iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

PPI - IID
Symbol 1	Symbol 2	PMID	DBs	Evidence Type	Adipose Tissue	Adrenal Gland	Amygdala	Bone	Bone Marrow	Brain	Dorsal Root Ganglia	Eye	Heart	Hindgut	Hypothalamus	Kidney	Liver	Lung	Lymph Nodes	Mammary Gland	Midgut	Neurons	Ovary	Pancreas	Pituitary Gland	Placenta	Prostate	Salivary Gland	Skeletal Muscle	Small Intestine	Spleen	Stomach	Testes	Uterus
Eif3f	Hsd3b7	16615898	intact	exp	G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G		G
Eed	Eif3f	20064375,24457600	innatedb,biogrid,intact	exp	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Kcnma1	Eif3f	19423573	biogrid,intact	exp		G	G		G	G	G	G	G	G	G					G		G	G	G	G		G	G	G	G		G		G
Ywhae	Eif3f	16615898	intact	exp	GP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Eif3a	Eif3f	17581632	intact	exp, ortho	GP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Fbxo32	Eif3f	22673621,18354498	biogrid,mint,intact	exp, ortho	G	G				G		G	G	G				G	G	G	G	G	G	G	G	G	G	G	G	G	G	G		G
Eif3f	Mtor	16541103	mint,intact	exp, ortho	GP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Ywhaz	Eif3f	16615898	intact	exp, ortho	GP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Notch1	Eif3f	21124883	dip	exp, ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G		G
Igsf8	Eif3f			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G		G	G	G	G	G
Rad21	Eif3f			ortho	GP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Cdk19	Eif3f			ortho
Eif3f	Eif3f			ortho	GP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Msmo1	Eif3f			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Prrc2b	Eif3f			ortho	P
Prrc2a	Eif3f			ortho	GP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Eif3f	Tsc1			ortho	GP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Shb	Eif3f			ortho	P
Huwe1	Eif3f			ortho	GP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Eif3f	Eif3i			ortho	GP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Eif4e	Eif3f			ortho	GP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Eif4g1	Eif3f			ortho	GP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Gle1	Eif3f			ortho	GP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Lrrc49	Eif3f			ortho		G	G			G	G				G							G	G		G								G	G
Eif3f	Tubb3			ortho	P		G			G	G			G	G							G		G	G	G							G
Eif3c	Eif3f			ortho	GP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Xrcc3	Eif3f			ortho
Eif4g2	Eif3f			ortho	GP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Cd81	Eif3f			ortho	GP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Eif3f	Smad9			ortho
Egfr	Eif3f			ortho	GP							G		G		G	G	G		G	G		G	G	G	G	G	G	G	G		G		G
Eif4b	Eif3f			ortho	GP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Ntrk1	Eif3f			ortho
Csnk2b	Eif3f			ortho	GP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Nde1	Eif3f			ortho	GP	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Snw1	Eif3f			ortho	GP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Shbg	Eif3f			ortho																								G					G
Usp3	Eif3f			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Eif3k	Eif3f			ortho	GP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Eif3f	Eif3g			ortho	GP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Ddx3x	Eif3f			ortho	GP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Eif3f	Mrpl46			ortho	GP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Hax1	Eif3f			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Exoc5	Eif3f			ortho	P
Eif3f	Upf1			ortho	GP	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Rpl10	Eif3f			ortho	P
Atxn1	Eif3f			ortho
Eif3h	Eif3f			ortho	GP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
App	Eif3f			ortho	GP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Eif3d	Eif3f			ortho	GP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Csnk2a2	Eif3f			ortho	GP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Tpgs1	Eif3f			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Eif3f	Dkc1			ortho	P
Immt	Eif3f			ortho	GP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Eif3m	Eif3f			ortho	GP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Hnrnpk	Eif3f			ortho	GP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Icam1	Eif3f			ortho	GP	G		G	G			G	G			G	G	G	G	G	G		G			G	G	G		G	G	G		G
Eif3l	Eif3f			ortho	GP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Kif2a	Eif3f			ortho	GP	G	G	G	G	G	G	G	G	G	G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Rnf139	Eif3f			ortho
Mcc	Eif3f			ortho
Vcl	Eif3f			ortho	GP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Atp6v1a	Eif3f			ortho	GP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Slc25a17	Eif3f			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Abce1	Eif3f			ortho	GP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Cd247	Eif3f			ortho															G	G											G
UPF0705 protein C11orf49 homolog	Eif3f			ortho	G	G	G	G	G	G	G	G	G	G	G	G		G	G	G		G	G	G	G	G	G	G	G	G	G	G	G	G
Eif3f	Fbxo6			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Uqcrq	Eif3f			ortho	GP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Eif3b	Eif3f			ortho	GP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Eif3f	Hdac5			ortho	GP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Msh4	Eif3f			ortho																													G
Ubc	Eif3f			ortho	GP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Ascc3	Eif3f			ortho	P
Eif4e2	Eif3f			ortho	GP	G		G	G	G	G	G	G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Cdk11b	Eif3f			ortho	GP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Rps6kb1	Eif3f			ortho	GP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Fn1	Eif3f			ortho	GP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Htr2a	Eif3f			ortho
Med6	Eif3f			ortho	G	G	G	G	G	G	G	G	G		G	G	G	G	G	G	G	G	G	G	G	G	G		G	G	G		G	G
Traf6	Eif3f			ortho	G	G		G				G		G	G	G		G	G	G	G		G	G		G	G	G		G	G	G		G
Rce1	Eif3f			ortho	GP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Eif4a2	Eif3f			ortho	GP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Ccna1	Eif3f			ortho																													G
Ptn	Eif3f			ortho		G	G	G		G	G	G	G	G	G				G	G	G	G	G	G	G	G	G	G		G		G		G
Uncharacterized protein C19orf52 homolog	Eif3f			ortho	GP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Cflar	Eif3f			ortho	G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G		G
Dtx1	Eif3f			ortho		G	G	G	G	G	G	G	G	G	G			G	G	G	G	G	G	G	G	G		G	G	G	G	G	G	G
Cops5	Eif3f			ortho	GP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Mael	Eif3f			ortho
Eif3e	Eif3f			ortho	GP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Jun	Eif3f			ortho	G	G	G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Csnk2a1	Eif3f			ortho	GP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Eif3f	Sgk1			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Eif1b	Eif3f			ortho	GP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Pan2	Eif3f			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Wdr48	Eif3f			ortho	GP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Dmd	Eif3f			ortho	GP	G	G			G	G	G	G	G	G	G	G	G		G	G	G	G	G	G	G	G	G	G	G	G	G		G
Rnf2	Eif3f			ortho	GP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Eif4g3	Eif3f			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Eef1a1	Eif3f			ortho	GP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

PPI - iRefIndex
UniProt A	UniProt B	Method	PMID	Interaction Type	Edge type	Num Participants
Q9DCH4	Q9CPU7	affinity chromatography technology	22673621	physical association	X	2
Q9DCH4	Q921E6	affinity chromatography technology	24457600	physical association	X	2
Q9DCH4		affinity chromatography technology	19423573	physical association	X	2
	Q9DCH4	anti tag coimmunoprecipitation	21124883	-	C	3
	Q9DCH4	anti tag coimmunoprecipitation	21124883	-	C	3
	Q9DCH4	anti tag coimmunoprecipitation	21124883	-	C	3
Q9DCH4	Q86Y01	anti tag coimmunoprecipitation	21124883	physical association	X	2
Q9DCH4	Q86Y01	anti tag coimmunoprecipitation	21124883	physical association	X	2
Q9DCH4	Q86Y01	anti tag coimmunoprecipitation	21124883	physical association	X	2
Q9DCH4	Q86Y01	anti tag coimmunoprecipitation	21124883	physical association	X	2
Q9DCH4	Q86Y01	anti tag coimmunoprecipitation	21124883	physical association	X	2
Q9DCH4	Q86Y01	anti tag coimmunoprecipitation	21124883	physical association	X	2
Q9DCH4	Q86Y01	anti tag coimmunoprecipitation	21124883	physical association	X	2
Q9DCH4	Q86Y01	anti tag coimmunoprecipitation	21124883	physical association	X	2
Q9DCH4	Q86Y01	anti tag coimmunoprecipitation	21124883	physical association	X	2
Q9DCH4	Q01705	anti tag coimmunoprecipitation	21124883	physical association	X	2
Q14152	Q9DCH4	anti tag coimmunoprecipitation	21124883	physical association	X	2
Q14152	Q9DCH4	anti tag coimmunoprecipitation	21124883	physical association	X	2
Q14152	Q9DCH4	anti tag coimmunoprecipitation	21124883	physical association	X	2
Q14152	Q9DCH4	anti tag coimmunoprecipitation	21124883	physical association	X	2
	Q9DCH4	cosedimentation	16615898	colocalization	C	1216
	Q9DCH4	anti bait coimmunoprecipitation	19423573	association	C	100
Q9DCH4	Q9JLN9	anti tag coimmunoprecipitation	16541103	physical association	X	2
Q9DCH4	Q9JLN9	anti tag coimmunoprecipitation	16541103	physical association	X	2
Q9DCH4	Q9JLN9	pull down	16541103	physical association	X	2
Q9DCH4	Q9JLN9	pull down	16541103	physical association	X	2
Q9DCH4	Q9JLN9	two hybrid	16541103	physical association	X	2
Q9DCH4	Q9CPU7	fluorescence microscopy	18354498	colocalization	X	2
Q9DCH4	Q9CPU7	anti bait coimmunoprecipitation	18354498	physical association	X	2
	Q9DCH4	pull down	17581632	association	C	10
	Q9DCH4	molecular sieving	17581632	association	C	10
	Q9DCH4	pull down	17581632	association	C	10
	Q9DCH4	anti tag coimmunoprecipitation	20064375	association	C	35

PPI - PINA
Gene A	Gene B	Method	Publications	Species A	Species B	Interaction Type	Source Database	Interaction Identidiers	Experimental Role(s) Interactor A	Experimental Role(s) Interactor B
Eif3f	Mtor	MI:0006(anti bait coimmunoprecipitation)\|MI:0006(anti bait coimmunoprecipitation)\|MI:0006(anti bait coimmunoprecipitation)\|MI:0006(anti bait coimmunoprecipitation)\|MI:0006(anti bait coimmunoprecipitation)\|MI:0006(anti bait coimmunoprecipitation)\|MI:0006(anti bait coimmunoprecipitation)\|MI:0006(anti bait coimmunoprecipitation)\|MI:0006(anti bait coimmunoprecipitation)\|MI:0006(anti bait coimmunoprecipitation)	16541103	taxid:10090(Mus musculus)	taxid:10090(Mus musculus)	MI:0915(physical association)\|MI:0915(physical association)\|MI:0915(physical association)\|MI:0915(physical association)\|MI:0915(physical association)\|MI:0915(physical association)\|MI:0915(physical association)\|MI:0915(physical association)\|MI:0915(physical association)\|MI:0915(physical association)	MI:0471(mint)\|MI:0471(mint)\|(intact)\|MI:0471(mint)\|(intact)\|(intact)\|(intact)\|MI:0471(mint)\|(intact)\|MI:0471(mint)	MINT_80625\|MINT_80616\|UniProt_167606\|MINT_80626\|UniProt_167607\|UniProt_167604\|UniProt_167605\|MINT_80615\|UniProt_167609\|MINT_80624	bait\|prey\|bait\|prey\|bait\|prey\|prey\|prey\|prey\|bait	prey\|bait\|prey\|bait\|prey\|bait\|bait\|bait\|bait\|prey
Fbxo32	Eif3f	MI:0018(two hybrid)\|MI:0018(two hybrid)\|MI:0018(two hybrid)\|MI:0018(two hybrid)\|MI:0018(two hybrid)\|MI:0004(affinity chromatography technology)	18354498,22673621	taxid:10090(Mus musculus)	taxid:10090(Mus musculus)	MI:0403(colocalization)\|MI:0915(physical association)\|MI:0915(physical association)\|MI:0403(colocalization)\|MI:0403(colocalization)\|MI:0915(physical association)	(intact)\|MI:0471(mint)\|(intact)\|(intact)\|MI:0471(mint)\|(biogrid)	UniProt_169602\|MINT_65895\|UniProt_169603\|UniProt_96186\|MINT_65894\|BIOGRID_328284	neutral component\|bait\|bait\|neutral component\|neutral component\|bait	neutral component\|prey\|prey\|neutral component\|neutral component\|prey
Eed	Eif3f	MI:0027(cosedimentation)\|MI:0007(anti tag coimmunoprecipitation)\|MI:0004(affinity chromatography technology)	16615898,20064375,24457600	taxid:10090(Mus musculus)	taxid:10090(Mus musculus)	MI:0403(colocalization)\|MI:0914(association)\|MI:0915(physical association)	(intact)\|(intact)\|(biogrid)	UniProt_167137\|UniProt_170643\|BIOGRID_332644	neutral component\|bait\|bait	neutral component\|prey\|prey

PPI - HINT
Gene A	Gene B	PMID	Method	Quality
EIF3A	EIF3F	17581632,17581632	0096,0071	LC
YWHAE	EIF3F	16615898	0027	LC
YWHAZ	EIF3F	16615898	0027	LC
FBXO32	EIF3F	18354498,18354498	0006,0416	LC
EIF3F	HSD3B7	16615898	0027	LC
EIF3F	MTOR	16541103,16541103,16541103	0096,0007,0018	LC
EIF3A	EIF3F	17581632,17581632	0096,0071	LC
NOTCH1	EIF3F	21124883	0007	LC
KCNMA1	EIF3F	19423573,19423573	0004,0006	LC
EED	EIF3F	20064375,24457600	0007,0004	LC
FBXO32	EIF3F	18354498,18354498,22673621	0006,0416,0004	LC
ADRA1B	EIF3F	26497985	0004	LC
EIF3F	MTOR	16541103,16541103,16541103	0096,0007,0018	LC
EIF3F	CHAF1A	26365490	0004	LC

PPI - Mentha
Protein A	Protein B	Gene A	Gene B	Score	PMID
Q9DCH4	P62259	EIF3F	YWHAE	0.081	16615898
Q9DCH4	P23116	EIF3F	EIF3A	0.376	17581632
Q9DCH4	Q921E6	EIF3F	EED	0.332	20064375,24457600
Q9DCH4	Q9CPU7	EIF3F	FBXO32	0.396	18354498,22673621
Q9DCH4	Q08460	EIF3F	KCNMA1	0.332	19423573
Q9JLN9	Q9DCH4	MTOR	EIF3F	0.569	16541103
Q9EQC1	Q9DCH4	HSD3B7	EIF3F	0.081	16615898
Q9QWF0	Q9DCH4	CHAF1A	EIF3F	0.126	26365490
Q9DCH4	P63101	EIF3F	YWHAZ	0.081	16615898