DNA & RNA Element - AREsite Gene Name Motif CDS Area ARE Area Evidence Rnf126 ATTTA 98-1039 1558-1562

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004521 mmu-miR-15b* 70294 Rnf126 aucUCGUCGUUU----AUUACUAAGc :|||| |:: | ||||||: aacGGCAGAAGGGUUUUUAUGAUUUu 2 20 257 282 [mm9:10:79221550-79221575:-] 0.6147 130 0 -10.85 -0.1117 MIMAT0004534 mmu-miR-145* 70294 Rnf126 guuCUUGUCAUAAAGGUCCUUa || ||| | ||||||| gguGACCAGCAGACCCAGGAAc 2 20 438 459 [mm9:10:79221373-79221394:-] 0.5814 155 7 -14.44 -0.3332 MIMAT0004537 mmu-miR-154* 70294 Rnf126 uuauccaguuggcacAUACUAa |||||| cggcagaaggguuuuUAUGAUu 2 8 259 280 [mm9:10:79221552-79221573:-] 0.6147 120 6 -8.42 -0.1457 MIMAT0000217 mmu-miR-188-5p 70294 Rnf126 ggGAGGUGGUACGUUCCCUac :|:: :: | :|||||| auUUUUUUUUUUUAAGGGAaa 3 20 478 498 [mm9:10:79221334-79221354:-] 0.5814 127 0 -10.35 -0.1119 MIMAT0000367 mmu-miR-291a-5p 70294 Rnf126 ucucucccggaGGUGAAACUac |::|||||| uuaaauuauuaCUGCUUUGAaa 3 12 281 302 [mm9:10:79221530-79221551:-] 0.6147 127 0 -8.61 -0.1770 MIMAT0004573 mmu-miR-293* 70294 Rnf126 guUUUACAGUGUGUCAAACUCa ||||| || ||||||| auAAAUG---GAC-GUUUGAGc 2 21 302 319 [mm9:10:79221513-79221530:-] 0.6147 146 7 -13.11 -0.2600 MIMAT0004579 mmu-miR-302a* 70294 Rnf126 cguucauguuggugcAAAUUCa |||||| agacaauuuuuuuuuUUUAAGg 2 8 473 494 [mm9:10:79221338-79221359:-] 0.5814 120 6 -5.92 -0.1077 MIMAT0004631 mmu-miR-29a* 70294 Rnf126 gacuUGUGGUU---UUCUUUAGUCa ||||| | || ||| ||| aaauACACCUACUCAAAAAAGCAGa 2 19 524 548 [mm9:10:79221284-79221308:-] 0.5752 125 0 -8.70 -0.1142 MIMAT0004636 mmu-miR-93* 70294 Rnf126 gcccuuCACGAUCGAGUCGUCa ||| : ||||||| uggucuGUGGAGAGUCAGCAGa 2 17 336 357 [mm9:10:79221475-79221496:-] 0.5836 144 7 -19.97 -0.3524 MIMAT0000569 mmu-miR-330* 70294 Rnf126 agagacguccgggacACGAAACg ||||||| auuuuaaauuauuacUGCUUUGa 2 9 278 300 [mm9:10:79221532-79221554:-] 0.6147 140 7 -8.17 -1.2557 MIMAT0004781 mmu-miR-532-3p 70294 Rnf126 acGUUCGGAACCCACACC-CUCc || || | | ||||| ||| gcCAUGCAUGGUCUGUGGAGAGu 2 21 328 350 [mm9:10:79221482-79221504:-] 0.5836 124 0 -16.80 -0.1592 MIMAT0003189 mmu-miR-291b-5p 70294 Rnf126 ccucucccggaGGUGAAACUag |::|||||| uuaaauuauuaCUGCUUUGAaa 3 12 281 302 [mm9:10:79221530-79221551:-] 0.6147 127 0 -10.88 -0.1770 MIMAT0004188 mmu-miR-802 70294 Rnf126 uuccUACUUAGA---AACAAUGACu |||| |:| || |||||| uuuuAUGAUUUUAAAUUAUUACUGc 2 19 271 295 [mm9:10:79221537-79221561:-] 0.6147 129 6 -6.84 -0.2250 MIMAT0004188 mmu-miR-802 70294 Rnf126 uuCCUACUUAGAAACAAU-GACu ||| ||| | ||||| ||| agGGA--AAUGUGUGUUAUCUGg 2 21 492 512 [mm9:10:79221320-79221340:-] 0.5814 125 0 -13.69 -0.9913 MIMAT0003894 mmu-miR-764-5p 70294 Rnf126 uccuCCUGUACACUC-GUGg ||||:| |||| ||| aaauGGACGUUUGAGCCACg 2 16 304 323 [mm9:10:79221509-79221528:-] 0.5991 127 0 -17.15 -0.4146 MIMAT0003449 mmu-miR-488* 70294 Rnf126 aaCUCU-CACGAUAAUAGACCc || | ||| |:|||||||| ggGAAAUGUG-UGUUAUCUGGa 2 20 493 513 [mm9:10:79221319-79221339:-] 0.5814 160 7 -18.52 -1.2139 MIMAT0003461 mmu-miR-683 70294 Rnf126 cuccUGUGUCGAAU-GUCGUCc ||| :| | | |||||| gaccACAAGGGUGACCAGCAGa 2 18 429 450 [mm9:10:79221382-79221403:-] 0.5814 121 6 -13.21 -0.2588 MIMAT0004189 mmu-miR-693-3p 70294 Rnf126 aaUGUCGGUGUAG-ACUUUCGACg ||| |:|| || ||||| | auACACCUAC-UCAAAAAAGCAGa 2 22 526 548 [mm9:10:79221284-79221306:-] 0.5752 122 0 -12.06 -0.1500 MIMAT0004868 mmu-miR-343 70294 Rnf126 agacccguguACUUCCCUcu | |||||| uuuuuuuuuuUUAAGGGAaa 3 11 479 498 [mm9:10:79221334-79221353:-] 0.5814 122 0 -6.94 -0.1119 MIMAT0007874 mmu-miR-1904 70294 Rnf126 ggaGGGAG-GUCUCCUCGUCUug ||: | || | |||||| acaCCUACUCAAAAAAGCAGA-- 3 20 528 548 [mm9:10:79221284-79221304:-] 0.5752 130 0 -15.77 -0.1864 MIMAT0009404 mmu-miR-1940 70294 Rnf126 uugacgAGGUGGAA---GAGUCAGGAGGUa |||::||| |||| |||||| cuucagUCCGUCUUAACCUCA-CCCUCCAa 2 22 222 250 [mm9:10:79221582-79221610:-] 0.6147 134 6 -24.73 -0.1215 MIMAT0014852 mmu-miR-3072* 70294 Rnf126 ggacgggaggGAGC-CCCAGGGa | || ||||||| uggaggugugCACGUGGGUCCCa 2 13 179 201 [mm9:10:79221631-79221653:-] 0.5512 143 7 -20.77 -0.5416 MIMAT0015643 mmu-miR-3472 70294 Rnf126 ccaaggaaggucgaagacCGAUAAu |||||| auguguguuaucuggaaaGCUAUUu 2 8 498 522 [mm9:10:79221310-79221334:-] 0.5783 120 6 -10.19 -0.1438 MIMAT0000237 mmu-miR-204 70294 Rnf126 uccguauccuacuguUUCCCUu |||||| caauuuuuuuuuuuuAAGGGAa 2 8 476 497 [mm9:10:79221335-79221356:-] 0.5814 120 6 -9.45 -0.1936 MIMAT0000366 mmu-miR-290-5p 70294 Rnf126 uuucacggggguauCAAACUCa ||||||| ugaaauaaauggacGUUUGAGc 2 9 298 319 [mm9:10:79221513-79221534:-] 0.6147 140 7 -8.16 -0.2830 MIMAT0000369 mmu-miR-292-5p 70294 Rnf126 guuuucucggggguCAAACUCa ||||||| ugaaauaaauggacGUUUGAGc 2 9 298 319 [mm9:10:79221513-79221534:-] 0.6147 140 7 -9.11 -0.2782 MIMAT0000520 mmu-miR-208a 70294 Rnf126 uguucGAAAAACGAGCAGAAUa | || |: ||||||| aggcaCCUUCAGUCCGUCUUAa 2 18 216 237 [mm9:10:79221595-79221616:-] 0.6147 149 7 -10.66 -0.5577 MIMAT0000528 mmu-miR-18a 70294 Rnf126 gaUAGACGUGAUC--UACGUGGAAu :|| || || | ||||||| auGUCCCCAGCAGGCAGGCACCUUc 2 22 201 225 [mm9:10:79221607-79221631:-] 0.6147 148 7 -16.50 -0.3387 MIMAT0000668 mmu-miR-211 70294 Rnf126 uccguuuccuacuguUUCCCUu |||||| caauuuuuuuuuuuuAAGGGAa 2 8 476 497 [mm9:10:79221335-79221356:-] 0.5814 120 6 -9.45 -0.1954 MIMAT0004858 mmu-miR-18b 70294 Rnf126 gauuGUCGUGAUCUACGUGGAAu ||||| : | ||||||| ucccCAGCA-GGCAGGCACCUUc 2 20 204 225 [mm9:10:79221607-79221628:-] 0.6147 153 7 -17.14 -0.3387 MIMAT0004939 mmu-miR-208b 70294 Rnf126 uguuUGGAAAACAAGCAGAAUa ||||| || ||||||| aggcACCUUCAGUCCGUCUUAa 2 19 216 237 [mm9:10:79221595-79221616:-] 0.6147 166 7 -16.62 -0.5505

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G055898 Rnf126 Mus musculus 70294 19536157 0 0 R43565; MOUSE$RNF126_01; Binding factors: mmu-miR-193a-3p , mmu-miR-193b-3p // 0 0 R43567; MOUSE$RNF126_02; Binding factors: mmu-miR-124-3p // 0 0 R43572; MOUSE$RNF126_03; Binding factors: mmu-miR-125a-5p , mmu-miR-125b-5p , mmu-miR-339-5p , mmu-miR-351-5p , mmu-miR-670-3p

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Rnf126 mghv-miR-M1-9 beg:489 end:503 pic:3' TTTTTCCAGGTCCGTTTACACT 5'& ||| ||||||| &5' ----------AGGGAAATGTG- 3' Rnf126 mmu-miR-2861 beg:356 end:373 pic:3' GGCGGGCGGCGGTCCGGGG 5'& |.|.|||||||||| &5' ----CTGTCGCCAGGCCC- 3' Rnf126 mmu-miR-669h-5p beg:320 end:337 pic:3' CGTGAGTTGATATGTGGGTACGTA 5'& .|.|. |||||||| &5' ----------GTGCGGCCATGCAT 3' Rnf126 mmu-miR-208b beg:218 end:237 pic:3' TGTTTGGAAAACAAGCAGAATA 5'& ||||| || ||||||| &5' ----ACCTTCAGTCCGTCTTA- 3' Rnf126 mmu-miR-208a beg:224 end:237 pic:3' TGTTCGAAAAACGAGCAGAATA 5'& | ||||||| &5' -----------GTCCGTCTTA- 3' Rnf126 mmu-miR-18a beg:207 end:225 pic:3' GATAGACGTGATCTACGTGGAAT 5'& ||| ||||||| &5' ------GCAGGCAG-GCACCTT- 3' Rnf126 mmu-miR-3072star beg:182 end:201 pic:3' GGACGGGAGGGAGC-CCCAGGGA 5'& | . | | || ||||||| &5' ---GGTGTGCA-CGTGGGTCCC- 3' Rnf126 mmu-miR-293star beg:301 end:319 pic:3' GTTTTACAGTGTGTCAAACTCA 5'& ||||| || ||||||| &5' --AAATGG---AC-GTTTGAG- 3' Rnf126 mcmv-miR-m107-1-5p beg:423 end:445 pic:3' CCACTGAGCTCTG-----CTCACTGGC 5'& ||||.||| |.|||||| &5' -----CTCGGGACCACAAGGGTGACC- 3' Rnf126 mcmv-miR-M23-2 beg:188 end:210 pic:3' GGCGAACTGGCTCCGGGGGTA 5'& ||. | || |.||||| &5' -CGTGGGTCCCATGTCCCCA- 3' Rnf126 mcmv-miR-m88-1star beg:20 end:36 pic:3' GGCTACAGTCCCCCAGCCAGTA 5'& |||| |.|||||| &5' ---------GGGGTTTGGTCAT 3' Rnf126 mmu-miR-1188 beg:362 end:385 pic:3' AGGACCGGGTTGGA--GTGTGGT 5'& || ||||||.|| ||||| &5' -CCAGGCCCAGCCCGCCACAC-- 3' Rnf126 mmu-miR-132 beg:76 end:95 pic:3' GCTGGTACCGACATCTGACAAT 5'& .||||||||||.|||| &5' --GCCATGGCTGTGGACT---- 3' Rnf126 mmu-miR-145star beg:438 end:459 pic:3' GTTCTTGTCATAAAGGTCCTTA 5'& || ||| ||||||| &5' ---GACCAGCAGACCCAGGAA- 3' Rnf126 mmu-miR-15bstar beg:260 end:282 pic:3' ATCTCGTCGT-TTAT---TACTAAGC 5'& |||| ..| ||||||. &5' ----GCAGAAGGGTTTTTATGATTT- 3' Rnf126 mmu-miR-1839-3p beg:180 end:199 pic:3' CGACAACCATCTATTCATCCAGA 5'& |||. ||.|||| &5' ------GGTGTGCACGTGGGTC- 3' Rnf126 mmu-miR-18b beg:205 end:225 pic:3' GATTGTCGTGATCTACGTGGAAT 5'& ||||| ||||||| &5' ----CAGCAGGCAG-GCACCTT- 3' Rnf126 mmu-miR-1904 beg:336 end:360 pic:3' GGAGGGAGGTCTCC-TCGTCTTG 5'& ||. | |||| |||||||| &5' --TCTGTGGAGAGTCAGCAGAAC 3' Rnf126 mmu-miR-1933-5p beg:70 end:88 pic:3' TTTGATTCTGGCTTGTGGTACTGA 5'& ||| |.|||||.|| &5' ---------CCGCCCGCCATGGCT 3' Rnf126 mmu-miR-193star beg:443 end:455 pic:3' AGTAGAACGGGCGTTTCTGGGT 5'& || ||||||| &5' -----------GC--AGACCCA 3' Rnf126 mmu-miR-1940 beg:228 end:250 pic:3' TTGACGAGGTGGAA---GAGTCAGGAGGTA 5'& || ||| |||| |||||| &5' -------CCGTCTTAACCTCAC-CCTCCA- 3' Rnf126 mmu-miR-1956 beg:136 end:159 pic:3' AGGCGACTGA--GTCGGGACCTGA 5'& |||| | ||| |.|||||| &5' ---GCTG-CGGGCAGGCTTGGACT 3' Rnf126 mmu-miR-1982.2 beg:424 end:443 pic:3' GACACCCTCTTGTATCCCACT 5'& |||| ||| ||||||| &5' ----GGGACCACA-AGGGTGA 3' Rnf126 mmu-miR-19astar beg:499 end:520 pic:3' CATCACGTTGATACGTTTTGAT 5'& |||. | || |||.||| &5' ---GTGTTA-TCTGGAAAGCTA 3' Rnf126 mmu-miR-2132 beg:55 end:70 pic:3' GTAGCGCAGTTGTGGGCGG 5'& | || |.|||||| &5' ------G-CACCGCCCGCC 3' Rnf126 mmu-miR-2136 beg:24 end:44 pic:3' GTGTAGAGTCAGTT--GTGGGTC 5'& .| |||| |||||| &5' -----TTTGGTCATCCCACCCA- 3' Rnf126 mmu-miR-2145 beg:361 end:380 pic:3' TTGGTCCGGGCTGGGACGA 5'& .|||||||| .||| || &5' -GCCAGGCCCAGCCC-GC- 3' Rnf126 mmu-miR-214star beg:129 end:152 pic:3' CGTGTCGTTC-ACATCTGTCCGT 5'& | .| ||.| || |.||||| &5' GGGCCCCAGGCTGCGGGCAGGC- 3' Rnf126 mmu-miR-214star beg:205 end:221 pic:3' CGTGTCGTTCACATCTGTCCGT 5'& |||| ||.|||||| &5' ---CAGC------AGGCAGGCA 3' Rnf126 mmu-miR-24 beg:304 end:322 pic:3' GACAAGGACGACTTG---ACTCGGT 5'& ||.|| ||||||| &5' ----------TGGACGTTTGAGCCA 3' Rnf126 mmu-miR-2861 beg:58 end:79 pic:3' GGCGGGCGG-CGGTCCGGGG 5'& ||||||||| ||| |||| &5' CCGCCCGCCTGCCC-GCCC- 3' Rnf126 mmu-miR-346 beg:133 end:152 pic:3' TCTCCGTCCGTGAGCCCGTCTGT 5'& ||||| |||||||.| &5' -----CAGGCTG-CGGGCAGGC- 3' Rnf126 mmu-miR-346 beg:462 end:478 pic:3' TCTCCGTCCGTGAGCCCGTCTGT 5'& .||| ||||||| &5' ----------GCTCCAGCAGACA 3' Rnf126 mmu-miR-370 beg:191 end:216 pic:3' TGGTCCAAGGT---GGGGTCGTCCG 5'& .||| ||| ||||||||||| &5' ---GGGTCCCATGTCCCCAGCAGGC 3' Rnf126 mmu-miR-375 beg:443 end:463 pic:3' AGTGCGCTC-GGCTTGCTTGTTT 5'& || || || | ||||||| &5' ----GC-AGACCC-AGGAACAAA 3' Rnf126 mmu-miR-469 beg:380 end:397 pic:3' CCTGTGGTTCTAGTTACTTTCTCCGT 5'& ||.|| ..||||| &5' --ACGCCCT---------GGGAGGC- 3' Rnf126 mmu-miR-470 beg:437 end:459 pic:3' TGAGTGGTCAC-GGTCA----GGTTCTT 5'& .||| |||| |||.||| &5' -------GGTGACCAGCAGACCCAGGAA 3' Rnf126 mmu-miR-485 beg:413 end:427 pic:3' CTTAAGTAGTGCCGGTCGGAGA 5'& .| |||.||||| &5' ---------GC-GCCGGCCTC- 3' Rnf126 mmu-miR-493 beg:204 end:227 pic:3' GGACCGTGTGTCATCCTGGAAGT 5'& || ||| .||| ||||||| &5' CCCAGCAGGCAGGC--ACCTTCA 3' Rnf126 mmu-miR-544 beg:249 end:267 pic:3' CTCGAACGATTTTTACGTCTTA 5'& ||.| || |||||| &5' -----TGTTCAACG-GCAGAA- 3' Rnf126 mmu-miR-582-3p beg:245 end:262 pic:3' AACCCAAGTCAACAAGTTGTCC 5'& || ||||||||.| &5' -------CAAATGTTCAACGG- 3' Rnf126 mmu-miR-673-3p beg:366 end:393 pic:3' CCACGTGTCTTGA---GT-CGGGGCCT 5'& || ||| | || ||||.||. &5' ---GCCCAGCCCGCCACACGCCCTGGG 3' Rnf126 mmu-miR-696 beg:202 end:220 pic:3' GGGTGTCGTTCGTGTGCG 5'& ||| |||||.||| .| &5' CCC-CAGCAGGCAGGC-- 3' Rnf126 mmu-miR-705 beg:26 end:48 pic:3' ACGGGTGGGGTGGAGGGTGG 5'& || .||.|||||| || || &5' TGGTCATCCCACCCACC-CC 3' Rnf126 mmu-miR-705 beg:228 end:250 pic:3' ACGGG--TGGGGTGGAGGGTGG 5'& |.|. |||.|||| ||| &5' -GTCTTAACCTCACCCTCCA-- 3' Rnf126 mmu-miR-705 beg:366 end:388 pic:3' ACGGGTGGGGTGGAGGGTGG 5'& ||||| |||.|| | |.|| &5' -GCCCAGCCCGCCACACGCC 3' Rnf126 mmu-miR-711 beg:188 end:201 pic:3' GAATGTAGAGAGGGGCCCAGGG 5'& | .||||||| &5' ------------CGTGGGTCCC 3' Rnf126 mmu-miR-762 beg:356 end:378 pic:3' CGAGACAG-GGCCGGGGTCGGGG 5'& ||||| || | |||||||| &5' ---CTGTCGCCAGGCCCAGCCC- 3' Rnf126 mmu-miR-875-5p beg:170 end:189 pic:3' GTGGACTATTTTGACTCCATAT 5'& |||| |||||.|. &5' --CCTGTTTG----GAGGTGTG 3' Rnf126 mmu-miR-93star beg:339 end:357 pic:3' GCCCTTCACGATCG-AGTCGTCA 5'& ||| || ||||||| &5' ------GTGG-AGAGTCAGCAG- 3' Rnf126 mmu-miR-488star beg:497 end:513 pic:3' AACTCTCACGATAATAGACCC 5'& ||| |.|||||||| &5' ------GTG-TGTTATCTGG- 3' Rnf126 mmu-miR-1938 beg:0 end:9 pic:3' CTGGCTTGATGTTCAGGGTGGC 5'& |||||||| &5' -------------GTCCCACC- 3' Rnf126 mmu-miR-1938 beg:32 end:42 pic:3' CTGGCTTGATGTTCAGGGTGGC 5'& ||||||| &5' --------------TCCCACC- 3'

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Rnf126 RAID00345243 mmu-miR-6240 miRNA MIMAT0024861 Rnf126 mRNA 70294 Prediction 0.2202 Rnf126 RAID00469189 mmu-miR-6975-5p miRNA MIMAT0027852 Rnf126 mRNA 70294 Prediction 0.1828 Rnf126 RAID02039147 mmu-miR-204-5p miRNA MIMAT0000237 Rnf126 mRNA 70294 Prediction 0.1828 Rnf126 RAID02395733 mmu-miR-208a-3p miRNA MIMAT0000520 Rnf126 mRNA 70294 Prediction 0.1828 Rnf126 RAID02613031 mmu-miR-290a-5p miRNA MIMAT0000366 Rnf126 mRNA 70294 Prediction 0.1828 Rnf126 RAID02860650 mmu-miR-18a-5p miRNA MIMAT0000528 Rnf126 mRNA 70294 Prediction 0.1828 Rnf126 RAID03189686 mmu-miR-330-3p miRNA MIMAT0000569 Rnf126 mRNA 70294 Prediction 0.1828 Rnf126 RAID03211282 mmu-miR-5627-5p miRNA MIMAT0022385 Rnf126 mRNA 70294 Prediction 0.1828 Rnf126 RAID03416664 mmu-miR-211-5p miRNA MIMAT0000668 Rnf126 mRNA 70294 Prediction 0.1828 Rnf126 RAID03695843 mmu-miR-8108 miRNA MIMAT0031413 Rnf126 mRNA 70294 Prediction 0.1828 Rnf126 RAID03724903 mmu-miR-292a-5p miRNA MIMAT0000369 Rnf126 mRNA 70294 Prediction 0.1828 Rnf126 RAID03761771 mmu-miR-7240-3p miRNA MIMAT0028449 Rnf126 mRNA 70294 Prediction 0.1828 Rnf126 RAID03826022 mmu-miR-7029-3p miRNA MIMAT0027963 Rnf126 mRNA 70294 Prediction 0.1828 Rnf126 RAID03923272 mmu-miR-208b-3p miRNA MIMAT0004939 Rnf126 mRNA 70294 Prediction 0.1828 Rnf126 RAID03931292 mmu-miR-18b-5p miRNA MIMAT0004858 Rnf126 mRNA 70294 Prediction 0.1828 Rnf126 RAID03986628 mmu-miR-7005-5p miRNA MIMAT0027914 Rnf126 mRNA 70294 Prediction 0.1828 Rnf126 RAID04007169 mmu-miR-488-5p miRNA MIMAT0003449 Rnf126 mRNA 70294 Prediction 0.1828