DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004663 mmu-miR-200c* 71829 Ddi1 gguuugugacgacccAUUCUGc |||||| ggcuucaggaaauuaUAAGACa 2 8 49 70 [mm9:9:6265071-6265092:-] 0.6030 120 6 -8.04 -0.1877 MIMAT0002109 mmu-miR-468 71829 Ddi1 gucUGUGUGCGUGUAGUCAGUAu :| ||| :|| |||||| ugaGCUCACUGGCA-AAGUCAUc 2 21 71 92 [mm9:9:6265049-6265070:-] 0.6130 122 6 -13.71 -0.1018 MIMAT0003470 mmu-miR-691 71829 Ddi1 aaaagaCGGAG--AGAAGUCCUUa ||||| ||||||||| aacaaaGCCUCAGGCUUCAGGAAa 2 17 37 60 [mm9:9:6265081-6265104:-] 0.6030 159 7 -23.65 -1.0433 MIMAT0003511 mmu-miR-450b-5p 71829 Ddi1 auaaGUCCUUGUAUGA-CGUUUu || ||:| ||| ||||| aagaCAUGAGCUCACUGGCAAAg 2 19 65 87 [mm9:9:6265054-6265076:-] 0.6130 126 0 -14.97 -0.9669 MIMAT0004842 mmu-miR-879 71829 Ddi1 ccgaaucucgauaUUCGGAGa ||||||| ccacaaggaaacaAAGCCUCa 2 9 28 48 [mm9:9:6265093-6265113:-] 0.6030 140 7 -11.63 -1.0848 MIMAT0004870 mmu-miR-453 71829 Ddi1 acguucgagugauacucCGUUGGa |||||| ucauuaaaaacaauuuaGCAACC- 2 8 91 113 [mm9:9:6265028-6265050:-] 0.6231 120 6 -9.84 -0.6665 MIMAT0000381 mmu-miR-34c 71829 Ddi1 cguuAGUCGAUUGAU---GUGACGGa |:| |||:|| ||||||| ggucUUACAUAAUUAUGCCACUGCCa 2 20 5 30 [mm9:9:6265111-6265136:-] 0.6030 154 7 -15.57 -0.9720 MIMAT0000382 mmu-miR-34b-5p 71829 Ddi1 uguuAGUCGAUUAAU---GUGACGGa |:| |||||| ||||||| ggucUUACAUAAUUAUGCCACUGCCa 2 20 5 30 [mm9:9:6265111-6265136:-] 0.6030 158 7 -15.36 -0.9720 MIMAT0000542 mmu-miR-34a 71829 Ddi1 uguUG-GUCGAUUCUGUGACGGu || :| :|| | ||||||| cuuACAUAAUUAUGCCACUGCCa 2 20 8 30 [mm9:9:6265111-6265133:-] 0.6030 154 7 -18.11 -0.9720 MIMAT0000653 mmu-miR-28 71829 Ddi1 gaguUA-UCUGACACUCGAG-GAa || |||| ||||||| || aauuAUAAGAC-AUGAGCUCACUg 2 19 59 81 [mm9:9:6265060-6265082:-] 0.6030 123 0 -16.58 -0.8016 MIMAT0001542 mmu-miR-449a 71829 Ddi1 uggucgAUUGUUAU-GUGACGGu |||: ||: ||||||| cuuacaUAAUUAUGCCACUGCCa 2 17 8 30 [mm9:9:6265111-6265133:-] 0.6030 155 7 -16.92 -0.9689 MIMAT0003460 mmu-miR-449c 71829 Ddi1 ggucgAUCGUUAC-GUGACGGa || : ||| ||||||| uuacaUAAUUAUGCCACUGCCa 2 17 9 30 [mm9:9:6265111-6265132:-] 0.6030 151 7 -13.78 -0.9750 MIMAT0005447 mmu-miR-449b 71829 Ddi1 cggucgAUUGUUGUGACGGa | |:: ||||||| acauaaUUAUGCCACUGCCa 2 15 11 30 [mm9:9:6265111-6265130:-] 0.6030 146 7 -12.49 -0.9720

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G056917 Ddi1 Mus musculus 71829

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Ddi1 mmu-miR-34c beg:11 end:30 pic:3' CGTTAGT-CGATTGATGTGACGGA 5'& .|||.| || ||||||| &5' -TAATTATGC------CACTGCC- 3' Ddi1 mmu-miR-449a beg:11 end:31 pic:3' TGGTCGATTGTTAT-GTGACGGT 5'& |||. ||. |||||||| &5' ------TAATTATGCCACTGCCA 3' Ddi1 mmu-miR-449c beg:16 end:30 pic:3' GGTCGATCGTTAC-GTGACGGA 5'& ||| ||||||| &5' ----------ATGCCACTGCC- 3' Ddi1 mmu-miR-449b beg:20 end:30 pic:3' CGGTCGATTGTTGTGACGGA 5'& ||||||| &5' ------------CACTGCC- 3' Ddi1 mmu-miR-129-5p beg:38 end:60 pic:3' CGTTCGG-GTCTGGCGTTTTTC 5'& ||||| |||.|. ||..|| &5' --AAGCCTCAGGCTTCAGGAA- 3' Ddi1 mmu-miR-135b beg:73 end:92 pic:3' AGTGTATCCTTACTTTTCGGTAT 5'& |||| || ||||.||| &5' TCACT--GGC----AAAGTCAT- 3' Ddi1 mmu-miR-145star beg:38 end:60 pic:3' GTTCTT-GTCATAAAGGTCCTTA 5'& ||| ||| |.|||||| &5' -AAGCCTCAGGC--TTCAGGAA- 3' Ddi1 mmu-miR-187 beg:53 end:74 pic:3' GGCCGACGTTGTGTTCTGTGCT 5'& || .|.||||||.|| &5' --GGAAAT--TATAAGACATGA 3' Ddi1 mmu-miR-2135 beg:40 end:55 pic:3' CAAAGCCGGGGTTCTGGAGA 5'& |||.| ||.|.|| &5' ------GCCTC-AGGCTTC- 3' Ddi1 mmu-miR-27bstar beg:57 end:78 pic:3' CAAGTGGTTAGTCG--ATTCGAGA 5'& |..| || |.||||| &5' ----ATTATA-AGACATGAGCTC- 3' Ddi1 mmu-miR-2861 beg:40 end:55 pic:3' GGCGGGCGGCGGTCCGGGG 5'& ||| .|||||..| &5' ------GCC-TCAGGCTTC 3' Ddi1 mmu-miR-34a beg:10 end:31 pic:3' TGTTGGT-CGATTCTGTGACGGT 5'& |.||..| || |||||||| &5' ATAATTATGC-----CACTGCCA 3' Ddi1 mmu-miR-34b-5p beg:10 end:30 pic:3' TGTTAGT-CGATTAATGTGACGGA 5'& |.|||.| || ||||||| &5' ATAATTATGC------CACTGCC- 3' Ddi1 mmu-miR-378star beg:40 end:59 pic:3' TGTGTCCTGGA--CCTCAGTCCTC 5'& .||| || |||||| &5' -------GCCTCAGGCTTCAGGA- 3' Ddi1 mmu-miR-411star beg:0 end:16 pic:3' CCAATCACCTGGCACAATGTAT 5'& ||| || ||||||| &5' -------GGAG-GTCTTACATA 3' Ddi1 mmu-miR-499 beg:0 end:12 pic:3' TTTGTAGTGACGTTCAGAATT 5'& | |.|||||| &5' ----------GGAGGTCTTA- 3' Ddi1 mmu-miR-672 beg:27 end:49 pic:3' AGTGTGTGTCA-TGTGGTTGGAGT 5'& |||| .| ||| |.||||| &5' -CACAA--GGAAACAA-AGCCTCA 3' Ddi1 mmu-miR-676 beg:39 end:59 pic:3' TC-GAGTTGTTGGAGTCCTGCC 5'& || ||||. .|.|||||| &5' AGCCTCAG--GCTTCAGGA--- 3' Ddi1 mmu-miR-691 beg:40 end:60 pic:3' AAAAGACGGAGA--GAAGTCCTTA 5'& ||||| ||||||||| &5' ------GCCTCAGGCTTCAGGAA- 3'

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Ddi1 RAID01155122 mmu-miR-7025-5p miRNA MIMAT0027954 Ddi1 mRNA 71829 Prediction 0.1828 Ddi1 RAID01478385 mmu-miR-449b miRNA MIMAT0005447 Ddi1 mRNA 71829 Prediction 0.1828 Ddi1 RAID01810411 mmu-miR-7220-5p miRNA MIMAT0028408 Ddi1 mRNA 71829 Prediction 0.1828 Ddi1 RAID02024257 mmu-miR-34c-5p miRNA MIMAT0000381 Ddi1 mRNA 71829 Prediction 0.1828 Ddi1 RAID02046877 mmu-miR-28a-5p miRNA MIMAT0000653 Ddi1 mRNA 71829 Prediction 0.1828 Ddi1 RAID02150783 mmu-miR-691 miRNA MIMAT0003470 Ddi1 mRNA 71829 Prediction 0.1828 Ddi1 RAID02194379 mmu-miR-34a-5p miRNA MIMAT0000542 Ddi1 mRNA 71829 Prediction 0.1828 Ddi1 RAID02200125 mmu-miR-34b-5p miRNA MIMAT0000382 Ddi1 mRNA 71829 Prediction 0.2202 Ddi1 RAID02434372 mmu-miR-449a-5p miRNA MIMAT0001542 Ddi1 mRNA 71829 Prediction 0.1828 Ddi1 RAID03664186 mmu-miR-449c-5p miRNA MIMAT0003460 Ddi1 mRNA 71829 Prediction 0.1828