .|| ||| &5' GGACAGCAGGCGTGCAGCA-GCA 3' Hdac4 mmu-miR-218 beg:235 end:258 pic:3' TGTAC-CAATCTAGTTCGTGTT 5'& ||||| | || |||||||| &5' ACATGTGGAAGC-CAAGCACA- 3' Hdac4 mmu-miR-2183 beg:527 end:552 pic:3' TC-CTCCA----GTCCCCAAGTT 5'& || |.||| ..|||||||| &5' AGTGGGGTGCTGTGGGGGTTCA- 3' Hdac4 mmu-miR-21star beg:0 end:16 pic:3' CTGTCGGGTAGCTGACGACAAC 5'& |||. .|||||||| &5' -----CCCGAA-GCTGCTGTT- 3' Hdac4 mmu-miR-29a beg:381 end:402 pic:3' ATTGGCTAAAGTCTACCACGAT 5'& ..|||| ||||||| &5' ---TTGATTAAAACTGGTGCT- 3' Hdac4 mmu-miR-29b beg:381 end:402 pic:3' TTGTGACTAAAGTTTACCACGAT 5'& .||||| || ||||||| &5' ----TTGATTAAAACTGGTGCT- 3' Hdac4 mmu-miR-29bstar beg:488 end:514 pic:3' ATTTGGTGGT--ATACTTTGGTCG 5'& ||||||.. ||||. | || &5' -AAACCATTTTCTATGGCTCTGGC 3' Hdac4 mmu-miR-29c beg:381 end:402 pic:3' ATTGGCTAAAGTTTACCACGAT 5'& ..|||| || ||||||| &5' ---TTGATTAAAACTGGTGCT- 3' Hdac4 mmu-miR-320 beg:450 end:470 pic:3' AGCGGGAGAGTT--GGGTCGAAAA 5'& |||| . .||||||| &5' -------CTCATCTTGTAGCTTTT 3' Hdac4 mmu-miR-322 beg:0 end:16 pic:3' AGGTTTTGTACTTAACGACGAC 5'& ||.||.| |||||.| &5' -CCGAAGC------TGCTGTT- 3' Hdac4 mmu-miR-324-5p beg:523 end:540 pic:3' TGTGGTTACGGGATC-CCCTACGC 5'& ||.||| |||.||| &5' ---------CCTTAGTGGGGTGC- 3' Hdac4 mmu-miR-335-3p beg:337 end:357 pic:3' CCAGTCCTCGTTATTACTTTTT 5'& || ||| || |||||||| &5' ---CATGAGGAA-AATGAAAA- 3' Hdac4 mmu-miR-3473 beg:4 end:22 pic:3' CCGACTCGGT-AGAGAGGT 5'& ||| ||.. ||||||| &5' -GCT--GCTGTTCTCTCC- 3' Hdac4 mmu-miR-453 beg:296 end:315 pic:3' ACGTTCGAGTGATACTCCGTTGGA 5'& ||||| . ||||||.| &5' ---AAGCTTGT-----GGCAACTT 3' Hdac4 mmu-miR-463 beg:15 end:36 pic:3' GATGGAATATACCACAGATAGT 5'& || |.||.| |||||.|| &5' CTCCTTTGTT---TGTCTGTC- 3' Hdac4 mmu-miR-540-3p beg:501 end:516 pic:3' GGTCCTAGCTGGAGACTGGA 5'& .|. |||||.||| &5' -------TGG-CTCTGGCCT 3' Hdac4 mmu-miR-669e beg:195 end:215 pic:3' TACTTGTACGTGTGTGTTCTGT 5'& ||||| | |||||.|||| &5' ----ACATGGA-ACACAGGACA 3' Hdac4 mmu-miR-673-3p beg:132 end:154 pic:3' CCACGTGTCTTGA-GTCGGGGCCT 5'& || | || | ||||.||| &5' ---GC-CTTT-CTGCCGCCCTGGA 3' Hdac4 mmu-miR-673-3p beg:69 end:86 pic:3' CCACGTGTCTTGAGT-CGGGGCCT 5'& |||. || |||..|| &5' --TGCG------TCCTGCCTTGG- 3' Hdac4 mmu-miR-684 beg:333 end:352 pic:3' AACTGAACTTCCCTTTTGA 5'& ||||| ||| ||||||. &5' TTGACATGA--GGAAAAT- 3' Hdac4 mmu-miR-709 beg:65 end:85 pic:3' AGGAGGACGGA-GACGGAGG 5'& ||||||| | ||||||. &5' --CTCCTGCGTCCTGCCTT- 3' Hdac4 mmu-miR-744star beg:199 end:225 pic:3' TCCAAC--TCCAATCAC-CGTTGTC 5'& || ||| || | |||||| &5' -GGAACACAGGACAGCGCGCAACA- 3' Hdac4 mmu-miR-767 beg:298 end:320 pic:3' ACGAGT-CTGTTGGTACCACGT 5'& |||.. |.||||. ||| ||| &5' -GCTTGTGGCAACT-TGG-GCA 3' Hdac4 mmu-miR-877 beg:5 end:26 pic:3' GGGACG-CGGTAGAGGAGATG 5'& |||| |. ||||||.|. &5' --CTGCTGTTCTCTCCTTTG- 3' Hdac4 mmu-miR-879 beg:122 end:141 pic:3' CCGAATCTCGATA---TTCGGAGA 5'& ||| ||||||.| &5' -------AGCAACGGGAAGCCTTT 3' Hdac4 mmu-miR-882 beg:4 end:23 pic:3' TGATTACG-CGATTGAGAGAGGA 5'& || ||| ..|||||||| &5' ------GCTGCT-GTTCTCTCCT 3' Hdac4 mmu-miR-9 beg:349 end:364 pic:3' AGTATGTCGATCTATTGGTTTCT 5'& || ||.|||||| &5' -----------GAAAATCAAAGA 3'

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Hdac4 RAID00155127 mmu-miR-10a-5p miRNA MIMAT0000648 Hdac4 mRNA 208727 Reporter Assay//RT-PCR//Western Blot 0.9526 Hdac4 RAID00184943 mmu-miR-7221-3p miRNA MIMAT0028411 Hdac4 mRNA 208727 Prediction 0.1828 Hdac4 RAID00214629 mmu-miR-6963-5p miRNA MIMAT0027826 Hdac4 mRNA 208727 Prediction 0.1828 Hdac4 RAID00219188 mmu-miR-187-3p miRNA MIMAT0000216 Hdac4 mRNA 208727 Prediction 0.1828 Hdac4 RAID00323375 mmu-miR-7116-3p miRNA MIMAT0028130 Hdac4 mRNA 208727 Prediction 0.1828 Hdac4 RAID00364113 mmu-miR-221-3p miRNA MIMAT0000669 Hdac4 mRNA 208727 Prediction 0.1828 Hdac4 RAID00470052 mmu-miR-6951-3p miRNA MIMAT0027803 Hdac4 mRNA 208727 Prediction 0.1828 Hdac4 RAID00518278 mmu-miR-29a-3p miRNA MIMAT0000535 Hdac4 mRNA 208727 Reporter Assay//RT-PCR//Western Blot//Prediction 0.9639 Hdac4 RAID00553076 mmu-miR-6540-5p miRNA MIMAT0025585 Hdac4 mRNA 208727 Prediction 0.1828 Hdac4 RAID00576806 mmu-miR-138-5p miRNA MIMAT0000150 Hdac4 mRNA 208727 Prediction 0.1828 Hdac4 RAID00598177 mmu-miR-3064-3p miRNA MIMAT0014835 Hdac4 mRNA 208727 Prediction 0.1828 Hdac4 RAID00716122 mmu-miR-299a-5p miRNA MIMAT0000377 Hdac4 mRNA 208727 Prediction 0.2202 Hdac4 RAID00719335 mmu-miR-7656-5p miRNA MIMAT0029818 Hdac4 mRNA 208727 Prediction 0.1828 Hdac4 RAID00736809 mmu-miR-7094-3p miRNA MIMAT0028095 Hdac4 mRNA 208727 Prediction 0.1828 Hdac4 RAID00823452 mmu-miR-126a-5p miRNA MIMAT0000137 Hdac4 mRNA 208727 Prediction 0.1828 Hdac4 RAID00923380 mmu-miR-3112-3p miRNA MIMAT0014956 Hdac4 mRNA 208727 Prediction 0.1828 Hdac4 RAID00945334 mmu-miR-29b-3p miRNA MIMAT0000127 Hdac4 mRNA 208727 Reporter Assay//Northern Blot//RT-PCR//Western Blot//Microarray//Prediction 0.9938 Hdac4 RAID01010575 mmu-miR-320-3p miRNA MIMAT0000666 Hdac4 mRNA 208727 Prediction 0.2202 Hdac4 RAID01045742 mmu-miR-211-5p miRNA MIMAT0000668 Hdac4 mRNA 208727 Prediction 0.1828 Hdac4 RAID01077753 mmu-miR-10b-5p miRNA MIMAT0000208 Hdac4 mRNA 208727 Prediction 0.1828 Hdac4 RAID01148643 mmu-miR-3473a miRNA MIMAT0015645 Hdac4 mRNA 208727 Prediction 0.1828 Hdac4 RAID01171588 mmu-miR-8119 miRNA MIMAT0031425 Hdac4 mRNA 208727 Prediction 0.1828 Hdac4 RAID01172925 mmu-miR-1a-3p miRNA MIMAT0000123 Hdac4 mRNA 208727 RT-PCR//Northern Blot//Microarray 0.9462 Hdac4 RAID01208790 mmu-miR-875-5p miRNA MIMAT0004937 Hdac4 mRNA 208727 Prediction 0.1828 Hdac4 RAID01363468 mmu-miR-185-5p miRNA MIMAT0000214 Hdac4 mRNA 208727 Prediction 0.2202 Hdac4 RAID01377266 mmu-miR-26a-5p miRNA MIMAT0000533 Hdac4 mRNA 208727 Prediction 0.1828 Hdac4 RAID01397210 mmu-miR-6933-5p miRNA MIMAT0027766 Hdac4 mRNA 208727 Prediction 0.1828 Hdac4 RAID01461081 mmu-miR-6962-3p miRNA MIMAT0027825 Hdac4 mRNA 208727 Prediction 0.1828 Hdac4 RAID01485196 mmu-miR-876-3p miRNA MIMAT0004855 Hdac4 mRNA 208727 CLIP-seq//Prediction 0.6559 Hdac4 RAID01593005 mmu-miR-22-3p miRNA MIMAT0000531 Hdac4 mRNA 208727 Reporter Assay//RT-PCR//Western Blot//Prediction 0.9612 Hdac4 RAID01599872 mmu-miR-382-5p miRNA MIMAT0000747 Hdac4 mRNA 208727 Prediction 0.1828 Hdac4 RAID01656493 mmu-miR-7057-5p miRNA MIMAT0028018 Hdac4 mRNA 208727 Prediction 0.1828 Hdac4 RAID01949910 mmu-miR-19b-3p miRNA MIMAT0000513 Hdac4 mRNA 208727 Prediction 0.1828 Hdac4 RAID02088433 mmu-miR-6983-3p miRNA MIMAT0027869 Hdac4 mRNA 208727 Prediction 0.1828 Hdac4 RAID02138284 mmu-miR-882 miRNA MIMAT0004847 Hdac4 mRNA 208727 Prediction 0.2202 Hdac4 RAID02219705 mmu-miR-7211-3p miRNA MIMAT0028391 Hdac4 mRNA 208727 Prediction 0.1828 Hdac4 RAID02220003 mmu-miR-6344 miRNA MIMAT0025087 Hdac4 mRNA 208727 Prediction 0.1828 Hdac4 RAID02227072 mmu-miR-669b-5p miRNA MIMAT0003476 Hdac4 mRNA 208727 Prediction 0.1828 Hdac4 RAID02301251 mmu-miR-7042-3p miRNA MIMAT0027989 Hdac4 mRNA 208727 Prediction 0.1828 Hdac4 RAID02459381 mmu-miR-6392-3p miRNA MIMAT0025142 Hdac4 mRNA 208727 Prediction 0.1828 Hdac4 RAID02530010 mmu-miR-155-5p miRNA MIMAT0000165 Hdac4 mRNA 208727 RT-PCR//Reporter Assay//Western Blot//Microarray 0.9786 Hdac4 RAID02537433 mmu-miR-543-5p miRNA MIMAT0017207 Hdac4 mRNA 208727 Prediction 0.1828 Hdac4 RAID02608679 mmu-miR-206-3p miRNA MIMAT0000239 Hdac4 mRNA 208727 Reporter Assay//RT-PCR//Western Blot 0.9526 Hdac4 RAID02615227 mmu-miR-140-5p miRNA MIMAT0000151 Hdac4 mRNA 208727 Western Blot//Reporter Assay//RT-PCR//Prediction 0.9630 Hdac4 RAID02669380 mmu-miR-370-3p miRNA MIMAT0001095 Hdac4 mRNA 208727 Prediction 0.1828 Hdac4 RAID02694883 mmu-miR-124-3p miRNA MIMAT0000134 Hdac4 mRNA 208727 Prediction 0.1828 Hdac4 RAID02766628 mmu-miR-375-3p miRNA MIMAT0000739 Hdac4 mRNA 208727 Prediction 0.1828 Hdac4 RAID02802119 mmu-miR-381-3p miRNA MIMAT0000746 Hdac4 mRNA 208727 Prediction 0.1828 Hdac4 RAID02891638 mmu-miR-670-3p miRNA MIMAT0017242 Hdac4 mRNA 208727 Prediction 0.2202 Hdac4 RAID02966543 mmu-miR-7230-3p miRNA MIMAT0028429 Hdac4 mRNA 208727 Prediction 0.1828 Hdac4 RAID02984790 mmu-miR-142a-5p miRNA MIMAT0000154 Hdac4 mRNA 208727 Prediction 0.1828 Hdac4 RAID03005098 mmu-miR-3547-3p miRNA MIMAT0027833 Hdac4 mRNA 208727 Prediction 0.1828 Hdac4 RAID03028824 mmu-miR-216c-5p miRNA MIMAT0029888 Hdac4 mRNA 208727 Prediction 0.1828 Hdac4 RAID03093945 mmu-miR-340-5p miRNA MIMAT0004651 Hdac4 mRNA 208727 Prediction 0.1828 Hdac4 RAID03098784 mmu-miR-133a-3p miRNA MIMAT0000145 Hdac4 mRNA 208727 Northern Blot//Microarray 0.8785 Hdac4 RAID03272428 mmu-miR-8091 miRNA MIMAT0031392 Hdac4 mRNA 208727 Prediction 0.1828 Hdac4 RAID03312133 mmu-miR-7012-5p miRNA MIMAT0027928 Hdac4 mRNA 208727 Prediction 0.1828 Hdac4 RAID03319615 mmu-miR-26b-5p miRNA MIMAT0000534 Hdac4 mRNA 208727 Prediction 0.1828 Hdac4 RAID03344102 mmu-miR-365-3p miRNA MIMAT0000711 Hdac4 mRNA 208727 Western Blot//Reporter Assay//RT-PCR//Prediction 0.9612 Hdac4 RAID03474171 mmu-miR-222-3p miRNA MIMAT0000670 Hdac4 mRNA 208727 Prediction 0.1828 Hdac4 RAID03550784 mmu-miR-7682-3p miRNA MIMAT0029885 Hdac4 mRNA 208727 Prediction 0.1828 Hdac4 RAID03628815 mmu-miR-7052-3p miRNA MIMAT0028009 Hdac4 mRNA 208727 Prediction 0.1828 Hdac4 RAID03734458 mmu-miR-204-5p miRNA MIMAT0000237 Hdac4 mRNA 208727 Prediction 0.1828 Hdac4 RAID03757336 mmu-miR-29c-3p miRNA MIMAT0000536 Hdac4 mRNA 208727 Reporter Assay//RT-PCR//Western Blot//Prediction 0.9642 Hdac4 RAID03831158 mmu-miR-679-5p miRNA MIMAT0003455 Hdac4 mRNA 208727 Prediction 0.1828 Hdac4 RAID03834355 mmu-miR-8118 miRNA MIMAT0031424 Hdac4 mRNA 208727 Prediction 0.1828 Hdac4 RAID03838372 mmu-miR-421-3p miRNA MIMAT0004869 Hdac4 mRNA 208727 Prediction 0.1828 Hdac4 RAID03856467 mmu-miR-93-5p miRNA MIMAT0000540 Hdac4 mRNA 208727 Prediction 0.1828 Hdac4 RAID03949731 mmu-miR-8113 miRNA MIMAT0031419 Hdac4 mRNA 208727 Prediction 0.1828