DNA & RNA Element - AREsite Gene Name Motif CDS Area ARE Area Evidence Fbxo48; Fbx48 ATTTA 1195-1680 1759-1763;1766-1770;1923-1927;1960-1964;1977-1981;1993-1997;2018-2022;2090-2094;2107-2111 Fbxo48; Fbx48 WWATTTAWW 1195-1680 2016-2024;2088-2096 Fbxo48; Fbx48 WWWATTTAWWW 1195-1680 2087-2097 Fbxo48; Fbx48 WWWWATTTAWWWW 1195-1680 2086-2098

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004620 mmu-let-7a* 319701 Fbxo48 ccUUUCUGUCAUCUAACA-UAUc |||| ||||| |||| ||| ucAAAGUAAGUAG-UUGUAAUAu 2 21 388 409 [mm9:11:16854726-16854747:+] 0.5438 134 0 -11.48 -1.1187 MIMAT0004621 mmu-let-7b* 319701 Fbxo48 cccUUCCGUCAUCCAACA-UAUc ||| |||| ||||| ||| ucaAAGUAAGUA-GUUGUAAUAu 2 20 388 409 [mm9:11:16854726-16854747:+] 0.5438 129 0 -10.80 -1.1333 MIMAT0005439 mmu-let-7c-2* 319701 Fbxo48 ccUUUCUGUCAUCUAACA-UAUc |||| ||||| |||| ||| ucAAAGUAAGUAG-UUGUAAUAu 2 21 388 409 [mm9:11:16854726-16854747:+] 0.5438 134 0 -11.48 -1.1187 MIMAT0004623 mmu-let-7f* 319701 Fbxo48 cccUUCCGUUAUCUAACA-UAUc ||| |:||| |||| ||| ucaAAGUAAGUAG-UUGUAAUAu 2 20 388 409 [mm9:11:16854726-16854747:+] 0.5438 125 0 -8.58 -1.1187 MIMAT0000549 mmu-miR-322* 319701 Fbxo48 cacaacgucgcgaaGUACAAa |||||| ugauaauaaauuuaCAUGUU- 2 8 418 437 [mm9:11:16854756-16854775:+] 0.5676 120 6 -5.40 -0.6878 MIMAT0004647 mmu-miR-338-5p 319701 Fbxo48 guGAGUCGUGGUCCUAUAACaa :|:| ::::|| |||||| uaUUUA-UGUUAGAAUAUUGaa 3 21 242 262 [mm9:11:16854580-16854600:+] 0.4911 134 0 -11.95 -0.1690 MIMAT0004659 mmu-miR-10a* 319701 Fbxo48 auaaggggaucuaugCUUAAAc |||||| uuacuugaagugauaGAAUUUa 2 8 263 284 [mm9:11:16854601-16854622:+] 0.4911 120 6 -7.33 -0.1491 MIMAT0004665 mmu-miR-218-1* 319701 Fbxo48 ccacgaacugccuugGUACAAa |||||| uugauaauaaauuuaCAUGUU- 2 8 417 437 [mm9:11:16854755-16854775:+] 0.5676 120 6 -5.50 -0.6841 MIMAT0004666 mmu-miR-33* 319701 Fbxo48 caCUACGU--GACACCUUUGUAAc || | | :| | ||||||| uuGAAGAAACUUAUUUAAACAUUc 2 21 326 349 [mm9:11:16854664-16854687:+] 0.4699 143 7 -5.91 -1.1490 MIMAT0004666 mmu-miR-33* 319701 Fbxo48 cacuacgugacaccuUUGUAAc |||||| gccuuuuaaguauuuAACAUUu 2 8 68 89 [mm9:11:16854406-16854427:+] 0.4634 120 6 -5.25 -0.1380 MIMAT0001090 mmu-miR-409-3p 319701 Fbxo48 uccccAAGUGGCUCGUUGUAAg || | : :|||||| gccuuUUAAGUAUUUAACAUUu 2 18 68 89 [mm9:11:16854406-16854427:+] 0.4634 125 6 -5.71 -0.1366 MIMAT0001090 mmu-miR-409-3p 319701 Fbxo48 uccccaaguggcucgUUGUAAg |||||| gaagaaacuuauuuaAACAUUc 2 8 328 349 [mm9:11:16854666-16854687:+] 0.4699 120 6 -7.61 -0.2228 MIMAT0001093 mmu-miR-411* 319701 Fbxo48 ccaaucaccuggcacAAUGUAu |||||| aaauugauaauaaauUUACAUg 2 8 414 435 [mm9:11:16854752-16854773:+] 0.5676 120 6 -6.21 -0.3045 MIMAT0002111 mmu-miR-470 319701 Fbxo48 ugagUGGUCACGGUCAGGUUCUu |:|| | | ||||||| caaaAUCACUCGGACUCCAAGAu 2 20 17 39 [mm9:11:16854355-16854377:+] 0.4582 151 7 -16.19 -0.3269 MIMAT0004760 mmu-miR-470* 319701 Fbxo48 agaagagucuuuccaUGACCAa |||||| uauaagaaauaauagACUGGUa 2 8 192 213 [mm9:11:16854530-16854551:+] 0.5233 120 6 -10.83 -0.2470 MIMAT0003186 mmu-miR-369-3p 319701 Fbxo48 uuucuaguuGGUACAU-AAUAa ||||||| |||| uguauugcuCCAUGUAUUUAUg 2 13 228 249 [mm9:11:16854566-16854587:+] 0.4911 124 0 -11.57 -0.8727 MIMAT0003190 mmu-miR-291b-3p 319701 Fbxo48 uguuuguuuuaccuACGUGAaa |||||| cuuuguuuguauuuUGCACUca 3 9 116 137 [mm9:11:16854454-16854475:+] 0.5231 120 0 -6.21 -0.2572 MIMAT0003373 mmu-miR-302b* 319701 Fbxo48 ucuuuCGUAAGGGUACAAUUUca ||| |:|| |||||| auuuuGCA--CUCAAGUUAAAaa 3 19 126 146 [mm9:11:16854464-16854484:+] 0.5555 135 0 -8.32 -0.1939 MIMAT0003375 mmu-miR-302c* 319701 Fbxo48 cguccauugGGGUACAAUUUcg |:|| |||||| uauuuugcaCUCAAGUUAAAaa 3 14 125 146 [mm9:11:16854463-16854484:+] 0.5231 133 0 -7.75 -0.1660 MIMAT0003462 mmu-miR-684 319701 Fbxo48 aacUG-AACUUCCCUUUUGa || || || |||||| uuaACAUUUAAAAGAAAACa 2 17 81 100 [mm9:11:16854419-16854438:+] 0.4634 123 6 -4.04 -0.1851 MIMAT0003469 mmu-miR-690 319701 Fbxo48 aaaccaacacucGGAUCGGAAa |:||||||| gauaaugucuuuCUUAGCCUUu 2 11 52 73 [mm9:11:16854390-16854411:+] 0.4277 146 7 -14.61 -0.9449 MIMAT0003494 mmu-miR-704 319701 Fbxo48 gauccucgucucGUGUACAGa :||||||: ugauaauaaauuUACAUGUU- 2 10 418 437 [mm9:11:16854756-16854775:+] 0.5676 125 0 -6.96 -0.6098 MIMAT0004238 mmu-miR-743a 319701 Fbxo48 agaUGAGUCGAACCACAGAAAg | || | | ||||||| ugaAAUCUG-AUAAUGUCUUUc 2 20 44 64 [mm9:11:16854382-16854402:+] 0.4277 141 7 -11.22 -0.8981 MIMAT0004840 mmu-miR-743b-3p 319701 Fbxo48 agaUAAGUCGUACUACAGAAAg | || | || |||||||| ugaAAUCUG-AUAAUGUCUUUc 2 20 44 64 [mm9:11:16854382-16854402:+] 0.4277 157 7 -12.97 -0.9014 MIMAT0004867 mmu-miR-327 319701 Fbxo48 uaggaguacgggGAGUUCa |||||| uuguauuuugcaCUCAAGu 2 8 122 140 [mm9:11:16854460-16854478:+] 0.5231 120 6 -13.56 -0.1235 MIMAT0004888 mmu-miR-493 319701 Fbxo48 ggaccgugugucauccUGGAAGu |||||| guuguuuucuauuuaaACCUUCa 2 8 287 309 [mm9:11:16854625-16854647:+] 0.4995 120 6 -12.08 -0.1405 MIMAT0005830 mmu-miR-466l 319701 Fbxo48 uuAUACAC-ACGUACAUAAAUAu ||| || | ||||||||||| ugUAU-UGCUCCAUGUAUUUAUg 2 21 228 249 [mm9:11:16854566-16854587:+] 0.4911 169 7 -14.27 -0.5810 MIMAT0005830 mmu-miR-466l 319701 Fbxo48 uuAUACACACGUACAUAAAUau || ||| || |||||| agUAGUUGU-AAUAUAUUUAaa 3 21 396 416 [mm9:11:16854734-16854754:+] 0.5676 134 0 -4.24 -0.3208 MIMAT0005830 mmu-miR-466l 319701 Fbxo48 uuauacacacguacAUAAAUau |||||| uuuuugaagaaacuUAUUUAaa 3 9 323 344 [mm9:11:16854661-16854682:+] 0.4699 120 0 -0.97 -0.1190 MIMAT0007866 mmu-miR-1905 319701 Fbxo48 gauggcgcaccaccCUGACCAc ||||||| uauaagaaauaauaGACUGGUa 2 9 192 213 [mm9:11:16854530-16854551:+] 0.5233 140 7 -12.59 -1.2847 MIMAT0009446 mmu-miR-1971 319701 Fbxo48 agagucGGGUCGGAAAug |::||||||| gucuuuCUUAGCCUUUua 3 13 58 75 [mm9:11:16854396-16854413:+] 0.4277 132 0 -15.75 -0.1204 MIMAT0009458 mmu-miR-1981 319701 Fbxo48 cggUGCAGAUUCGGGUCGGAAAug |:|||| |::||||||| auaAUGUCU-UUCUUAGCCUUUua 3 22 53 75 [mm9:11:16854391-16854413:+] 0.4277 143 0 -21.71 -0.1216 MIMAT0012771 mmu-miR-432 319701 Fbxo48 gacgGGUGACUAGAUGAGGUUCu :|||| : |||||||| aaaaUCACUCG--GACUCCAAGa 2 20 18 38 [mm9:11:16854356-16854376:+] 0.4582 148 7 -21.38 -0.8336 MIMAT0015640 mmu-miR-3470a 319701 Fbxo48 ggucggaccagaUGUUUCAcu ||||||| auuuaaaagaaaACAAAGUug 3 10 86 106 [mm9:11:16854424-16854444:+] 0.4908 125 0 -9.36 -0.1357 MIMAT0015640 mmu-miR-3470a 319701 Fbxo48 ggucggaCCAGAU-GUUUCAcu || || |||||| ucaugggGGAAUAUCAAAGUaa 3 15 375 396 [mm9:11:16854713-16854734:+] 0.5438 125 0 -8.63 -0.1171 MIMAT0000123 mmu-miR-1 319701 Fbxo48 uaUGUAUGAAGAAA--UGUAAGgu | | |||| ||| |||||| gaAGAAACUUAUUUAAACAUUCau 3 21 328 351 [mm9:11:16854666-16854689:+] 0.4699 143 0 -9.34 -0.1150 MIMAT0000141 mmu-miR-130a 319701 Fbxo48 uaCGGGA-AAAU-UGUAACGUGAc ||::| |||: |: ||||||| aaGCUUUGUUUGUAUUUUGCACUc 2 21 113 136 [mm9:11:16854451-16854474:+] 0.5231 158 7 -14.07 -1.1193 MIMAT0000162 mmu-miR-152 319701 Fbxo48 gguucAAGACAGUACGUGAcu || | |: |||||| uuuguUUGUAUUUUGCACUca 3 17 117 137 [mm9:11:16854455-16854475:+] 0.5231 132 0 -11.09 -0.2504 MIMAT0000239 mmu-miR-206 319701 Fbxo48 ggUGUGUGAAGGAA--UGUAAGgu | | |||| :|| |||||| gaAGAAACUUAUUUAAACAUUCau 3 21 328 351 [mm9:11:16854666-16854689:+] 0.4699 139 0 -9.52 -0.1162 MIMAT0000379 mmu-miR-301a 319701 Fbxo48 cgAAACUGUUAUGAUAACGUGAc |||| : :||:| ||||||| gcUUUGUUUGUAUU-UUGCACUc 2 22 115 136 [mm9:11:16854453-16854474:+] 0.5231 163 7 -18.36 -1.1087 MIMAT0000387 mmu-miR-130b 319701 Fbxo48 uaCGGGA-AAGUA-GUAACGUGAc ||::| ||::| : ||||||| aaGCUUUGUUUGUAUUUUGCACUc 2 21 113 136 [mm9:11:16854451-16854474:+] 0.5231 154 7 -14.60 -1.1215 MIMAT0000513 mmu-miR-19b 319701 Fbxo48 agUCAAAACGUACCU-AAACGUGu || ||||: || | ||||||| gaAGCUUUGUUUGUAUUUUGCACu 2 22 112 135 [mm9:11:16854450-16854473:+] 0.5231 168 7 -13.84 -1.0634 MIMAT0000516 mmu-miR-148a 319701 Fbxo48 uguuucaAGACAU--CACGUGAcu |:|||| |||||| agcuuugUUUGUAUUUUGCACUca 3 16 114 137 [mm9:11:16854452-16854475:+] 0.5231 130 0 -10.88 -0.2504 MIMAT0000520 mmu-miR-208a 319701 Fbxo48 ugUUCGAAAAACGAGCAGAAUa || ||||| || |||||| aaAAAAUUUUU-CUGGUCUUAu 2 21 142 162 [mm9:11:16854480-16854500:+] 0.5555 138 6 -12.48 -0.1008 MIMAT0000533 mmu-miR-26a 319701 Fbxo48 ucggaUAGGACCUAAUGAACUu || :|| ||||||||| uuagaAUAUUGAAUUACUUGAa 2 18 250 271 [mm9:11:16854588-16854609:+] 0.4911 165 7 -14.62 -1.2139 MIMAT0000534 mmu-miR-26b 319701 Fbxo48 uggaUAGGACUUAAUGAACUu || :|||||||||||| uagaAUAUUGAAUUACUUGAa 2 18 251 271 [mm9:11:16854589-16854609:+] 0.4911 173 7 -18.49 -1.2139 MIMAT0000580 mmu-miR-148b 319701 Fbxo48 uguuucAAGACACUACGUGAcu || | | |||||| cuuuguUUGUAUUUUGCACUca 3 17 116 137 [mm9:11:16854454-16854475:+] 0.5231 128 0 -10.01 -0.2504 MIMAT0004651 mmu-miR-340-5p 319701 Fbxo48 uuagUCAGAGUAACGAAAUAUu | | |:|| :|||||| augaAAUGUUAU--UUUUAUAa 2 19 177 196 [mm9:11:16854515-16854534:+] 0.5233 131 6 -4.62 -0.2076 MIMAT0000651 mmu-miR-19a 319701 Fbxo48 agUCAAAACGUAUCU-AAACGUGu || ||||: |: | ||||||| gaAGCUUUGUUUGUAUUUUGCACu 2 22 112 135 [mm9:11:16854450-16854473:+] 0.5231 164 7 -12.62 -1.0634 MIMAT0000657 mmu-miR-200c 319701 Fbxo48 aggUA-GUAAUGGGCCGU-CAUAAu || :|||:|:| || ||||| gaaAUGUAUUGCUC--CAUGUAUUu 2 21 224 246 [mm9:11:16854562-16854584:+] 0.4911 120 0 -11.14 -0.7136 MIMAT0000704 mmu-miR-361 319701 Fbxo48 caUGGGGACCUCUAAGACUAUu |: |:| || | ||||||| agAUACUUUGA-AAUCUGAUAa 2 21 36 56 [mm9:11:16854374-16854394:+] 0.4193 154 7 -13.12 -1.0733 MIMAT0001420 mmu-miR-433 319701 Fbxo48 ugugGCUCCUCGGGUAGUACUa | | |:| ||||||| uauaCUAUGGGGAAAUCAUGAa 2 19 160 181 [mm9:11:16854498-16854519:+] 0.5555 146 7 -19.68 -1.1766 MIMAT0003168 mmu-miR-543 319701 Fbxo48 uucuucacguggcgcUUACAAa |||||| auggggaaaucaugaAAUGUUa 2 8 166 187 [mm9:11:16854504-16854525:+] 0.5555 120 6 -10.53 -0.1445 MIMAT0004186 mmu-miR-301b 319701 Fbxo48 cgAAACUGUUAUGGUAACGUGAc |||| : :||:: ||||||| gcUUUGUUUGUAUU-UUGCACUc 2 22 115 136 [mm9:11:16854453-16854474:+] 0.5231 159 7 -18.12 -1.1087 MIMAT0003727 mmu-miR-374 319701 Fbxo48 gugaaucguccaacaUAAUAUa |||||| cuuauuuaaacauucAUUAUAa 2 8 335 356 [mm9:11:16854673-16854694:+] 0.4950 120 6 -2.25 -0.2711 MIMAT0003482 mmu-miR-499 319701 Fbxo48 uuUGUAGUGACGUUCAGAAUu | ||: :| | :|||||| aaAAAUU-UUUCUGGUCUUAu 2 20 143 162 [mm9:11:16854481-16854500:+] 0.5555 133 6 -8.23 -0.1049 MIMAT0003515 mmu-miR-721 319701 Fbxo48 aaGGGGGAAA-AU-UAACGUGAc |::: ||| || ||||||| agCUUUGUUUGUAUUUUGCACUc 2 20 114 136 [mm9:11:16854452-16854474:+] 0.5231 149 7 -12.89 -1.1259 MIMAT0004324 mmu-miR-181d 319701 Fbxo48 uggguggCUGUUGUUAC-UUACAa |: ||: ||| ||||| acuauggGGAAAUCAUGAAAUGUu 2 17 163 186 [mm9:11:16854501-16854524:+] 0.5555 120 0 -13.80 -1.1039 MIMAT0004939 mmu-miR-208b 319701 Fbxo48 ugUUUGGAAAACAAGCAGAAUa ||| |||| | |||||| uaAAAAAUUUUUCUGGUCUUAu 2 21 141 162 [mm9:11:16854479-16854500:+] 0.5555 136 6 -10.93 -0.1028

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G064733 Fbxo48 Mus musculus 319701

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Fbxo48 RAID00037151 mmu-miR-208b-3p miRNA MIMAT0004939 Fbxo48 mRNA 319701 Prediction 0.1828 Fbxo48 RAID00111152 mmu-miR-6389 miRNA MIMAT0025137 Fbxo48 mRNA 319701 Prediction 0.1828 Fbxo48 RAID00142410 mmu-miR-6944-5p miRNA MIMAT0027788 Fbxo48 mRNA 319701 Prediction 0.1828 Fbxo48 RAID00349698 mmu-miR-690 miRNA MIMAT0003469 Fbxo48 mRNA 319701 Prediction 0.1828 Fbxo48 RAID00402325 mmu-miR-19b-3p miRNA MIMAT0000513 Fbxo48 mRNA 319701 Prediction 0.2381 Fbxo48 RAID00516140 mmu-miR-499-5p miRNA MIMAT0003482 Fbxo48 mRNA 319701 Prediction 0.1828 Fbxo48 RAID00603534 mmu-miR-206-3p miRNA MIMAT0000239 Fbxo48 mRNA 319701 Prediction 0.1828 Fbxo48 RAID00638732 mmu-miR-152-3p miRNA MIMAT0000162 Fbxo48 mRNA 319701 Prediction 0.1828 Fbxo48 RAID00649372 mmu-miR-130b-3p miRNA MIMAT0000387 Fbxo48 mRNA 319701 Prediction 0.2202 Fbxo48 RAID00813506 mmu-miR-19a-3p miRNA MIMAT0000651 Fbxo48 mRNA 319701 Prediction 0.2202 Fbxo48 RAID00869500 mmu-miR-6917-3p miRNA MIMAT0027735 Fbxo48 mRNA 319701 Prediction 0.1828 Fbxo48 RAID00892181 mmu-miR-148b-3p miRNA MIMAT0000580 Fbxo48 mRNA 319701 Prediction 0.1828 Fbxo48 RAID00903998 mmu-miR-208a-3p miRNA MIMAT0000520 Fbxo48 mRNA 319701 Prediction 0.1828 Fbxo48 RAID01110342 mmu-miR-301a-3p miRNA MIMAT0000379 Fbxo48 mRNA 319701 Prediction 0.2202 Fbxo48 RAID01430027 mmu-miR-26b-5p miRNA MIMAT0000534 Fbxo48 mRNA 319701 Prediction 0.2381 Fbxo48 RAID01440634 mmu-miR-361-5p miRNA MIMAT0000704 Fbxo48 mRNA 319701 Prediction 0.1828 Fbxo48 RAID01627867 mmu-miR-130a-3p miRNA MIMAT0000141 Fbxo48 mRNA 319701 Prediction 0.2202 Fbxo48 RAID01845485 mmu-miR-181d-5p miRNA MIMAT0004324 Fbxo48 mRNA 319701 Prediction 0.1828 Fbxo48 RAID01883027 mmu-miR-721 miRNA MIMAT0003515 Fbxo48 mRNA 319701 Prediction 0.2381 Fbxo48 RAID02015270 mmu-miR-148a-3p miRNA MIMAT0000516 Fbxo48 mRNA 319701 Prediction 0.1828 Fbxo48 RAID02130009 mmu-miR-543-3p miRNA MIMAT0003168 Fbxo48 mRNA 319701 Prediction 0.1828 Fbxo48 RAID02416373 mmu-miR-6341 miRNA MIMAT0025084 Fbxo48 mRNA 319701 Prediction 0.1828 Fbxo48 RAID02418529 mmu-miR-7060-5p miRNA MIMAT0028024 Fbxo48 mRNA 319701 Prediction 0.1828 Fbxo48 RAID02433238 mmu-miR-26a-5p miRNA MIMAT0000533 Fbxo48 mRNA 319701 Prediction 0.2202 Fbxo48 RAID02638163 mmu-miR-301b-3p miRNA MIMAT0004186 Fbxo48 mRNA 319701 Prediction 0.2202 Fbxo48 RAID02844129 mmu-miR-200c-3p miRNA MIMAT0000657 Fbxo48 mRNA 319701 Prediction 0.1828 Fbxo48 RAID02977762 mmu-miR-28a-3p miRNA MIMAT0004661 Fbxo48 mRNA 319701 Prediction 0.1828 Fbxo48 RAID03078282 mmu-miR-340-5p miRNA MIMAT0004651 Fbxo48 mRNA 319701 Prediction 0.1828 Fbxo48 RAID03293641 mmu-miR-374b-5p miRNA MIMAT0003727 Fbxo48 mRNA 319701 Prediction 0.1828 Fbxo48 RAID03658661 mmu-miR-466n-3p miRNA MIMAT0014894 Fbxo48 mRNA 319701 Prediction 0.1828 Fbxo48 RAID03779905 mmu-miR-130c miRNA MIMAT0025132 Fbxo48 mRNA 319701 Prediction 0.1828 Fbxo48 RAID03831089 mmu-miR-433-3p miRNA MIMAT0001420 Fbxo48 mRNA 319701 Prediction 0.2381 Fbxo48 RAID03943039 mmu-miR-7214-5p miRNA MIMAT0028396 Fbxo48 mRNA 319701 Prediction 0.1828 Fbxo48 RAID04022288 mmu-miR-1a-3p miRNA MIMAT0000123 Fbxo48 mRNA 319701 Prediction 0.1828