DNA & RNA Element - AREsite Gene Name Motif CDS Area ARE Area Evidence Prpf4 ATTTA 93-1658 2677-2681;2741-2745;3907-3911;5127-5131 Prpf4 WWATTTAWW 93-1658 2675-2683;5125-5133 Prpf4 WWWATTTAWWW 93-1658 5124-5134 Prpf4 WWWWATTTAWWWW 93-1658 5123-5135

DNA & RNA Element - miRTarBase Target Gene (Entrez ID) miRTarBase ID miRNA Species (miRNA) Target Gene Species (Target Gene) Experiments Support Type References (PMID) MIRT589205 mmu-miR-290a-5p Mus musculus Prpf4 70052 Mus musculus HITS-CLIP Functional MTI (Weak) 25083871 MIRT589205 mmu-miR-290a-5p Mus musculus Prpf4 70052 Mus musculus HITS-CLIP Functional MTI (Weak) 21258322 MIRT589204 mmu-miR-292a-5p Mus musculus Prpf4 70052 Mus musculus HITS-CLIP Functional MTI (Weak) 25083871 MIRT589204 mmu-miR-292a-5p Mus musculus Prpf4 70052 Mus musculus HITS-CLIP Functional MTI (Weak) 21258322 MIRT601814 mmu-miR-139-5p Mus musculus Prpf4 70052 Mus musculus HITS-CLIP Functional MTI (Weak) 21258322 MIRT589206 mmu-miR-335-5p Mus musculus Prpf4 70052 Mus musculus HITS-CLIP Functional MTI (Weak) 25083871 MIRT589206 mmu-miR-335-5p Mus musculus Prpf4 70052 Mus musculus HITS-CLIP Functional MTI (Weak) 21258322 MIRT601815 mmu-miR-804 Mus musculus Prpf4 70052 Mus musculus HITS-CLIP Functional MTI (Weak) 21258322 MIRT601816 mmu-miR-1195 Mus musculus Prpf4 70052 Mus musculus HITS-CLIP Functional MTI (Weak) 21258322 MIRT601818 mmu-miR-3089-5p Mus musculus Prpf4 70052 Mus musculus HITS-CLIP Functional MTI (Weak) 21258322 MIRT601813 mmu-miR-5135 Mus musculus Prpf4 70052 Mus musculus HITS-CLIP Functional MTI (Weak) 21258322

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004526 mmu-miR-101a* 70052 Prpf4 cguAGUCGUGACACUAUUG-ACu |::|| || | ||||| || aacUUGGCUCUCU-AUAACAUGg 2 20 452 473 [mm9:4:62084897-62084918:+] 0.5421 121 0 -9.84 -0.1490 MIMAT0004529 mmu-miR-125b* 70052 Prpf4 uccAGGGUUCUUGGAC-UGAACa |::: || :|:|| ||||| guaUUUUUAGUGCUUGAACUUGg 2 20 436 458 [mm9:4:62084881-62084903:+] 0.5215 123 0 -12.07 -0.1086 MIMAT0000152 mmu-miR-140* 70052 Prpf4 ggcaCCAAGAUGG---GACACCAu | ||:| || ||||||| aaaaGAUUUUCCCUUUCUGUGGUg 2 18 798 821 [mm9:4:62085243-62085266:+] 0.5685 148 7 -16.14 -0.1102 MIMAT0000154 mmu-miR-142-5p 70052 Prpf4 ucaucacGAAAG---AUGAAAUAc ||||| |||||||| uguuccaCUUUCUGUUACUUUAUu 2 15 1299 1322 [mm9:4:62085744-62085767:+] 0.5088 153 7 -11.26 -0.1691 MIMAT0000240 mmu-miR-207 70052 Prpf4 cuccCUCCUCUCGGU-CCUCU-UCg || |||: | | ||||| || accuGAUGAGGUCAAUGGAGACAGg 2 20 3343 3367 [mm9:4:62087788-62087812:+] 0.5916 122 0 -17.78 -0.1165 MIMAT0004572 mmu-miR-290-3p 70052 Prpf4 cccgaauuuugauccGCCGUGAAa :||||||| ggccuucccuucacuUGGCACUUa 2 10 1948 1971 [mm9:4:62086393-62086416:+] 0.5153 141 7 -13.84 -0.2908 MIMAT0000370 mmu-miR-292-3p 70052 Prpf4 ugugaguuuuggaccGCCGUGAAa :||||||| ggccuucccuucacuUGGCACUUa 2 10 1948 1971 [mm9:4:62086393-62086416:+] 0.5153 141 7 -14.34 -0.2934 MIMAT0004574 mmu-miR-294* 70052 Prpf4 ucuaucccggagGUAAAACUCa ||||||||| uuuuuuauuuggCAUUUUGAGa 2 11 300 321 [mm9:4:62084745-62084766:+] 0.4722 150 7 -11.86 -0.2094 MIMAT0004574 mmu-miR-294* 70052 Prpf4 ucuaucccGGAGGUAAAACUCa |:|: :||||||| auccccuuCUUUAGUUUUGAGa 2 15 1253 1274 [mm9:4:62085698-62085719:+] 0.5757 150 7 -13.20 -0.3016 MIMAT0000375 mmu-miR-297a 70052 Prpf4 uguacGUGUACGUGUGUAUGUa ||||| ||:||||||| acacaCACAUACAUACAUACAc 2 18 1129 1150 [mm9:4:62085574-62085595:+] 0.4957 173 7 -21.08 -0.2470 MIMAT0004622 mmu-let-7c-1* 70052 Prpf4 ccUUUCGAUCUUCC---AACA-UGUc :||| ||| ||| |||| ||| agGAAG-UAGCAGGUUUUUGUGACAa 2 21 1355 1379 [mm9:4:62085800-62085824:+] 0.4997 121 0 -14.74 -0.1433 MIMAT0000549 mmu-miR-322* 70052 Prpf4 cacAACGUCGCGA-AGUACAAa |||: |: || ||||||| guaUUGU-GUUCUAUCAUGUUu 2 19 69 89 [mm9:4:62084514-62084534:+] 0.5995 151 7 -12.36 -0.2583 MIMAT0000558 mmu-miR-325* 70052 Prpf4 ugugaAUGACUCGUGGAUGAUCc || | | | ||||||| uucagUA-UAACAAACUACUAGu 2 19 3034 3055 [mm9:4:62087479-62087500:+] 0.5001 144 7 -9.79 -0.3653 MIMAT0000605 mmu-miR-350 70052 Prpf4 cuuucacauacccGAAACACUu :||||||| uucuauuucagcaUUUUGUGAa 2 10 1210 1231 [mm9:4:62085655-62085676:+] 0.5757 141 7 -9.71 -0.4969 MIMAT0004660 mmu-miR-19a* 70052 Prpf4 caUCACGUUGAUACGU-UUUGAu :|||: || | || ||||| ugGGUGUUACCAAACAUAAACUu 2 21 1092 1114 [mm9:4:62085537-62085559:+] 0.5030 124 0 -8.89 -0.3651 MIMAT0004666 mmu-miR-33* 70052 Prpf4 cacuacgugacaccUUUGUAAc ||||||| uaugguauauaacaAAACAUUu 2 9 1738 1759 [mm9:4:62086183-62086204:+] 0.5068 140 7 -6.82 -0.1142 MIMAT0000745 mmu-miR-380-3p 70052 Prpf4 uucuacaccUG-GUAUG-AUGUAu || ||||| ||||| aauacacacACACAUACAUACAUa 2 14 1124 1147 [mm9:4:62085569-62085592:+] 0.4957 120 0 -12.20 -0.3908 MIMAT0004758 mmu-miR-463 70052 Prpf4 gauggAAUAUACCAC-AGAUAGu ||:||| ||| |||||| aagaaUUGUAUUGUGUUCUAUCa 2 18 62 84 [mm9:4:62084507-62084529:+] 0.5995 137 6 -16.72 -0.3768 MIMAT0004759 mmu-miR-466a-5p 70052 Prpf4 auACAUGUACAUGUGUGUGUAu | || || |||||||||| uaUAUAAAUACACACACACAUa 2 21 1118 1139 [mm9:4:62085563-62085584:+] 0.4957 168 7 -16.86 -0.6282 MIMAT0002107 mmu-miR-466a-3p 70052 Prpf4 agaauaCACACGCACAUACAUAu |||| | | ||||||| uaaaggGUGUACCU-UAUGUAUu 2 18 1022 1043 [mm9:4:62085467-62085488:+] 0.5439 155 7 -10.03 -0.1710 MIMAT0003409 mmu-miR-467a 70052 Prpf4 gcguauauguacguCCGUGAAu ||||||| ccuucccuucacuuGGCACUUa 2 9 1950 1971 [mm9:4:62086395-62086416:+] 0.5153 140 7 -15.32 -0.2859 MIMAT0002109 mmu-miR-468 70052 Prpf4 gucUGUGUGCG-UGUAGUCAGUAu | |||:|: |: ||||||| gcuAAACAUGUGAUUCCAGUCAUa 2 21 1885 1908 [mm9:4:62086330-62086353:+] 0.5082 155 7 -18.82 -0.1375 MIMAT0002110 mmu-miR-469 70052 Prpf4 ccugugguuCUAGUUACUUUCUC-CGu |:|::|| ||||| || uuaauuuucGGUUGAUCCAAGAGAGCa 2 18 2108 2134 [mm9:4:62086553-62086579:+] 0.5164 121 0 -12.77 -0.1910 MIMAT0004822 mmu-miR-770-5p 70052 Prpf4 gcaccGGGUCUGUGCACCACGa ||:| : ||||||| uuaacCCUACCUCAGUGGUGCa 2 18 2251 2272 [mm9:4:62086696-62086717:+] 0.5122 145 7 -19.36 -0.2701 MIMAT0014816 mmu-miR-3099 70052 Prpf4 agGGGUUGGAGAGAGAU-CGGAu :|:||: | :|||| |||| gaUCUAAUGUAAUUCUAGGCCUg 2 21 1273 1295 [mm9:4:62085718-62085740:+] 0.5473 124 0 -19.24 -0.3592 MIMAT0003896 mmu-miR-763 70052 Prpf4 cggUGAC--CAAGAAGGGUCGACc |||| | :| |||||||| auaACUGCUGAAUUACCCAGCUGu 2 20 2323 2346 [mm9:4:62086768-62086791:+] 0.5006 154 7 -22.37 -0.1544 MIMAT0003477 mmu-miR-669a 70052 Prpf4 ugUACUUGUACGUGUGUGU-UGa || ||:| |||||||| || auAUAAAUACACACACACAUACa 2 21 1119 1141 [mm9:4:62085564-62085586:+] 0.4957 136 0 -14.69 -0.6065 MIMAT0003477 mmu-miR-669a 70052 Prpf4 uguacuUGUACGUGUGUGU-UGa |||| |||||||| || auacauACAUACACACACACACa 2 17 1137 1159 [mm9:4:62085582-62085604:+] 0.4957 136 0 -18.55 -0.3110 MIMAT0003477 mmu-miR-669a 70052 Prpf4 uguacuUGUACGUGUGUG-UUGa |||| || |||| ||| ucagucACAUCCAGACACUAACa 2 17 1469 1491 [mm9:4:62085914-62085936:+] 0.5004 128 0 -13.49 -0.1275 MIMAT0003898 mmu-miR-760 70052 Prpf4 aggggUGUCUGGGUCUCGGc |:: | |||||||| cgagaAUGAAACCAGAGCCa 2 16 746 765 [mm9:4:62085191-62085210:+] 0.5251 151 7 -17.24 -0.1865 MIMAT0003451 mmu-miR-677 70052 Prpf4 agUCUUCG--AUUAG--UAGUGACUu :|| || |:: | |||||||| guGGAUGCCAUGGACAAAUCACUGAc 2 21 2478 2503 [mm9:4:62086923-62086948:+] 0.4999 146 7 -11.54 -0.1328 MIMAT0003470 mmu-miR-691 70052 Prpf4 aaaAGACGGAGAGA-AG-UCCUUa ||| || || | || ||||| uucUCUACC-CUGUCUCGAGGAAa 2 20 632 654 [mm9:4:62085077-62085099:+] 0.4898 120 0 -15.63 -0.3931 MIMAT0003472 mmu-miR-693-5p 70052 Prpf4 cuuuUGAAAGCC---UACACCGAc |: ||| | |||||||| aaguAUAUUCCGUAUAUGUGGCUg 2 18 1912 1935 [mm9:4:62086357-62086380:+] 0.5153 148 7 -17.33 -0.1164 MIMAT0003476 mmu-miR-669b 70052 Prpf4 ugUACGUGUACGUGUGUUUUGa ||| ::|| :| ||||||| auAUG-GUAUAUA-ACAAAACa 2 21 1737 1756 [mm9:4:62086182-62086201:+] 0.5068 152 7 -11.20 -0.5649 MIMAT0003476 mmu-miR-669b 70052 Prpf4 uguacguGUACGUG-UGUUUUGa | | ||: ||||||| uugauauCCUUCAUGACAAAACa 2 16 915 937 [mm9:4:62085360-62085382:+] 0.6032 146 7 -10.22 -0.3529 MIMAT0005448 mmu-miR-467b 70052 Prpf4 guauauguacguCCGUGAAUg |||||||| uucccuucacuuGGCACUUAa 2 10 1952 1972 [mm9:4:62086397-62086417:+] 0.5153 145 7 -12.57 -0.1243 MIMAT0003480 mmu-miR-297b-5p 70052 Prpf4 uguacaaGUACGUGUGUAUGUa ||| ||:||||||| acacacaCAUACAUACAUACAc 2 16 1129 1150 [mm9:4:62085574-62085595:+] 0.4957 163 7 -17.10 -0.2536 MIMAT0004827 mmu-miR-297b-3p 70052 Prpf4 auaCCCAUACACACAUACAUAu ||||:| | ||||||| aaaGGGUGUACCU-UAUGUAUu 2 20 1023 1043 [mm9:4:62085468-62085488:+] 0.5439 153 7 -14.71 -0.1743 MIMAT0003742 mmu-miR-455 70052 Prpf4 cacauauacgggcACCUGACg ||||||| aaaaaaagauagcUGGACUGu 2 9 660 680 [mm9:4:62085105-62085125:+] 0.4875 140 7 -12.96 -0.1789 MIMAT0003502 mmu-miR-712 70052 Prpf4 ccauggcgggcccACUUCCUc ||||||| guaaguuguauucUGAAGGAa 2 9 3084 3104 [mm9:4:62087529-62087549:+] 0.5100 140 7 -10.88 -0.1110 MIMAT0003504 mmu-miR-713 70052 Prpf4 cgaCACACGGAAGUCACGu || |: ||||||| gagGUUCACUAUCAGUGCa 2 17 3321 3339 [mm9:4:62087766-62087784:+] 0.5916 144 7 -14.99 -0.5790 MIMAT0003508 mmu-miR-501-5p 70052 Prpf4 aaagugggucccugUUUCCUAa ||||||| auaaaaacucuuugAAAGGAUu 2 9 1185 1206 [mm9:4:62085630-62085651:+] 0.5799 140 7 -11.27 -0.3382 MIMAT0003781 mmu-miR-676* 70052 Prpf4 cgUUCAGGAUUCCAACAUCUCa ||| | || ||||||| guAAG-CAAAAAUGUGUAGAGa 2 21 3279 3299 [mm9:4:62087724-62087744:+] 0.5916 146 7 -13.61 -0.3363 MIMAT0004237 mmu-miR-742 70052 Prpf4 aaauGGGUCGUACCACCGAAAg |:| | | ||||||| gagcCUCUUCCUUUUGGCUUUg 2 19 889 910 [mm9:4:62085334-62085355:+] 0.5858 146 7 -10.18 -0.1852 MIMAT0004842 mmu-miR-879 70052 Prpf4 ccgAAUCUCGAUAUUCGG-AGa ||: || |:|||||| || aagUUGUAGGUGUAAGCCAUCa 2 19 1450 1471 [mm9:4:62085895-62085916:+] 0.5004 130 0 -15.62 -0.2310 MIMAT0004842 mmu-miR-879 70052 Prpf4 ccgaauCUCGAUAU-UCGGAGa | |:|:|| |||||| augucuGUGUUGUACAGCCUCc 2 16 985 1006 [mm9:4:62085430-62085451:+] 0.5723 123 6 -16.01 -0.1969 MIMAT0004857 mmu-miR-147 70052 Prpf4 auCGUCUUCGUAAAGGCGUGUg ||| :|:| |||||||| cuGCA-CGGUAAAUCCGCACAg 2 21 1606 1626 [mm9:4:62086051-62086071:+] 0.4990 154 7 -18.21 -0.1338 MIMAT0004863 mmu-miR-220 70052 Prpf4 uucacaGACUGUGACACCACc | |::|:||||||| cucuaaCAGGUAUUGUGGUGa 2 16 2908 2928 [mm9:4:62087353-62087373:+] 0.5009 155 7 -18.38 -0.2446 MIMAT0004863 mmu-miR-220 70052 Prpf4 uucACAGACUGUGACACCACc |||:| |:||||||| agaUGUUU---AUUGUGGUGu 2 19 1324 1341 [mm9:4:62085769-62085786:+] 0.4987 150 7 -16.30 -0.4421 MIMAT0004864 mmu-miR-297a* 70052 Prpf4 auaCCCAUACACACAUACAUAu ||||:| | ||||||| aaaGGGUGUACCU-UAUGUAUu 2 20 1023 1043 [mm9:4:62085468-62085488:+] 0.5439 153 7 -14.71 -0.1743 MIMAT0004865 mmu-miR-297c 70052 Prpf4 uguacAUGUACGUGUGUAUGUa |||| |||||||||| auaaaUACACACACACAUACAu 2 18 1121 1142 [mm9:4:62085566-62085587:+] 0.4957 169 7 -19.72 -0.1968 MIMAT0004866 mmu-miR-297c* 70052 Prpf4 auaCCCAUACACACAUACAUAu ||||:| | ||||||| aaaGGGUGUACCU-UAUGUAUu 2 20 1023 1043 [mm9:4:62085468-62085488:+] 0.5439 153 7 -14.71 -0.1743 MIMAT0004875 mmu-miR-466b-5p 70052 Prpf4 guACAUGUACAUGUGUGUGUAg | || || |||||||||| uaUAUAAAUACACACACACAUa 2 21 1118 1139 [mm9:4:62085563-62085584:+] 0.4957 168 7 -16.81 -0.6282 MIMAT0004876 mmu-miR-466b-3p 70052 Prpf4 agaauaCACACGCACAUACAUAu |||| | | ||||||| uaaaggGUGUACCU-UAUGUAUu 2 18 1022 1043 [mm9:4:62085467-62085488:+] 0.5439 155 7 -10.03 -0.1710 MIMAT0005453 mmu-miR-466b-3-3p 70052 Prpf4 agaauaCACACGCACAUACAUAa |||| | | ||||||| uaaaggGUGUACCU-UAUGUAUu 2 18 1022 1043 [mm9:4:62085467-62085488:+] 0.5439 155 7 -10.76 -0.1710 MIMAT0004877 mmu-miR-466c-5p 70052 Prpf4 auACAUGUACGUGUGUGUGUAg | || || ||||||||||| uaUAUAAAUACACACACACAUa 2 21 1118 1139 [mm9:4:62085563-62085584:+] 0.4957 176 7 -19.59 -0.6245 MIMAT0004878 mmu-miR-466c-3p 70052 Prpf4 agaauaCACACGCACAUACAUAu |||| | | ||||||| uaaaggGUGUACCU-UAUGUAUu 2 18 1022 1043 [mm9:4:62085467-62085488:+] 0.5439 155 7 -10.03 -0.1710 MIMAT0004879 mmu-miR-466e-5p 70052 Prpf4 auACAUGUACAUGUGUGUGUAg | || || |||||||||| uaUAUAAAUACACACACACAUa 2 21 1118 1139 [mm9:4:62085563-62085584:+] 0.4957 168 7 -16.74 -0.6282 MIMAT0004880 mmu-miR-466e-3p 70052 Prpf4 agaauaCACACGCACAUACAUAu |||| | | ||||||| uaaaggGUGUACCU-UAUGUAUu 2 18 1022 1043 [mm9:4:62085467-62085488:+] 0.5439 155 7 -10.03 -0.1710 MIMAT0004882 mmu-miR-466f-3p 70052 Prpf4 cacacauacaCACACACAUAc || ||||||| uucagagaagGU-UGUGUAUa 2 12 1636 1655 [mm9:4:62086081-62086100:+] 0.4990 141 7 -7.53 -0.1964 MIMAT0004893 mmu-miR-574-5p 70052 Prpf4 uguguGAGUGUGUGUGUGUGAGu ||| | | | ||||||| ccugcCUC-CUCCCUCACACUCa 2 19 250 271 [mm9:4:62084695-62084716:+] 0.5341 152 7 -18.25 -0.1586 MIMAT0004930 mmu-miR-466d-5p 70052 Prpf4 guacAUGUACAUGCGUGUGUGu ||||| || ||||||| uacaUACAUACACACACACACa 2 19 1138 1159 [mm9:4:62085583-62085604:+] 0.4957 166 7 -20.19 -0.4321 MIMAT0004930 mmu-miR-466d-5p 70052 Prpf4 guACAUGUACAUGCGUGUGUGu | ||:| ||| ||||||| uaUAUAUAAAUACACACACACa 2 21 1116 1137 [mm9:4:62085561-62085582:+] 0.4957 164 7 -17.82 -0.8091 MIMAT0004931 mmu-miR-466d-3p 70052 Prpf4 gauaCACACGCACAUACAUAu |||| | | ||||||| aaggGUGUACCU-UAUGUAUu 2 18 1024 1043 [mm9:4:62085469-62085488:+] 0.5439 155 7 -10.03 -0.1710 MIMAT0005832 mmu-miR-669g 70052 Prpf4 uagUACAGUUGUGUAUG-UUACGu | ||:|: || || ||||| ccaAGGUUAGAACUAACAAAUGCu 2 21 2940 2963 [mm9:4:62087385-62087408:+] 0.5031 124 0 -10.60 -0.1803 MIMAT0005837 mmu-miR-1187 70052 Prpf4 aaUGUGUGUAUGUGUGUGUGUAu |:|:| |||||||||||||| auAUAUAAAUACACACACACAUa 2 22 1117 1139 [mm9:4:62085562-62085584:+] 0.4957 189 7 -29.52 -0.6171 MIMAT0005845 mmu-miR-466k 70052 Prpf4 agUGUACAUGUACAUGUGUGUGu |:|| || || |||||||| uuAUAUAUAAAUACACACACACa 2 22 1115 1137 [mm9:4:62085560-62085582:+] 0.4993 169 7 -17.70 -0.8094 MIMAT0005845 mmu-miR-466k 70052 Prpf4 agUGUACAUGUACAUGUGUGUGu |||| |:| ||||||||| acACAUACAUACAUACACACACa 2 22 1133 1155 [mm9:4:62085578-62085600:+] 0.4957 169 7 -24.34 -0.6273 MIMAT0005846 mmu-miR-467f 70052 Prpf4 acauccacaCACACACAUAUa || |||||||| ucagagaagGU-UGUGUAUAg 2 13 1637 1656 [mm9:4:62086082-62086101:+] 0.4990 146 7 -12.12 -0.1383 MIMAT0005851 mmu-miR-1193 70052 Prpf4 cuAUCAUUUUGCCCAC-UGGAu || | ||| ||||| |||| guUAUUUAAA-GGGUGUACCUu 2 20 1016 1036 [mm9:4:62085461-62085481:+] 0.5723 129 0 -15.01 -0.1883 MIMAT0005854 mmu-miR-467g 70052 Prpf4 uauaUACACACA---CAUACAUAu | | |||| ||||||| uuuaAAGGGUGUACCUUAUGUAUu 2 18 1020 1043 [mm9:4:62085465-62085488:+] 0.5439 144 7 -10.02 -0.1858 MIMAT0007868 mmu-miR-1903 70052 Prpf4 acagagUCCUUCUUCUUCUUCc |||||| ||||||| aaaaaaAGGAAG--GAAGAAGa 2 17 3002 3021 [mm9:4:62087447-62087466:+] 0.4999 157 7 -17.29 -0.3630 MIMAT0007873 mmu-miR-1896 70052 Prpf4 gaggaGUGGGUGGUAGUCUCUc || : |:: ||||||| cagagCAGUAAUU-UCAGAGAa 2 18 1624 1644 [mm9:4:62086069-62086089:+] 0.4990 143 7 -11.49 -0.2708 MIMAT0009399 mmu-miR-1935 70052 Prpf4 ucucuaggcggucGGAGACGGa :||||||| uuuuuccauuucuUCUCUGCCc 2 10 3199 3220 [mm9:4:62087644-62087665:+] 0.5446 141 7 -17.73 -0.1683 MIMAT0009402 mmu-miR-1938 70052 Prpf4 cuggcuugaUGUUCAG-GGUGGc ||| ||| ||||| guuaugaggACAUGUCACCACCa 2 14 697 719 [mm9:4:62085142-62085164:+] 0.4852 121 0 -19.99 -0.1554 MIMAT0009404 mmu-miR-1940 70052 Prpf4 uugACGAGGUGGAAGAGUCAGGA-GGUa ||:||:|:| | |: |||| ||| uugUGUUCUAUCAUGUU--UCCUGCCAa 2 25 72 97 [mm9:4:62084517-62084542:+] 0.5995 129 0 -18.53 -0.8094 MIMAT0009405 mmu-miR-1941-5p 70052 Prpf4 uucggaGACAUGGUC-GUAGAGGGa |||||:: | ||||||| gcuggaCUGUAUUUGAAAUCUCCCc 2 19 671 695 [mm9:4:62085116-62085140:+] 0.4852 157 7 -22.01 -0.1138 MIMAT0009408 mmu-miR-1943 70052 Prpf4 agGUCCACGGGUCUAGGA--GGGAa :| | ||: ||||||| |||| agUAAGAGCUAAGAUCCUAACCCUc 2 22 2965 2989 [mm9:4:62087410-62087434:+] 0.5015 121 0 -20.31 -0.1401 MIMAT0009416 mmu-miR-1949 70052 Prpf4 uugaUACGACUGUA-GGACCAUAUc || ||| || : ||||||| guagAUCAUGA-AUAUAUGGUAUAu 2 21 1724 1747 [mm9:4:62086169-62086192:+] 0.5068 149 7 -11.02 -0.3974 MIMAT0009418 mmu-miR-669l 70052 Prpf4 ugUAUAUGUACGUGUGUGU-UGa | |||||| |||||||| || auACAUACAUACACACACACACa 2 21 1137 1159 [mm9:4:62085582-62085604:+] 0.4957 148 0 -19.28 -0.3084 MIMAT0009418 mmu-miR-669l 70052 Prpf4 uguauaUGUACGUGUGUG-UUGa |||| || |||| ||| ucagucACAUCCAGACACUAACa 2 17 1469 1491 [mm9:4:62085914-62085936:+] 0.5004 128 0 -13.50 -0.1275 MIMAT0009435 mmu-miR-1962 70052 Prpf4 uacACAGG-GUCACG-GUCGGAGa ||||: :: ||: ||||||| ugaUGUCUGUGUUGUACAGCCUCc 2 20 983 1006 [mm9:4:62085428-62085451:+] 0.5723 153 7 -20.62 -0.1744 MIMAT0009443 mmu-miR-1946b 70052 Prpf4 uuUUCGUACACGGUGGUGAC-GGGCCg |||:|| | || : |||| ||||| guAAGUAUAU-CCCUGACUGUCCCGGa 2 25 330 355 [mm9:4:62084775-62084800:+] 0.4846 138 0 -25.11 -0.1099 MIMAT0009460 mmu-miR-1982.1 70052 Prpf4 gaCAC-CCUCUUGUAU---CCCACUCu ||| | ||::|| ||||||| aaGUGCUGCCAAUGUAAGUGGGUGAGa 2 22 2633 2659 [mm9:4:62087078-62087104:+] 0.4992 147 7 -18.73 -0.1969 MIMAT0011217 mmu-miR-2141 70052 Prpf4 uuGAAAAGAC-UGU-GGAGGa || | :|| ||| ||||| guCUGUGUUGUACAGCCUCCu 2 18 987 1007 [mm9:4:62085432-62085452:+] 0.5723 120 0 -17.98 -0.1283 MIMAT0011286 mmu-miR-2182 70052 Prpf4 gcgccgcacccuuuACACCGCa ||||||| augucaccaccauuUGUGGCGa 2 9 708 729 [mm9:4:62085153-62085174:+] 0.5052 140 7 -12.53 -0.1771 MIMAT0000124 mmu-miR-15b 70052 Prpf4 acauuUGGUACUACACG-ACGAu :||| || |||| |||| auguuGCCA-GACGUGCUUGCUa 2 18 3252 3273 [mm9:4:62087697-62087718:+] 0.5644 123 0 -20.20 -0.1763 MIMAT0000125 mmu-miR-23b 70052 Prpf4 ccaUUAGGGA-CCGUUACACUa |:|: | || ||||||| ugaAGUUGAUAGGAAAUGUGAg 2 19 3302 3323 [mm9:4:62087747-62087768:+] 0.5916 149 7 -11.74 -0.1199 MIMAT0000126 mmu-miR-27b 70052 Prpf4 cguCUUGAA-UCGGUGAC-ACUu |:|||| | : |||| ||| gguGGACUUGAAUAACUGCUGAa 2 19 2312 2334 [mm9:4:62086757-62086779:+] 0.5006 121 0 -16.39 -0.2913 MIMAT0000146 mmu-miR-134 70052 Prpf4 ggggagaccaGUUGGUCAGUGu | |:||||||| uagguguaagCCAUCAGUCACa 2 13 1456 1477 [mm9:4:62085901-62085922:+] 0.5004 148 7 -18.64 -0.2961 MIMAT0000148 mmu-miR-136 70052 Prpf4 gguAGUAGUUUUGUUUACCUCa | || :|::: ||||||| accUGAU-GAGGUCAAUGGAGa 2 20 3343 3363 [mm9:4:62087788-62087808:+] 0.5916 149 7 -15.60 -0.2338 MIMAT0000149 mmu-miR-137 70052 Prpf4 gaugcgcAUAAGAA--UUCG-UUAUu ||||||| :||| |||| guggaaaUAUUCUUUAGAGCAAAUAa 2 17 3536 3561 [mm9:4:62087981-62088006:+] 0.5361 127 0 -10.95 -0.5260 MIMAT0000150 mmu-miR-138 70052 Prpf4 gcCGGACUAAGUGUUGU-GGUCGa |: || |||| ||| ||||| aaGUAUG-CUCACCACACCCAGCu 2 22 1865 1887 [mm9:4:62086310-62086332:+] 0.5010 127 0 -18.19 -0.1480 MIMAT0000153 mmu-miR-141 70052 Prpf4 gguAGAAAUG--GUCUGUCACAAu |||| || | |||||||| uuuUCUUGACAUCUUACAGUGUUu 2 20 2003 2026 [mm9:4:62086448-62086471:+] 0.5164 158 7 -16.61 -0.2991 MIMAT0000157 mmu-miR-145 70052 Prpf4 ucccuAAGGACCCUU---UUGACCUg ||| || || ||||||| aacacUUCAUGUCAAAGGAACUGGAa 2 19 1048 1073 [mm9:4:62085493-62085518:+] 0.5155 149 7 -13.40 -0.3021 MIMAT0000209 mmu-miR-129-5p 70052 Prpf4 cguucgggucuggCGUUUUUc ||||||| gcuacaaagguaaGCAAAAAu 2 9 3270 3290 [mm9:4:62087715-62087735:+] 0.5916 140 7 -9.80 -0.2843 MIMAT0000211 mmu-miR-182 70052 Prpf4 gccACACUCAAGAUGGU-AAC-GGUUu ||||| : |||| ||| |||| uuuUGUGAACCUAACCAUUUGUCCAAa 2 23 1223 1249 [mm9:4:62085668-62085694:+] 0.5757 129 0 -18.06 -0.3865 MIMAT0000215 mmu-miR-186 70052 Prpf4 ucggguuuuCCUCU-UAAGAAAc ||| | ||||||| uacuucuguGGAAAUAUUCUUUa 2 14 3529 3551 [mm9:4:62087974-62087996:+] 0.5361 148 7 -8.93 -0.6274 MIMAT0000224 mmu-miR-194 70052 Prpf4 agguguaccUCAACGACAAUGu | || ||||||| aauuguuccACUUUCUGUUACu 2 14 1296 1317 [mm9:4:62085741-62085762:+] 0.5190 149 7 -12.81 -0.4280 MIMAT0000247 mmu-miR-143 70052 Prpf4 cucgaUGUCACGA-AGUAGAGu ||| :| ||||||| uuagaACAAAAUUCUCAUCUCa 2 17 178 199 [mm9:4:62084623-62084644:+] 0.5619 143 7 -12.64 -0.2710 MIMAT0000366 mmu-miR-290-5p 70052 Prpf4 uuucacGGGGGUAUC-AAACUCa |::|: ||| |||||| gaucccCUUCUUUAGUUUUGAGa 2 17 1252 1274 [mm9:4:62085697-62085719:+] 0.5757 124 6 -18.00 -0.3077 MIMAT0000369 mmu-miR-292-5p 70052 Prpf4 guUUUCUCGGGG-----GUC-AAACUCa |:||| |||| :|| |||||| aaAGAGAUCCCCUUCUUUAGUUUUGAGa 2 21 1247 1274 [mm9:4:62085692-62085719:+] 0.5757 123 6 -21.36 -0.3129 MIMAT0000519 mmu-miR-200a 70052 Prpf4 uguAGCAAUGGUCUGUCACAAu |:| |:| |||||||| uucUUGACAUCUUACAGUGUUu 2 20 2005 2026 [mm9:4:62086450-62086471:+] 0.5164 155 7 -15.22 -0.2991 MIMAT0000532 mmu-miR-23a 70052 Prpf4 ccUUUAGGGA-CCGUUACACUa ||:|: | || ||||||| ugAAGUUGAUAGGAAAUGUGAg 2 20 3302 3323 [mm9:4:62087747-62087768:+] 0.5916 154 7 -14.39 -0.1199 MIMAT0000537 mmu-miR-27a 70052 Prpf4 cgcCUUGAA-UCGGUGAC-ACUu |:|||| | : |||| ||| gguGGACUUGAAUAACUGCUGAa 2 19 2312 2334 [mm9:4:62086757-62086779:+] 0.5006 121 0 -19.22 -0.2913 MIMAT0000539 mmu-miR-92a 70052 Prpf4 guccggcccUGUUCACGUUAu |: |||||||| agguucacuAUCAGUGCAAUu 2 13 3322 3342 [mm9:4:62087767-62087787:+] 0.5916 148 7 -13.37 -0.1949 MIMAT0000582 mmu-miR-338-3p 70052 Prpf4 guUGUUUUAGUGACUA-CGACCu | :||| | ||| ||||| aaAAGAAAAAAAAGAUAGCUGGa 2 21 654 676 [mm9:4:62085099-62085121:+] 0.4875 120 0 -13.24 -0.3308 MIMAT0000652 mmu-miR-25 70052 Prpf4 agUCUGGCU-CUGUUCACGUUAc ||::: | |: |||||||| ugAGGUUCACUAUCAGUGCAAUu 2 21 3320 3342 [mm9:4:62087765-62087787:+] 0.5916 151 7 -12.82 -0.1931 MIMAT0000654 mmu-miR-32 70052 Prpf4 acgUUGAAUCAU-UACACGUUAu :::| | || ||||||| ugaGGUUCACUAUCAGUGCAAUu 2 20 3320 3342 [mm9:4:62087765-62087787:+] 0.5916 142 7 -9.16 -0.1913 MIMAT0000656 mmu-miR-139-5p 70052 Prpf4 gaccucugugcacgUGACAUCu ||||||| agguucugccaaaaACUGUAGa 2 9 199 220 [mm9:4:62084644-62084665:+] 0.5619 140 7 -14.49 -0.5753 MIMAT0000665 mmu-miR-223 70052 Prpf4 accccauaaacugUUUGACUGu |||||||| uuuagagcaaauaAAACUGACu 2 10 3548 3569 [mm9:4:62087993-62088014:+] 0.5639 145 7 -9.85 -0.6632 MIMAT0004684 mmu-miR-362-3p 70052 Prpf4 acUUAGGAACUUGUCC-ACACAa |||:: ||: ||| ||||| guAAUUUCAGAGAAGGUUGUGUa 2 21 1631 1653 [mm9:4:62086076-62086098:+] 0.4990 128 0 -12.72 -0.2233 MIMAT0000708 mmu-miR-363 70052 Prpf4 augUCUACCU-AUGG-CACGUUAa ||:| | ||:| ||||||| gugAGGUUCACUAUCAGUGCAAUu 2 20 3319 3342 [mm9:4:62087764-62087787:+] 0.5916 153 7 -15.19 -0.1949 MIMAT0000747 mmu-miR-382 70052 Prpf4 gcuUAGGUG-GUGCUUGU-UGAAg || ||| ||| ||| |||| uacAUACACACACACACACACUUg 2 20 1142 1165 [mm9:4:62085587-62085610:+] 0.4957 126 0 -11.82 -0.1486 MIMAT0001076 mmu-miR-384-3p 70052 Prpf4 uaACACUUGUUAAAGAUCCUUa | ||||| || ||||||| ggUCUGAAC-CUUACUAGGAAc 2 21 2087 2107 [mm9:4:62086532-62086552:+] 0.5164 162 7 -12.89 -0.1419 MIMAT0001092 mmu-miR-376b 70052 Prpf4 uucaccuacaAGGAGAUACUa | :||||||| acccuuaaccUGUUCUAUGAa 2 12 1975 1995 [mm9:4:62086420-62086440:+] 0.5158 143 7 -8.95 -0.5181 MIMAT0001420 mmu-miR-433 70052 Prpf4 uguggcuccucgggUAGUACUa ||||||| cugcucuucuguagAUCAUGAa 2 9 1714 1735 [mm9:4:62086159-62086180:+] 0.5068 140 7 -8.92 -0.2047 MIMAT0003128 mmu-miR-485 70052 Prpf4 cuUAAGUAGUGCCGGUCGGAGa :| ::| :| ||||||| auGUCUGUGUUGUACAGCCUCc 2 21 985 1006 [mm9:4:62085430-62085451:+] 0.5723 144 7 -14.67 -0.1727 MIMAT0003181 mmu-miR-367 70052 Prpf4 agugguaacGAU-UUCACGUUAa ||| |||||||| ugagguucaCUAUCAGUGCAAUu 2 14 3320 3342 [mm9:4:62087765-62087787:+] 0.5916 148 7 -15.90 -0.1913 MIMAT0003182 mmu-miR-494 70052 Prpf4 cucCAAAGGGCACAUACAAAGu || |:|: | ||||||| auuGUGUUCUAU-CAUGUUUCc 2 20 71 91 [mm9:4:62084516-62084536:+] 0.5995 149 7 -11.19 -0.1017 MIMAT0004828 mmu-miR-708 70052 Prpf4 gggucGAUCUAACAU-UC-GAGGAa ||: :||||| || ||||| gauguCUGUGUUGUACAGCCUCCUu 2 19 984 1008 [mm9:4:62085429-62085453:+] 0.5723 129 0 -17.72 -0.1567 MIMAT0004899 mmu-miR-92b 70052 Prpf4 ccUCC-GGCCCUGCUCACGUUAu ||| :| |: |||||||| ugAGGUUCACUAUCAGUGCAAUu 2 21 3320 3342 [mm9:4:62087765-62087787:+] 0.5916 151 7 -16.82 -0.1949

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G037351 Prpf4 Mus musculus 70052

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Prpf4 mmu-miR-692 beg:1240 end:1255 pic:3' CTCACTCCGCGAGTTTCTCTA 5'& | ||||||||| &5' ---------GTCCAAAGAGAT 3' Prpf4 mmu-miR-501-5p beg:1188 end:1207 pic:3' AAAGTGGGTCCCTGTTTCCTAA 5'& ||.| |||||||| &5' ----ACTCTTTG--AAAGGATT 3' Prpf4 mmu-miR-211 beg:3095 end:3110 pic:3' TCCGTTTCCTACTGTTTCCCTT 5'& .||||| |||||| &5' ----GAAGGA-----AAGGGA- 3' Prpf4 mmu-miR-204 beg:3097 end:3110 pic:3' TCCGTATCCTACTGTTTCCCTT 5'& |||| |||||| &5' ------AGGA-----AAGGGA- 3' Prpf4 mmu-miR-223 beg:3558 end:3569 pic:3' ACCCCATAAACTGTTTGACTGT 5'& |||||||| &5' -------------AAACTGAC- 3' Prpf4 mmu-miR-218 beg:2611 end:2625 pic:3' TGTACCAATCTAG-TTCGTGTT 5'& ||| ||||||| &5' ----------ATCTAAGCACA- 3' Prpf4 mmu-miR-135a beg:1452 end:1470 pic:3' AGTGTATCCTTATTTTTCGGTAT 5'& .|||| ||||||| &5' ----GTAGGTGT---AAGCCAT- 3' Prpf4 mmu-miR-135b beg:1452 end:1470 pic:3' AGTGTATCCTTACTTTTCGGTAT 5'& .|||| || ||||||| &5' ----GTAGG--TGT-AAGCCAT- 3' Prpf4 mmu-miR-23a beg:3310 end:3323 pic:3' CCTTTAGGGACCGTTACACTA 5'& || ||||||| &5' ----------GGAAATGTGA- 3' Prpf4 mmu-miR-669b beg:1739 end:1756 pic:3' TGTACGTGTACGTGTGTTTTGA 5'& |.|.|| ||||||| &5' ----GTATATA---ACAAAAC- 3' Prpf4 mmu-miR-2136 beg:1869 end:1886 pic:3' GTGTAGAGTCAGTTGTGGGTC 5'& |||| | |||||||| &5' -----CTCA--CCACACCCAG 3' Prpf4 mmu-miR-2136 beg:2611 end:2630 pic:3' GTGTAGAGTCAGTTGTGGGTC 5'& |||| || | |||||||| &5' ---ATCTAAG-C-ACACCCAG 3' Prpf4 mmu-miR-297c beg:1123 end:1143 pic:3' TGTACATGTACGTGTGTATGTA 5'& |||| ||||||||||| &5' -----TACACACACACATACAT 3' Prpf4 mmu-miR-297b-5p beg:1125 end:1143 pic:3' TGTACAAGTACGTGTGTATGTA 5'& || ||||||||||| &5' -------CACACACACATACAT 3' Prpf4 mmu-miR-297a beg:1126 end:1150 pic:3' TGTACGTGTACGTGTGTATGTA 5'& ||| ||||| ||.||||||| &5' ACACACACATACATACATACA- 3' Prpf4 mmu-miR-297c beg:1132 end:1150 pic:3' TGTACATGTACGTGTGTATGTA 5'& |||| ||.||||||| &5' ------ACATACATACATACA- 3' Prpf4 mmu-miR-297b-5p beg:1133 end:1150 pic:3' TGTACAAGTACGTGTGTATGTA 5'& ||| ||.||||||| &5' -------CATACATACATACA- 3' Prpf4 mmu-miR-17star beg:759 end:776 pic:3' GATGTTCACGGGAG-TGACGTCA 5'& ||| ||||||| &5' --------GCCATAGACTGCAG- 3' Prpf4 mmu-miR-20bstar beg:759 end:776 pic:3' GATCTTCACGAGTG--TGACGTCA 5'& || ||. ||||||| &5' --------GC-CATAGACTGCAG- 3' Prpf4 mmu-miR-139-5p beg:1796 end:1814 pic:3' GACCTCTGTGCACGTGACATCT 5'& ||| || ||||||||| &5' ----AGA-ACT--CACTGTAGA 3' Prpf4 mmu-miR-139-5p beg:202 end:221 pic:3' GACCTCTGTGCACG-----TGACATCT 5'& ||| |||||||| &5' -----------TGCCAAAAACTGTAGA 3' Prpf4 mmu-miR-28 beg:723 end:737 pic:3' GAGTTATCTGACACTCGAGGAA 5'& | ||||||||| &5' -----------GCGAGCTCCTT 3' Prpf4 mmu-miR-101astar beg:2312 end:2329 pic:3' CGTAGTCGTGACAC-TATTGACT 5'& | ||| || ||||||| &5' ------GGACT-TGAATAACTG- 3' Prpf4 mmu-miR-872star beg:1544 end:1561 pic:3' TCCTCCGATGACGTTATCAAGT 5'& .||.| | ||||||| &5' ---GGGTT----CCATAGTTC- 3' Prpf4 mmu-miR-1941-5p beg:676 end:695 pic:3' TTCGGAGACATGGTCG-TAGAGGGA 5'& |||||.. ||||||| &5' ------CTGTATTTGAAATCTCCC- 3' Prpf4 mmu-miR-295star beg:2068 end:2082 pic:3' CTTCACACGGGGTGTAAACTCA 5'& ||||||||||| &5' -----------CACATTTGAGT 3' Prpf4 mmu-miR-466k beg:1113 end:1136 pic:3' AGTGTACATGTACATGTGTGTGT 5'& .|| ||.| |||||||||| &5' ---TATATATAAATACACACACA 3' Prpf4 mmu-miR-669d beg:1114 end:1136 pic:3' TGTATATGTACGTGTGTGTTCA 5'& |.||||| || |||||||| &5' ATATATAAATACACACACA--- 3' Prpf4 mmu-miR-466d-5p beg:1117 end:1138 pic:3' GTACATGTACATGCGTGTGTGT 5'& ||.| ||| |||||||| &5' ----TATAAATACACACACACA 3' Prpf4 mmu-miR-669n beg:1122 end:1142 pic:3' TGTGTGTAGGTGTGTGTTTA 5'& |.||||| ||||.||| &5' ATACACACACACATACA--- 3' Prpf4 mmu-miR-669c beg:1122 end:1145 pic:3' TGTGTGTAGGTGTGTGT-TGATA 5'& |.||||| ||||.||| || &5' ATACACACACACATACATAC--- 3' Prpf4 mmu-miR-466h beg:1123 end:1146 pic:3' ATGTGTGTTCGTGTACGTGTGT 5'& |||||||| ||||| ||.||| &5' TACACACA--CACATACATACA 3' Prpf4 mmu-miR-466j beg:1123 end:1146 pic:3' AATGTGTGTACGTGTACGTGTGT 5'& |||||||| ||||| ||.||| &5' -TACACACA--CACATACATACA 3' Prpf4 mmu-miR-574-5p beg:1124 end:1150 pic:3' TGTGTGAGTGTGTGTGTGTGAGT 5'& |||||| ||||.|||.|||. || &5' ACACACACACATACATACATACA 3' Prpf4 mmu-miR-1187 beg:1128 end:1150 pic:3' AATGTGTGTATGTGTGTGTGTAT 5'& |||||||||||.|||.||| &5' --ACACACATACATACATACA-- 3' Prpf4 mmu-miR-466k beg:1129 end:1156 pic:3' AGTGTACATGTAC--ATGTGTGTGT 5'& |||| ||||| |||||||||| &5' -CACACATACATACATACACACACA 3' Prpf4 mmu-miR-669d beg:1132 end:1156 pic:3' TGTAT--ATGTACGTGTGTGTTCA 5'& ||||| ||||| |||||||| &5' ACATACATACATACACACACA--- 3' Prpf4 mmu-miR-1187 beg:1135 end:1158 pic:3' AATGTGTGTATGTGTGTGTGTAT 5'& ||||.||||||||||||||| &5' -TACATACATACACACACACA-- 3' Prpf4 mmu-miR-466d-5p beg:1135 end:1158 pic:3' GTACATGTAC--ATGCGTGTGTGT 5'& ||||| ||| |||||||| &5' ----TACATACATACACACACACA 3' Prpf4 mmu-miR-466h beg:1135 end:1160 pic:3' ATGTGTGTTCGTGTACGTGTGT 5'& ||||.||| |||| |||||| &5' TACATACATACACACACACACA 3' Prpf4 mmu-miR-466j beg:1135 end:1160 pic:3' AATGTGTGTACGTGTACGTGTGT 5'& ||||.|||| |||| |||||| &5' -TACATACATACACACACACACA 3' Prpf4 mmu-miR-574-5p beg:1140 end:1165 pic:3' TGTGTGAGTGTGTGTGTGTGAGT 5'& |||.|| ||||||||||||||. &5' ACATACACACACACACACACTT- 3' Prpf4 mmu-miR-669n beg:1144 end:1163 pic:3' TGTGTGTAGGTGTGTGTTTA 5'& ||||||| ||||||| &5' ACACACACACACACAC---- 3' Prpf4 mmu-miR-669c beg:1144 end:1169 pic:3' TGTGTGTAGGTGTGTGT-TGATA 5'& ||||||| ||||||| .||. &5' ACACACACACACACACTTGCTG- 3' Prpf4 mmu-miR-574-5p beg:1865 end:1888 pic:3' TGTGTGAGTGTGTGTGTG-TGAGT 5'& .|..||||| ||||| .|| &5' -TATGCTCAC-CACACCCAGCT-- 3' Prpf4 mmu-miR-669n beg:1866 end:1886 pic:3' TGTGTGTAGGTGTGTGTTTA 5'& |..| || |||||| ||. &5' ATGCTCA-CCACACCCAG-- 3' Prpf4 mmu-miR-669c beg:1866 end:1889 pic:3' TGTGTGTAGGTGTGTGTTGATA 5'& |..| || |||||| ||.||| &5' ATGCTCA-CCACACCCAGCTA- 3' Prpf4 mmu-miR-1187 beg:1867 end:1897 pic:3' AATGTGTGTATGTGTG--------TGTGTAT 5'& |.| ||| ||||| |||..|. &5' -TGCTCAC---CACACCCAGCTAAACATGTG 3' Prpf4 mmu-miR-1188 beg:2601 end:2627 pic:3' AGGACCGGGTTGGA---GTGTGGT 5'& ||| ||.||.|| |||||| &5' TCCGTCCCTAATCTAAGCACACC- 3' Prpf4 mmu-miR-1188 beg:247 end:270 pic:3' AGGACCG-GGTTGGAGTGTGGT 5'& |||| | || ||||||||. &5' -CCTGCCTCCTCCCTCACACT- 3' Prpf4 mmu-miR-574-5p beg:250 end:272 pic:3' TGTGTGAGTGTGTGTGTGTGAGT 5'& .| ||| | | | |||||||| &5' --GC-CTC-CTCCCTCACACTCA 3' Prpf4 mmu-miR-2136 beg:255 end:273 pic:3' GTGTAGAGTCAGTTGTGGGTC 5'& ||| || ||||.||| &5' -----CTCCCTC-ACACTCAG 3' Prpf4 mmu-miR-34b-5p beg:2921 end:2940 pic:3' TGTTAGTCGATTAATGTGACGGA 5'& .|. |||||||| &5' ------GGTGACTAACACTGCC- 3' Prpf4 mmu-miR-34c beg:2921 end:2940 pic:3' CGTTAGTCGATTGA-TGTGACGGA 5'& | |.||| |||||||| &5' -------GGTGACTAACACTGCC- 3' Prpf4 mmu-miR-449a beg:2921 end:2940 pic:3' TGGTCGATTGTTATGTGACGGT 5'& | |.|| |||||||| &5' ----GGTGACTA-ACACTGCC- 3' Prpf4 mmu-miR-449b beg:2921 end:2940 pic:3' CGGTCGATTG-TTGTGACGGA 5'& | |.|| ||||||||| &5' ----GGTGACTAACACTGCC- 3' Prpf4 mmu-miR-34a beg:2922 end:2940 pic:3' TGTTGGTCGATTCTGTGACGGT 5'& . ||.| |||||||| &5' GTGACTA------ACACTGCC- 3' Prpf4 mmu-miR-468 beg:1889 end:1909 pic:3' GTCTGTGTGCG-TGTAGTCAGTAT 5'& |||.|. |. |||||||| &5' -----ACATGTGATTCCAGTCATA 3' Prpf4 mmu-miR-141 beg:2009 end:2026 pic:3' GGTAGAAATGGTCTGTCACAAT 5'& |||||| |||||||| &5' -CATCTT------ACAGTGTT- 3' Prpf4 mmu-miR-763 beg:2896 end:2907 pic:3' CGGTGACCAAGAAGGGTCGACC 5'& .||||||| &5' -------------TCCAGCTG- 3' Prpf4 mmu-miR-490 beg:1516 end:1534 pic:3' GTCGTACCTCAGGAGGTCCAAC 5'& |||| | ||||||| &5' ------GGAGAACACCAGGTT- 3' Prpf4 mmu-miR-695 beg:2871 end:2890 pic:3' AAGTCAGTGGATA-C-GGGTTAGA 5'& |||| | ||||||| &5' -------ACCTTGAGCCCCAATC- 3' Prpf4 mmu-miR-147 beg:1609 end:1626 pic:3' ATCGTCTTCGTAAAGGCGTGTG 5'& .|.| |||||||| &5' -------GGTAAATCCGCACA- 3' Prpf4 mmu-miR-3475 beg:2885 end:2904 pic:3' AAGTTTGGTACACGGAGGTCT 5'& || |||| ||||||| &5' -TC-AACCTCC--CCTCCAG- 3' Prpf4 mmu-miR-1943 beg:2839 end:2855 pic:3' AGGTCCACGGGTCT-AGGAGGGAA 5'& |||. |||||||| &5' ----------CAGGCTCCTCCCT- 3' Prpf4 mmu-miR-298 beg:2790 end:2808 pic:3' CCCTTCTTGTCGGGAGGAGACGG 5'& ||||. |||||||. &5' --------CAGCTGCCCTCTGCT 3' Prpf4 mmu-miR-698 beg:743 end:754 pic:3' TCCCTTCCTTTGCTCTTAC 5'& |||||||| &5' -----------CGAGAATG 3' Prpf4 mmu-miR-1897-3p beg:2127 end:2145 pic:3' GAGTGGCCTGTCTTGCTCAACT 5'& | || |||||||. &5' ------GAGCATT-CGAGTTGG 3' Prpf4 mmu-miR-1941-3p beg:2969 end:2980 pic:3' TACCCTCTATGACGATTCTAC 5'& |||||||| &5' ------------GCTAAGAT- 3' Prpf4 mmu-miR-98 beg:2245 end:2265 pic:3' TTGTTATGTTGAATGATGGAGT 5'& || .||| |||||||| &5' --CATT-TAACC--CTACCTCA 3' Prpf4 mmu-miR-1961 beg:2247 end:2265 pic:3' AAGATTGATGATGGAGT 5'& |.|||| |||||||| &5' -TTTAACC-CTACCTCA 3' Prpf4 mmu-let-7d beg:2249 end:2264 pic:3' TTGATACGTTGGATGATGGAGA 5'& .|||| ||||||| &5' -------TAACC--CTACCTC- 3' Prpf4 mmu-let-7a beg:2249 end:2265 pic:3' TTGATATGTTGGATGATGGAGT 5'& .|||| |||||||| &5' -------TAACC--CTACCTCA 3' Prpf4 mmu-let-7e beg:2249 end:2265 pic:3' TTGATATGTTGGAGGATGGAGT 5'& .||| ||||||||| &5' -------TAAC--CCTACCTCA 3' Prpf4 mmu-let-7f beg:2254 end:2265 pic:3' TTGATATGTTAGATGATGGAGT 5'& |||||||| &5' --------------CTACCTCA 3' Prpf4 mmu-miR-384-3p beg:2088 end:2107 pic:3' TAACACTTGTTAAAGATCCTTA 5'& ||||| ||||||| &5' ----TGAACCTTA-CTAGGAA- 3' Prpf4 mmu-miR-674 beg:2251 end:2268 pic:3' ATGTGGTGAGGGTAGAGTCACG 5'& || ||.| ||||||| &5' ------AC-CCTACCTCAGTG- 3' Prpf4 mmu-miR-194 beg:1299 end:1317 pic:3' AGGTGTACCTCAACGACAATGT 5'& ||||| ||||||| &5' TCCACTTT------CTGTTAC- 3' Prpf4 mcmv-miR-m01-3 beg:1572 end:1590 pic:3' AGCTCCGTTGTCAGCGAAGTGGC 5'& | |. | |||||||| &5' -----GTGAT--TGGCTTCACC- 3' Prpf4 mmu-miR-1958 beg:723 end:742 pic:3' TGAATGACGAA-GGTGAAAGGAT 5'& || | |||||||. &5' -------GCGAGCTCCTTTCCTG 3' Prpf4 mmu-miR-203star beg:2226 end:2246 pic:3' ACAACTTGACAGTTCTTGGTGA 5'& ||||. | ||||||||| &5' ---TGAATGG-C-AGAACCACT 3' Prpf4 mmu-miR-1199 beg:4 end:24 pic:3' GGCGCGCTGGCCCTGAGTCT 5'& || || || ||||||||| &5' CCACG-GAA--GGACTCAGA 3' Prpf4 mmu-miR-1199 beg:838 end:857 pic:3' GGCGCGCTGGCCCTGAGTCT 5'& || .|.|||||||||| &5' ----GCAGCTGGGACTCAGA 3' Prpf4 mmu-miR-431 beg:2404 end:2422 pic:3' ACGTACTGCCGGA---CGTTCTGT 5'& |||| ||||||| &5' --------GGCCATTGGCAAGAC- 3' Prpf4 mmu-miR-467b beg:1961 end:1972 pic:3' GTATATGTACGTCCGTGAATG 5'& |||||||| &5' ------------GGCACTTA- 3' Prpf4 mmu-miR-719 beg:736 end:751 pic:3' TTGTAAAAAGACATCGGCTCTA 5'& ||| ||||||| &5' ---------CTGACGCCGAGA- 3' Prpf4 mmu-miR-1971 beg:532 end:549 pic:3' AGAGTCGGGT-CGGAAATG 5'& .|| || ||||||| &5' ----GGCGCATGCCTTTA- 3' Prpf4 mmu-miR-455star beg:2060 end:2076 pic:3' GCTACATC-AGGTTTCCGTGTAT 5'& .| ||. ||||||| &5' ------GGATCT---GGCACAT- 3' Prpf4 mmu-miR-290-3p beg:1961 end:1971 pic:3' CCCGAATTTTGATCCGCCGTGAAA 5'& ||||||| &5' ----------------GGCACTT- 3' Prpf4 mmu-miR-764-3p beg:2589 end:2607 pic:3' TGTCAACGGTGATA-CCGGAGGA 5'& ||.||. ||||||| &5' -------CCGCTGCAGGCCTCC- 3' Prpf4 mmu-miR-671-5p beg:1690 end:1706 pic:3' GAGGTCGGGGAGGTC-CCGAAGGA 5'& ||| |||||||| &5' -----------CCATCGGCTTCCT 3' Prpf4 mmu-miR-1982.1 beg:2649 end:2660 pic:3' GACACCCTCTTGTATCCCACTCT 5'& |||||||| &5' ---------------GGGTGAGA 3' Prpf4 mmu-miR-329 beg:1526 end:1545 pic:3' TTTTTCCAATCGACCCACACAA 5'& ||||| ||||||| &5' ----AGGTTTTCA-GGTGTGT- 3' Prpf4 mmu-miR-362-3p beg:1527 end:1545 pic:3' ACTTAGGAACTT---GTCCACACAA 5'& |. ||||||||| &5' ---------GGTTTTCAGGTGTGT- 3' Prpf4 mmu-miR-367 beg:3323 end:3343 pic:3' AGTGGTAACGATTTCACGTTAA 5'& ||||.|| ||||||||| &5' TCACTATC-----AGTGCAATT 3' Prpf4 mmu-miR-363 beg:3327 end:3343 pic:3' ATGTCTACCTATGG-CACGTTAA 5'& ||.| |||||||| &5' ----------TATCAGTGCAATT 3' Prpf4 mmu-miR-706 beg:1762 end:1780 pic:3' AAAAAACTCTGTCCCAAAGAGA 5'& |.|.| ||||||||| &5' ------GGGGCT-GGTTTCTCT 3' Prpf4 mcmv-miR-m01-3 beg:1942 end:1963 pic:3' AGCTCCGTTGTCAGCGAAGTGGC 5'& || |||| || ||||||. &5' TC-AGGCCT---TCCCTTCACT- 3' Prpf4 mcmv-miR-m108-2-3p beg:1399 end:1418 pic:3' TGGCCAGTGAGCAGAGCTCAGTG 5'& |..|| | ||| |||||| &5' ATTGG-C-CTCA----GAGTCA- 3' Prpf4 mcmv-miR-m59-1 beg:2821 end:2841 pic:3' GACTGCCAGCTCCGT-GACGATT 5'& || .||| || ||| |||||| &5' -TG-TGGT-GA-GCATCTGCTA- 3' Prpf4 mcmv-miR-m59-1 beg:2313 end:2334 pic:3' GACTGCCAGCTCCGTGACGATT 5'& ||| |.|| ||||||.| &5' --GAC--TTGAATAACTGCTGA 3' Prpf4 mcmv-miR-m59-1 beg:2679 end:2702 pic:3' GACTGCC-AGCTCCGTGACGATT 5'& |||| || |||||||.|. &5' CTGAAATATCCCGGCACTGTTG- 3' Prpf4 mcmv-miR-M87-1 beg:414 end:438 pic:3' CGACGGCGACGG-CTGCCGACGGA 5'& |||||.| |||| |.| |.||. &5' GCTGCTG-TGCCTGGCAGTTGT-- 3' Prpf4 mghv-miR-M1-1 beg:2179 end:2201 pic:3' TTTCCTTCATGCCGGTAAAGAT 5'& ..||||||| |||||||| &5' -GGGGAAGTAAT-CCATTTCT- 3' Prpf4 mghv-miR-M1-1 beg:3192 end:3212 pic:3' TTTCCTTCATGCCGGTAAAGAT 5'& ||| |||||||| &5' ---GGACTTTTT-CCATTTCT- 3' Prpf4 mghv-miR-M1-3 beg:177 end:199 pic:3' TTCGCGTTGAGGACGAGTGGAG 5'& || ||| .| ||||.||| &5' -AGAACAAAA-TT-CTCATCTC 3' Prpf4 mghv-miR-M1-9 beg:3273 end:3294 pic:3' TTTTTCCAGGTCCG-TTTACACT 5'& |||||| || ||||||| &5' --AAAGGTA-AGCAAAAATGTG- 3' Prpf4 mghv-miR-M1-9 beg:3303 end:3323 pic:3' TTTTTCCAG--GTCCGTTTACACT 5'& ||. .||| |||||||| &5' ------GTTGATAGG-AAATGTGA 3' Prpf4 mghv-miR-M1-9 beg:3370 end:3392 pic:3' TTTTTCCAG-GTCCG--TTTACACT 5'& ||| |||| |||||||. &5' ------GTCTCAGGAGGAAATGTGG 3' Prpf4 mghv-miR-M1-9 beg:1641 end:1662 pic:3' TTTTTCCAGGTCCGT-TTACACT 5'& .|||||. |.| |.||||| &5' --GAAGGTTGT-GTATAGTGTGA 3' Prpf4 mmu-let-7a beg:1419 end:1433 pic:3' TTGATATGTTGGATGATGGAGT 5'& ||| ||.|||| &5' ----------CCTCCTGCCTC- 3' Prpf4 mmu-let-7a beg:2453 end:2471 pic:3' TTGATATGTTGGAT-GATGGAGT 5'& ||.||| .|||||| &5' -------CAGCCTTTTTACCTC- 3' Prpf4 mmu-let-7astar beg:661 end:683 pic:3' CCTTTCTGTC-ATCTAACATATC 5'& |||||.|| |.|| ||||| &5' --AAAGATAGCTGGACTGTAT-- 3' Prpf4 mmu-let-7b beg:2244 end:2265 pic:3' TTGGTGTGTTGGATGATGGAGT 5'& .||. .|||| |||||||| &5' --TCATTTAACC--CTACCTCA 3' Prpf4 mmu-let-7b beg:2453 end:2471 pic:3' TTGGTGTGTTGGAT-GATGGAGT 5'& ||.||| .|||||| &5' -------CAGCCTTTTTACCTC- 3' Prpf4 mmu-let-7b beg:1402 end:1433 pic:3' TTGGTGTGTT-------GGATGATGGAGT 5'& ..|| || |. ||| ||.|||| &5' GGCCTCAGAGTCAAAATCCTCCTGCCTC- 3' Prpf4 mmu-let-7bstar beg:213 end:231 pic:3' CCCTTCCGTCATCCAACATATC 5'& |.|| ||||||||| &5' ------GTAGAT-GTTGTATAG 3' Prpf4 mmu-let-7c beg:1412 end:1433 pic:3' TTGGTATGTTGGATGATGGAGT 5'& .|| | ||| ||.|||| &5' --TCAAAAT-CCTCCTGCCTC- 3' Prpf4 mmu-let-7c beg:2244 end:2265 pic:3' TTGGTATGTTGGATGATGGAGT 5'& .||| .|||| |||||||| &5' --TCATTTAACC--CTACCTCA 3' Prpf4 mmu-let-7c-1star beg:984 end:1002 pic:3' CCTTTCGATCTTCCAACATGTC 5'& |. | ||||||||| &5' -----GTCTGT--GTTGTACAG 3' Prpf4 mmu-let-7c-1star beg:214 end:231 pic:3' CCTTTCGATCTTCCAACATGTC 5'& |||| ||||||.|| &5' -------TAGAT-GTTGTATAG 3' Prpf4 mmu-let-7c-2star beg:661 end:683 pic:3' CCTTTCTGTC-ATCTAACATATC 5'& |||||.|| |.|| ||||| &5' --AAAGATAGCTGGACTGTAT-- 3' Prpf4 mmu-let-7d beg:1419 end:1434 pic:3' TTGATACGTTGGATGATGGAGA 5'& ||| ||.||||| &5' ----------CCTCCTGCCTCT 3' Prpf4 mmu-let-7d beg:2451 end:2472 pic:3' TTGATAC-GTTGGAT-GATGGAGA 5'& | ||.||| .||||||| &5' ------GTCAGCCTTTTTACCTCT 3' Prpf4 mmu-let-7d beg:1838 end:1856 pic:3' TTGATACGT-TGGATGATGGAGA 5'& || .||| ||.|||. &5' ------GCTTGCCT-CTGCCTT- 3' Prpf4 mmu-let-7e beg:1419 end:1433 pic:3' TTGATATGTTGGAGGATGGAGT 5'& ||||||.|||| &5' ----------CCTCCTGCCTC- 3' Prpf4 mmu-let-7e beg:991 end:1012 pic:3' TTGATATGTTGGAGGATGGAGT 5'& .|.||||.|||||| ||| &5' --TTGTACAGCCTCCTTCCT-- 3' Prpf4 mmu-let-7e beg:1825 end:1850 pic:3' TTGATATGTT-GGAGGATGGAGT 5'& |||| .| || |.|.|||| &5' AACTCAGAGATCCGCTTGCCTC- 3' Prpf4 mmu-let-7e beg:2777 end:2793 pic:3' TTGATATGTTGGAGGATGGAGT 5'& ||.|.| |||.||| &5' -------CAGCTT-CTATCTC- 3' Prpf4 mmu-let-7f beg:1416 end:1433 pic:3' TTGATATGTTAGAT-GATGGAGT 5'& |||| ||.|||| &5' --------AATCCTCCTGCCTC- 3' Prpf4 mmu-let-7g beg:1420 end:1433 pic:3' TTGACATGTTTGATGATGGAGT 5'& || ||.|||| &5' -----------CTCCTGCCTC- 3' Prpf4 mmu-let-7g beg:2243 end:2265 pic:3' TTGACATGT---TTGATGATGGAGT 5'& |||| || ||| |||||||| &5' --CTGT-CATTTAACC-CTACCTCA 3' Prpf4 mmu-let-7g beg:1803 end:1828 pic:3' TTGACAT---GTTTGATGATGGAGT 5'& |||||| ||..||. .||||| &5' -ACTGTAGACCAGGCTG--GCCTCA 3' Prpf4 mmu-let-7g beg:2451 end:2471 pic:3' TTGACATGTTTGAT-GATGGAGT 5'& || ||. || .|||||| &5' ----GT-CAGCCTTTTTACCTC- 3' Prpf4 mmu-let-7gstar beg:1642 end:1658 pic:3' CGTTCCGTCACCGG-ACATGTCA 5'& ||.. ||||.||| &5' ----------GGTTGTGTATAGT 3' Prpf4 mmu-let-7i beg:2243 end:2265 pic:3' TTGTC-GTGT-TTGATGATGGAGT 5'& | ||. ||| |||||||| &5' ----GTCATTTAACC-CTACCTCA 3' Prpf4 mmu-let-7istar beg:518 end:541 pic:3' TCGTTCCGTCATCGAACGCGTC 5'& .|| |||||||.|. ||||| &5' GGCTAGGCAGTGGTG-GCGCA- 3' Prpf4 mmu-miR-106a beg:1216 end:1228 pic:3' GATGGACGTGACAATCGTGAAAC 5'& ||||.|||| &5' --------------AGCATTTTG 3' Prpf4 mmu-miR-106a beg:305 end:319 pic:3' GATGGACGTGACAATCGTGAAAC 5'& ||.|||.|||| &5' ------------TTGGCATTTTG 3' Prpf4 mmu-miR-106b beg:984 end:1005 pic:3' TAGACGTGACA-GTCGTGAAAT 5'& .|||| .||| |||| || &5' GTCTGTGTTGTACAGC-CT--- 3' Prpf4 mmu-miR-106b beg:305 end:319 pic:3' TAGACGTGACAGTCGTGAAAT 5'& | |||.|||. &5' ----------TTGGCATTTTG 3' Prpf4 mmu-miR-1186 beg:536 end:557 pic:3' GTACGGAAATTAAGGTCGTGAG 5'& |||||||||||| ||||| &5' CATGCCTTTAATCCCAGC---- 3' Prpf4 mmu-miR-1186 beg:2687 end:2698 pic:3' GTACGGAAATTAAGGTCGTGAG 5'& ||.||||| &5' -------------CCGGCACT- 3' Prpf4 mmu-miR-1186b beg:1888 end:1903 pic:3' CACCACGTACGGAAATTAGGGT 5'& ||||. .||.||| &5' ------CATGT----GATTCCA 3' Prpf4 mmu-miR-1186b beg:3363 end:3379 pic:3' CACCACGTACGGAAATTAGGGT 5'& |||| ||.||.|| &5' --GGTGA-------TAGTCTCA 3' Prpf4 mmu-miR-1186b beg:530 end:555 pic:3' CACCACGTACGGAAATTAGGGT 5'& |||| ||||||||||||||||| &5' GTGGCGCATGCCTTTAATCCCA 3' Prpf4 mmu-miR-1188 beg:1676 end:1696 pic:3' AGGACCGGGTTGGA-GTGTGGT 5'& .||| |. | ||||||| &5' --TTGGA--AGTTTACACACCA 3' Prpf4 mmu-miR-1191 beg:836 end:853 pic:3' ATCCCGATGTATCATTCTGAC 5'& ||.|| |..|||| &5' -----CTGCAGC-TGGGACT- 3' Prpf4 mmu-miR-1191 beg:2024 end:2044 pic:3' ATCCCGATGTATCATTCTGAC 5'& |. ||. |.|||||| &5' ----GTAAAATGATGAGACTG 3' Prpf4 mmu-miR-1191 beg:2650 end:2663 pic:3' ATCCCGATGTATCATTCTGAC 5'& .||.|||||| &5' -----------GGTGAGACTG 3' Prpf4 mmu-miR-1195 beg:1782 end:1807 pic:3' ACTCGTCCGACCGGAGCTTGAGT 5'& | ||||||| ||| ||||||| &5' -GCCCAGGCTGTCCTAGAACTCA 3' Prpf4 mmu-miR-1195 beg:1809 end:1834 pic:3' ACTCGTCCGACCGGAGCTTGAGT 5'& || |||||||||||| |||||| &5' -GACCAGGCTGGCCTCAAACTCA 3' Prpf4 mmu-miR-1196 beg:559 end:580 pic:3' TCCGTCTCCGTCCATCTAAA 5'& ||||||||||.|| |||| &5' AGGCAGAGGCGGGCAGAT-- 3' Prpf4 mmu-miR-1197 beg:1779 end:1800 pic:3' TCTTCATCTGGTAC-ACAGGAT 5'& |||| ||| ||||||| &5' -GAAGC---CCAGGCTGTCCTA 3' Prpf4 mmu-miR-1197 beg:2527 end:2541 pic:3' TCTTCATCTGGTACACAGGAT 5'& || ||||||.|. &5' ---------CC-TGTGTCTTG 3' Prpf4 mmu-miR-1197 beg:12 end:35 pic:3' TCTTCA-TCTGGTACACAGGAT 5'& ||.| ||| |||||.|| &5' AGGACTCAGAACTTGTGTTCT- 3' Prpf4 mmu-miR-1199 beg:1815 end:1836 pic:3' GGCGCGCTGGCCC-TGAGTCT 5'& || .|.|| ||||||| &5' --GC-TGGCCTCAAACTCAGA 3' Prpf4 mmu-miR-122 beg:1583 end:1603 pic:3' GTTTGTGGTAACAGTGTGAGGT 5'& |||| ||| .||||||| &5' ----CACC-TTGCTGCACTCCA 3' Prpf4 mmu-miR-124star beg:2816 end:2836 pic:3' TAGTTCCAGGCGACACTTGTGC 5'& || ||| .| ||||.||. &5' -TCT-GGTGTG--GTGAGCAT- 3' Prpf4 mmu-miR-125a-3p beg:1945 end:1965 pic:3' CC-GAGGGTTCTTGGAGTGGACA 5'& || ||.|| |.||||.|| &5' GGCCTTCC-----CTTCACTTG- 3' Prpf4 mmu-miR-125b-3p beg:612 end:637 pic:3' TCGAGGGTTCT--CGGATT-GGGCA 5'& ||.|| |.|| |||| |.| &5' AGTTCA-AGGACAGCCTTTTCTC-- 3' Prpf4 mmu-miR-1274a beg:2710 end:2733 pic:3' ACCGCGGA--CTTGTC-CCTGGACT 5'& ||| |.||| |||||||. &5' -----CCTCAGGACATAGGACCTGG 3' Prpf4 mmu-miR-127star beg:1569 end:1588 pic:3' TAGTCTCGGGAGACTCGAAGTC 5'& .|||| | .|| |||||| &5' GTCAGTGA---TTG-GCTTCA- 3' Prpf4 mmu-miR-128 beg:1379 end:1394 pic:3' TTTCTCTGGCCA-AGTGACACT 5'& ||| |.|||||| &5' ---------GGTCTTACTGTG- 3' Prpf4 mmu-miR-130bstar beg:3087 end:3109 pic:3' TCATCACGTTGTC---CCTTTCTCA 5'& ||.| ||||||.| &5' -----TGTATTCTGAAGGAAAGGG- 3' Prpf4 mmu-miR-135a beg:740 end:768 pic:3' AGTGTATCCTTATTT----TTCGGTAT 5'& |.| ||||.|| .||||||| &5' -CGCCGA-GAATGAAACCAGAGCCATA 3' Prpf4 mmu-miR-135astar beg:2836 end:2858 pic:3' GCGGTG-CCGAGGTTAGGGATAT 5'& ||.|| |||||| |||||.|. &5' -GCTACAGGCTCC--TCCCTGTG 3' Prpf4 mmu-miR-135astar beg:3130 end:3152 pic:3' GCGGTGCCGAGGTTAGGGATAT 5'& ||| ||||||||. .||. &5' -GCCTCGGCTCCAGCATCTG-- 3' Prpf4 mmu-miR-139-5p beg:1708 end:1728 pic:3' GACCTCTGTGCACGT---GACATCT 5'& .| | ||| ||||||| &5' ------GC-CCTGCTCTTCTGTAGA 3' Prpf4 mmu-miR-140 beg:2481 end:2502 pic:3' GATGGTATCCCATTTTGGTGAC 5'& |.||||.| |||.||||| &5' -TGCCATGGAC--AAATCACTG 3' Prpf4 mmu-miR-142-3p beg:2915 end:2939 pic:3' AGGTATTTCATC-CT--TTGTGATGT 5'& .|| ||.| || ||||||.| &5' ---GTATTGTGGTGACTAACACTGC- 3' Prpf4 mmu-miR-143 beg:1423 end:1442 pic:3' CTCGATGTCACGAAGTAGAGT 5'& ||.| || ||||||| &5' ---CTGCCT--CTGCATCTCA 3' Prpf4 mmu-miR-145star beg:1501 end:1523 pic:3' GTTCTTGTCATAAAGGTCCTTA 5'& |||. || ||||||. &5' --AGAGTTGTTGGCCCAGGAG- 3' Prpf4 mmu-miR-146a beg:1543 end:1563 pic:3' TTGGGTACCTTAAG---TCAAGAGT 5'& ||| .||| ||||||. &5' ------TGG-GTTCCATAGTTCTT- 3' Prpf4 mmu-miR-146a beg:2065 end:2086 pic:3' TTGGGTACCTT---AAGTCAAGAGT 5'& ||| || ||||||| &5' ------TGGCACATTTGAGTTCTC- 3' Prpf4 mmu-miR-146a beg:3391 end:3409 pic:3' TTGGGTACCTTAAGTCAAGAGT 5'& |||. |||||.|| &5' -ACCTTTA-----CAGTTTTC- 3' Prpf4 mmu-miR-146a beg:20 end:37 pic:3' TTGGGTACCTTAAGTCAAGAGT 5'& |||. | ||||||| &5' AACTTGT--------GTTCTCA 3' Prpf4 mmu-miR-146b beg:2065 end:2086 pic:3' TCGGATACCTT---AAGTCAAGAGT 5'& ||| || ||||||| &5' ------TGGCACATTTGAGTTCTC- 3' Prpf4 mmu-miR-146bstar beg:2164 end:2186 pic:3' TGGTCTTGACTCAGGGATCCCG 5'& .|| ||.| ||| .||.||| &5' GCC-GAGCA-AGTGTCTGGGG- 3' Prpf4 mmu-miR-148astar beg:7 end:28 pic:3' TCAGCCTCACAGAGTCTTGAAA 5'& |||| | |||||||||| &5' ---CGGAAGGACTCAGAACTT- 3' Prpf4 mmu-miR-151-3p beg:585 end:608 pic:3' GGAGTTCC--TCGGAGTCAGATC 5'& .| ||| ||||| .||||| &5' -TTTGAGGCCAGCCT-GGTCTA- 3' Prpf4 mmu-miR-151-3p beg:614 end:639 pic:3' GGAGTTCCT--CGGAGTC-AGATC 5'& .||||||| ||||. |||| &5' -TTCAAGGACAGCCTTTTCTCTA- 3' Prpf4 mmu-miR-151-3p beg:3119 end:3143 pic:3' GGAGTTC--CTCGGAGTC-AGATC 5'& || .|.| |||||||.| || &5' CCCTAGGCTGAGCCTCGGCTC--- 3' Prpf4 mmu-miR-154star beg:2809 end:2830 pic:3' TTATCCAGTT--GGCACATACTAA 5'& ||| |.| ||.||.| &5' ----GGTATGCTCTG-GTGTGGT- 3' Prpf4 mmu-miR-155 beg:385 end:408 pic:3' TGGGGATAGTGTTAATCGTAATT 5'& .|||.| . | |.|||||| &5' GCCCTTCGAGTGA-TGGCATTA- 3' Prpf4 mmu-miR-15a beg:410 end:424 pic:3' GTGTTTGGTAATACACGACGAT 5'& ||||||||||. &5' -----------ATGTGCTGCTG 3' Prpf4 mmu-miR-15astar beg:2421 end:2443 pic:3' ACTCC-GTCGTGTCATACCGGAC 5'& ||| | | .|| |.||||||| &5' --AGGACCGGGCA-TGTGGCCTG 3' Prpf4 mmu-miR-15b beg:401 end:424 pic:3' ACATTTGGTAC---TACACGACGAT 5'& |..||| ||||||||||. &5' -----ATTATGGAAATGTGCTGCTG 3' Prpf4 mmu-miR-16 beg:410 end:424 pic:3' GCGGTTATAAATGCACGACGAT 5'& |.||||||||. &5' -----------ATGTGCTGCTG 3' Prpf4 mmu-miR-17star beg:1797 end:1813 pic:3' GATGTTCACGGGAGTGACGTCA 5'& | |||||||.|| &5' --------GAACTCACTGTAG- 3' Prpf4 mmu-miR-17star beg:2585 end:2601 pic:3' GATGTTCACGGGAGTGACGTCA 5'& | | |.|||||| &5' --------GGCACCGCTGCAG- 3' Prpf4 mmu-miR-17star beg:822 end:845 pic:3' GATG-TTCACGGGAGTGACGTCA 5'& || ||| . .||||||||| &5' --ACGAAGGATGTTCACTGCAG- 3' Prpf4 mmu-miR-182 beg:77 end:99 pic:3' GCCACACTCAAGATGGTA------ACGGTTT 5'& ||||.||| ||||||| &5' ----------TCTATCATGTTTCCTGCCAAA 3' Prpf4 mmu-miR-1839-5p beg:1838 end:1856 pic:3' GTTCTGGACAAGATAGATGGAA 5'& .|.|| |||.|||| &5' ----GCTTGCC---TCTGCCTT 3' Prpf4 mmu-miR-1839-5p beg:2455 end:2478 pic:3' GTTCTGGACAAGAT----AGATGGAA 5'& .||| ||.|| |||.||| &5' ----GCCT-TTTTACCTCTCTGCCT- 3' Prpf4 mmu-miR-184 beg:2975 end:2995 pic:3' TGGGAATAGTCAAGAGGCAGGT 5'& |.||| |||.|||. &5' ATCCTAACC----CTCTGTCT- 3' Prpf4 mmu-miR-185 beg:1657 end:1675 pic:3' AGTCCTTGACGGAAAGAGAGGT 5'& ||| || ||||||| &5' ----GAAATTCC---CTCTCCA 3' Prpf4 mmu-miR-188-3p beg:2041 end:2066 pic:3' ACGT---TTGGGACGTACACCCTC 5'& ||| |.|||||||| |||| &5' -GCATAGAGCCCTGCATTCGGGA- 3' Prpf4 mmu-miR-1893 beg:2840 end:2860 pic:3' GCTCCGCAGGTCGCGGGCGCGG 5'& |||| ||| | ||.|.||. &5' --AGGC-TCCT-C-CCTGTGCT 3' Prpf4 mmu-miR-1894-5p beg:1345 end:1357 pic:3' TCTCCGTCCACCATCCCCTCTC 5'& |||||.||| &5' -------------AGGGGGGAG 3' Prpf4 mmu-miR-1894-5p beg:1757 end:1768 pic:3' TCTCCGTCCACCATCCCCTCTC 5'& ||||||.| &5' --------------GGGGAGGG 3' Prpf4 mmu-miR-1896 beg:1626 end:1644 pic:3' GAGGAGTGGGTGGTAGTCTCTC 5'& || . ||||||| &5' -----CAGTAATT-TCAGAGA- 3' Prpf4 mmu-miR-1896 beg:1816 end:1838 pic:3' GAGGAGTGG-GTGGTAGTCTCTC 5'& || .|| || ||||||| &5' ---CTGGCCTCAAACTCAGAGA- 3' Prpf4 mmu-miR-1898 beg:2525 end:2545 pic:3' CTAGGGGACACTTGGAACTGGA 5'& |.|||||| .|||||..| &5' ---CTCCTGTG--TCTTGATTT 3' Prpf4 mmu-miR-18a beg:1023 end:1038 pic:3' GATAGACGTGATCTACGTGGAAT 5'& .|.||.|||||| &5' -----------GGGTGTACCTTA 3' Prpf4 mmu-miR-18a beg:1209 end:1235 pic:3' GATAGA--CGTGATCTACGTGGAAT 5'& ||||.| |||.| .|| |||| &5' CTATTTCAGCATTTTGTGAACCT-- 3' Prpf4 mmu-miR-1902 beg:1421 end:1441 pic:3' TTCAGTACGGATGACGTGGAGA 5'& || ||||| |||||.||| &5' ---TCCTGCCT-CTGCATCTC- 3' Prpf4 mmu-miR-1903 beg:3164 end:3185 pic:3' ACAGAGTCCTTCTTCTTCTTCC 5'& ||||| |||.||.| |||| &5' -GTCTCTGGAGGAGG-AGAA-- 3' Prpf4 mmu-miR-1904 beg:2539 end:2559 pic:3' GGAGGGAGGTCTCC--TCGTCTTG 5'& |. ||| ||||||. &5' ------TTTGGAGCTTAGCAGAG- 3' Prpf4 mmu-miR-1905 beg:1759 end:1774 pic:3' GATGGCGCACCACCCTGACCAC 5'& || |||.||||| &5' ---------GGAGGGGCTGGT- 3' Prpf4 mmu-miR-1907 beg:406 end:423 pic:3' TGGAGGTCTAGGAGACGACGAG 5'& .|| | ||||||| &5' ------GGAAA-TGTGCTGCT- 3' Prpf4 mmu-miR-190b beg:690 end:714 pic:3' TTGGGTTATAG--TTTGTATAGT 5'& ||||.| ..||||.||| &5' --CCCAGTTATGAGGACATGTCA 3' Prpf4 mmu-miR-1928 beg:1380 end:1399 pic:3' CTC-GACCGTTACATCGA 5'& |.| || | .||||||| &5' GGGTCTTACTGTGTAGCT 3' Prpf4 mmu-miR-1928 beg:2427 end:2440 pic:3' CTCGACCGTTACATCGA 5'& ||| ||||.|| &5' -----GGC-ATGTGGC- 3' Prpf4 mmu-miR-1929 beg:1427 end:1449 pic:3' GAGACG-AGATATTTCAGGATCTT 5'& |||||| ||| |||||||. &5' CTCTGCATCTC--AAGTCCTG--- 3' Prpf4 mmu-miR-1929 beg:2467 end:2492 pic:3' GAGACGAGATATTTCAGG-ATCTT 5'& |||||| ||.|..| || |.|| &5' CTCTGC-CTGTGGATGCCATGGA- 3' Prpf4 mmu-miR-1929 beg:1788 end:1803 pic:3' GAGACGAGATATTTCAGGATCTT 5'& ||| ||||||||| &5' ----GCT-------GTCCTAGAA 3' Prpf4 mmu-miR-1933-5p beg:914 end:932 pic:3' TTTGATTCTGGCTTGTGGTACTGA 5'& ||. .|||||| &5' -------GATATCCT-TCATGAC- 3' Prpf4 mmu-miR-1934 beg:3148 end:3167 pic:3' TCTCCTGCTTCGTCC---CCTGGTCT 5'& || ||.||||. &5' ----------GCTTCCTTGGGCCAGG 3' Prpf4 mmu-miR-1934 beg:557 end:581 pic:3' TCTCCTGCTTCGTCCC-CTGGTCT 5'& .|||| ||.||.|| ||.| &5' GGAGGCAGAGGCGGGCAGATC--- 3' Prpf4 mmu-miR-1935 beg:2788 end:2809 pic:3' TCTCTAGG-CGGTCGGAGACGGA 5'& ||| ||. |||||||.| &5' -----TCCAGCTGCCCTCTGCTT 3' Prpf4 mmu-miR-1935 beg:2973 end:2995 pic:3' TCTCTAGGCGGTCGGAGACGGA 5'& |||||| ||||||.|| &5' --AGATCCTAAC-CCTCTGTCT 3' Prpf4 mmu-miR-1935 beg:3200 end:3220 pic:3' TCTCTAGGCGGTC-GGAGACGGA 5'& ||| .. .||||||| &5' -----TCCATTTCTTCTCTGCC- 3' Prpf4 mmu-miR-1935 beg:1830 end:1855 pic:3' TCTCTAGGCGGTCGGAGACGGA 5'& ||||||||||. |||||||||| &5' AGAGATCCGCTTGCCTCTGCCT 3' Prpf4 mmu-miR-193star beg:2 end:22 pic:3' AGTAGAAC-GG-GCGTTTCTGGGT 5'& | || || ||.|||.|| &5' -------GACCACGGAAGGACTCA 3' Prpf4 mmu-miR-1940 beg:2890 end:2913 pic:3' TTGACGAGGTGGAAGAGTCA--GGAGGTA 5'& |||| || || ||| .|||.| &5' -----CTCC-CC-TC-CAGCTGTCTCTA- 3' Prpf4 mmu-miR-1940 beg:3179 end:3208 pic:3' TTGACGAGGTGGAAGAGTC---AGGAGGTA 5'& | |||||| | |..||||| &5' ----GAAATTCCTTCTTGGACTTTTTCCAT 3' Prpf4 mmu-miR-1941-5p beg:2155 end:2182 pic:3' TTCGGAGACATGG-TCGTAGAGGGA 5'& ||||||. .|| |||| | .|| &5' AAGCCTTAG-GCCGAGCAAGTGTCT 3' Prpf4 mmu-miR-1942 beg:2824 end:2839 pic:3' GTTGGTCTACTTCTGTAGACT 5'& |.||| .|||||| &5' ------GGTGA--GCATCTG- 3' Prpf4 mmu-miR-1943 beg:992 end:1012 pic:3' AGGTCCACGGGTCT-AGGAGGGAA 5'& || ||| ||||.||| &5' ------TGTACAGCCTCCTTCCT- 3' Prpf4 mmu-miR-1943 beg:243 end:263 pic:3' AGGTCCACGGGTCT-AGGAGGGAA 5'& || |||||| |||||||| &5' --CA-GTGCCCTGCCTCCTCCCT- 3' Prpf4 mmu-miR-1944 beg:2036 end:2052 pic:3' TTAGTCTTGAACTGTAAGTCGTGTCTC 5'& ||| .|||.|||| &5' -----------GACT---GGCATAGAG 3' Prpf4 mmu-miR-194 beg:1917 end:1940 pic:3' AGGTGTACCTCAACGACAATGT 5'& |||..|| || |||||||| &5' TCCGTATAT-GTGGCTGTTAC- 3' Prpf4 mmu-miR-1946a beg:584 end:605 pic:3' TTTTCACACACGGTGGTGACGGGCCGA 5'& || || .||| |||.||. &5' ------GTTTGAGGCCA--GCCTGGT- 3' Prpf4 mmu-miR-1946b beg:699 end:728 pic:3' TTTTC-GTACAC-GGTGGTGACGGGCCG 5'& .|.| ||||| ||||||.| . .||| &5' -GAGGACATGTCACCACCATT-TGTGGC 3' Prpf4 mmu-miR-1948 beg:2425 end:2444 pic:3' GACATGCTC--ACGAGACGGATTT 5'& ||.| ||. ||||.| &5' -----CGGGCATGTG--GCCTGA- 3' Prpf4 mmu-miR-1948 beg:411 end:430 pic:3' GACATGCTCACGAGACGGATTT 5'& |||.| |||| |||||.. &5' -TGTGC---TGCTGTGCCTGG- 3' Prpf4 mmu-miR-1949 beg:2798 end:2817 pic:3' TTGATACGACTGTAGGACCATATC 5'& || |||| |||||||||. &5' --CTCTGCT----TCCTGGTATG- 3' Prpf4 mmu-miR-1949 beg:2811 end:2829 pic:3' TTGATACGACTGTAGGACCATATC 5'& |||||| |||||.|.| &5' ---TATGCT------CTGGTGTGG 3' Prpf4 mmu-miR-1949 beg:1729 end:1747 pic:3' TTGATACGACTGTAGGACCATATC 5'& ||| ||||||| &5' --------TGAATATATGGTATA- 3' Prpf4 mmu-miR-195 beg:411 end:424 pic:3' CGGTTATAAAGACACGACGAT 5'& |||||||||. &5' -----------TGTGCTGCTG 3' Prpf4 mmu-miR-1953 beg:2511 end:2526 pic:3' GTCTTCGGACTCTTGAAAGGGT 5'& | |.|||||.|| &5' ---------GTGGACTTTTCC- 3' Prpf4 mmu-miR-1955 beg:470 end:489 pic:3' TTTTCGACGTCACGTAGGACCCTGA 5'& |.| ||.. |.||||||| &5' -------GTA-TGTG-CTTGGGACT 3' Prpf4 mmu-miR-1955 beg:831 end:853 pic:3' TTTTCGACGTCACGTAGGACCCTGA 5'& |.| || |||| |||||||| &5' ----GTT-CACTGCAG-CTGGGACT 3' Prpf4 mmu-miR-1959 beg:1418 end:1441 pic:3' GAGGT-GACTC-GATGTAGGGG 5'& ||| ||| ||.||||.| &5' -TCCTCCTGCCTCTGCATCTC- 3' Prpf4 mmu-miR-1959 beg:3061 end:3078 pic:3' GAGGTGACTCGATGTAGGGG 5'& |||| | .|||||. &5' CTCCCCG-----GCATCCT- 3' Prpf4 mmu-miR-1959 beg:2890 end:2912 pic:3' GAGGTGAC-TCGATGTAGGGG 5'& |||| || |||| .||.|. &5' CTCCCCTCCAGCT--GTCTCT 3' Prpf4 mmu-miR-1959 beg:2846 end:2869 pic:3' GAGGTGACTCGATGTA-GGGG 5'& |||| ||| ||| .| |||. &5' CTCC-CTGTGCTCTGTACCCT 3' Prpf4 mmu-miR-1961 beg:1420 end:1433 pic:3' AAGATTGATGATGGAGT 5'& || ||.|||| &5' ------CTCCTGCCTC- 3' Prpf4 mmu-miR-1962 beg:2767 end:2788 pic:3' TACACAGGGTCACGGTCGGAGA 5'& || |...|| |||||.||| &5' --GT-TTTTAGC-CCAGCTTCT 3' Prpf4 mmu-miR-1962 beg:2451 end:2464 pic:3' TACACAGGGTCACGGTCGGAGA 5'& |.||||||.| &5' ------------GTCAGCCTTT 3' Prpf4 mmu-miR-1962 beg:613 end:632 pic:3' TACACAGGGTCACGGTCGGAGA 5'& ||.| || ||||||.| &5' ----GTTCAAGGA-CAGCCTTT 3' Prpf4 mmu-miR-1962 beg:983 end:1006 pic:3' TACACAGGGTCACG----GTCGGAGA 5'& ||||. |||. ||||||| &5' ---TGTCT--GTGTTGTACAGCCTC- 3' Prpf4 mmu-miR-1968 beg:2332 end:2348 pic:3' TCAGGTGGTAGGAATTGTCGACGT 5'& ..||| ||||||.| &5' ---TTACC--------CAGCTGTA 3' Prpf4 mmu-miR-1968 beg:2780 end:2800 pic:3' TCAGGTGGTAGGAATTGTCGACGT 5'& |. |.|||. ||||||| &5' ---CTTCTATCTC---CAGCTGC- 3' Prpf4 mmu-miR-1968 beg:759 end:780 pic:3' TCAGGTGGTAGGAATTGTCGACGT 5'& .|||| .||||||. &5' -----GCCATAGACTGCAGCTGT- 3' Prpf4 mmu-miR-1969 beg:2178 end:2198 pic:3' TGGGTACAATTTCAG-AGGTAGAA 5'& || .|||| |||||.| &5' -----TGGGGAAGTAATCCATTT- 3' Prpf4 mmu-miR-196a beg:1878 end:1902 pic:3' GGGTTG--TTGTACTTTGATGGAT 5'& ||||.| |||||| .|.| || &5' CCCAGCTAAACATGTGATT-CC-- 3' Prpf4 mmu-miR-1970 beg:2562 end:2582 pic:3' GTTTCGGATAGGGGTCACTGTGT 5'& |.|| .||||.|| &5' -----CTTAGGATAGGTGATAC- 3' Prpf4 mmu-miR-1971 beg:3132 end:3153 pic:3' AGAGTCG-GGTCGGAAATG 5'& |||.|| ||||| |.| &5' -CTCGGCTCCAGCATCTGC 3' Prpf4 mmu-miR-1983 beg:476 end:497 pic:3' TCTTTTGTACGAG-------GTCCACTC 5'& .||||. |.||||| &5' -------GTGCTTGGGACTACGGGTGA- 3' Prpf4 mmu-miR-1983 beg:145 end:161 pic:3' TCTTTTGTAC-GAGGTCCACTC 5'& || ||..|||||. &5' --------TGTCTTTAGGTGG- 3' Prpf4 mmu-miR-199b beg:2313 end:2333 pic:3' ATTGGTTACACGTC-TGATGACA 5'& .||. || |||.||| &5' -GACT----TGAATAACTGCTG- 3' Prpf4 mmu-miR-19a beg:2370 end:2388 pic:3' AGTCAAAACGTATCTAAACGTGT 5'& || || ||||||| &5' -------TGAAATGA-TTGCACA 3' Prpf4 mmu-miR-19astar beg:3547 end:3567 pic:3' CATCACGTTGATACGTTTTGAT 5'& ||| |||| .||||||. &5' -TAGAGCAAA----TAAAACTG 3' Prpf4 mmu-miR-19b beg:2370 end:2388 pic:3' AGTCAAAACGTACCTAAACGTGT 5'& || || ||||||| &5' -------TGAAATGA-TTGCACA 3' Prpf4 mmu-miR-200cstar beg:2648 end:2661 pic:3' GGTTTGTGACGACCCATTCTGC 5'& |||||.|||| &5' -----------TGGGTGAGAC- 3' Prpf4 mmu-miR-202-5p beg:3295 end:3317 pic:3' TTTCTTCATAT--ACGTATCCTT 5'& .||||||. || ||||||| &5' -GAGAAGTGAAGTTG-ATAGGAA 3' Prpf4 mmu-miR-207 beg:1344 end:1375 pic:3' CTCCCTCCTC--TCG--GTCCTCTT-CG 5'& |||||.|||| ||. |||| |. &5' GAGGGGGGAGGAAGTAGCAGGTTTTTGT 3' Prpf4 mmu-miR-20a beg:1203 end:1228 pic:3' GATGGACGTGATAT--TCGTGAAAT 5'& ||..| |||| ||||.|||. &5' -TATTTT--CTATTTCAGCATTTTG 3' Prpf4 mmu-miR-20b beg:1209 end:1228 pic:3' GATGGACGTGATAC--TCGTGAAAC 5'& |||| ||||.|||| &5' ---------CTATTTCAGCATTTTG 3' Prpf4 mmu-miR-20bstar beg:1794 end:1813 pic:3' GATCTTCACGAGTGTGACGTCA 5'& |||||| | |||||.|| &5' CTAGAA-----CTCACTGTAG- 3' Prpf4 mmu-miR-20bstar beg:2586 end:2601 pic:3' GATCTTCACGAGTGTGACGTCA 5'& || | |.|||||| &5' --------GCAC-CGCTGCAG- 3' Prpf4 mmu-miR-20bstar beg:197 end:220 pic:3' GATCTTC-ACGAGTG--TGACGTCA 5'& ||. ||| || ||||.|| &5' --AGGTTCTGC-CAAAAACTGTAG- 3' Prpf4 mmu-miR-212 beg:1918 end:1939 pic:3' ACCGGCACTGACCTCTGACAAT 5'& |||| || |.|||||| &5' ---CCGTATATGT-GGCTGTTA 3' Prpf4 mmu-miR-2134 beg:2930 end:2945 pic:3' CGTGGGGCAAAGGGTTCTG 5'& |||. | ||||||. &5' -CACTGC----CCCAAGG- 3' Prpf4 mmu-miR-2134 beg:1505 end:1522 pic:3' CGTGGGGCAAA-GGGTTCTG 5'& ..||| ||||.|| &5' -----TTGTTGGCCCAGGA- 3' Prpf4 mmu-miR-2140 beg:1419 end:1440 pic:3' TGGTGGTTCTAGACGTGGA 5'& || || ||||||.|| &5' -CCTCCTGCCTCTGCATCT 3' Prpf4 mmu-miR-2140 beg:1582 end:1600 pic:3' TGGTGGTTCTAGACGTGGA 5'& .|||| ||||||. &5' -TCACCTTG--CTGCACT- 3' Prpf4 mmu-miR-2140 beg:3136 end:3153 pic:3' TGGTGGTTCTAGACGTGGA 5'& .|. |||. |||||| &5' GCT-CCAGCATCTGC---- 3' Prpf4 mmu-miR-214 beg:998 end:1016 pic:3' TGACGGACAGACACGGACGACA 5'& |||| || ||||.|| &5' ---GCCTC-CTT--CCTGTTG- 3' Prpf4 mmu-miR-2145 beg:625 end:645 pic:3' TTGGTCC-GGGCTGGGACGA 5'& |.|| |.| ||||||. &5' AGCCTTTTCTCTACCCTGT- 3' Prpf4 mmu-miR-2146 beg:1247 end:1266 pic:3' GTGTAC-CTT-GGGAAGAGGTG 5'& | || |||||||..| &5' -----GAGATCCCCTTCTTTA- 3' Prpf4 mmu-miR-2146 beg:619 end:640 pic:3' GTGTACCT--TGG-GAAGAGGTG 5'& ||| .|| .|||||.|| &5' -----GGACAGCCTTTTCTCTAC 3' Prpf4 mmu-miR-2146 beg:1653 end:1675 pic:3' GTGTAC-CTT---GGGAAGAGGTG 5'& .|| ||| ||| |||||| &5' ---GTGTGAAATTCCC-TCTCCA- 3' Prpf4 mmu-miR-2146 beg:32 end:55 pic:3' GTGTA-CCTTGGGAAGAGGTG 5'& |||. |||.|| |.||| | &5' CACGACGGAGCCA-TTTCCTC 3' Prpf4 mmu-miR-2146 beg:138 end:156 pic:3' GTGTACCTTGGGA-AGAGGTG 5'& |||| ||| |||..| &5' -----GGAAGCCTGTCTTTA- 3' Prpf4 mmu-miR-218 beg:2262 end:2282 pic:3' TGTACCAATCTAGTTCGTGTT 5'& .|||| ||||.||||| &5' --GTGGTGC-ATCAGGCACA- 3' Prpf4 mmu-miR-218 beg:2054 end:2075 pic:3' TGTACCAATCTAGTTCGTGTT 5'& .||| .|||| .||||| &5' GCATTCG-GGATCTGGCACA- 3' Prpf4 mmu-miR-220 beg:1321 end:1341 pic:3' TTC-ACAGACTGTGACACCACC 5'& || |||. .|.||||||| &5' -AGATGTT---TATTGTGGTG- 3' Prpf4 mmu-miR-220 beg:804 end:822 pic:3' TTCACAGACTGTGACACCACC 5'& || |||||||| &5' -----TCCCTTTCTGTGGTG- 3' Prpf4 mmu-miR-220 beg:2813 end:2831 pic:3' TTCAC-AGACTGTGACACCACC 5'& || ||||. ||||||| &5' ---TGCTCTGG---TGTGGTG- 3' Prpf4 mmu-miR-221 beg:1379 end:1399 pic:3' CTTTGGGTCGTC-TGTTACATCGA 5'& .|. || .||||||| &5' -------GGTCTTACTGTGTAGCT 3' Prpf4 mmu-miR-222 beg:2421 end:2440 pic:3' TGGGTCATCGGTC--TACATCGA 5'& ||| ||.| ||||.|| &5' ---CAGGA-CCGGGCATGTGGC- 3' Prpf4 mmu-miR-222 beg:1385 end:1408 pic:3' TGGGTCATCG-GTCTACATCGA 5'& ||. ||||| ||||| |.|| &5' ACTGTGTAGCTCAGAT-TGGC- 3' Prpf4 mmu-miR-222 beg:1799 end:1824 pic:3' TGGGT--CATC-GGTCTACATCGA 5'& ||.|| |||| ||||. |.|| &5' ACTCACTGTAGACCAGGC-TGGC- 3' Prpf4 mmu-miR-223 beg:2030 end:2047 pic:3' ACCCCATAAACTG-TTTGACTGT 5'& |||. |.||||.|| &5' ---------TGATGAGACTGGCA 3' Prpf4 mmu-miR-22star beg:0 end:20 pic:3' ATTTCGAAC-GGTGACTTCTTGA 5'& || | |||| ||||.||| &5' ----GCCAGACCACGGAAGGACT 3' Prpf4 mmu-miR-23a beg:3370 end:3392 pic:3' CCTTTAGGGACCG---TTACACTA 5'& |.||.| || ||||||. &5' ---AGTCTCAGGAGGAAATGTGG- 3' Prpf4 mmu-miR-23b beg:2347 end:2366 pic:3' CCATTAGGGACCGT--TACACTA 5'& | ||| |||||| &5' ------CAGTGGAACTATGTGA- 3' Prpf4 mmu-miR-23b beg:3371 end:3392 pic:3' CCATTAGGGACCG---TTACACTA 5'& |.||.| || ||||||. &5' ---AGTCTCAGGAGGAAATGTGG- 3' Prpf4 mmu-miR-24 beg:3114 end:3136 pic:3' GACAAGGACGACTTGACTCGGT 5'& ||| || .||||||| &5' --GTTAACCCTAGGCTGAGCC- 3' Prpf4 mmu-miR-24 beg:2863 end:2884 pic:3' GACAAGGACGACTT---GACTCGGT 5'& ||| ||||| .|||||| &5' -----CCT-CTGAAACCTTGAGCC- 3' Prpf4 mmu-miR-26a beg:2306 end:2324 pic:3' TCGGATAGGACCTAA-TGAACTT 5'& ||||.| ||||||| &5' --------CTGGGTGGACTTGAA 3' Prpf4 mmu-miR-26a beg:434 end:454 pic:3' TCGGATAGGACCTAATGAACTT 5'& |||..| |.|||||| &5' ----TATTTTTAG-TGCTTGAA 3' Prpf4 mmu-miR-26a beg:669 end:688 pic:3' TCGGATAGGACCTA--ATGAACTT 5'& ||||| ||.||||| &5' --------CTGGACTGTATTTGAA 3' Prpf4 mmu-miR-26b beg:2306 end:2324 pic:3' TGGATAGGACTTAA-TGAACTT 5'& |||..| ||||||| &5' -------CTGGGTGGACTTGAA 3' Prpf4 mmu-miR-26b beg:434 end:454 pic:3' TGGATAGGACTTAATGAACTT 5'& |||..| |.|||||| &5' ---TATTTTTAG-TGCTTGAA 3' Prpf4 mmu-miR-26b beg:669 end:688 pic:3' TGGATAGGACTTAATGAACTT 5'& ||. ||| ||.||||| &5' --CTGGACTG---TATTTGAA 3' Prpf4 mmu-miR-27astar beg:2146 end:2165 pic:3' ACGAGTGTTCGTCGATTCGGGA 5'& ||.|| || | ||||||.| &5' TGTTC-CAT---G-TAAGCCTT 3' Prpf4 mmu-miR-2861 beg:1782 end:1806 pic:3' GGCGGG--CGGC-GG-TCCGGGG 5'& |||| ||.| || || |.| &5' --GCCCAGGCTGTCCTAGAACTC 3' Prpf4 mmu-miR-2861 beg:2829 end:2850 pic:3' GGCG--GGCGGCGGTCCGGGG 5'& || |.||. |||||.|| &5' --GCATCTGCTA-CAGGCTCC 3' Prpf4 mmu-miR-28star beg:3429 end:3450 pic:3' AGGTCGTCGAGTGT---TAGATCAC 5'& | ||||.| .|||.|| &5' ----GGAGCTTAAAACTGTCTGGT- 3' Prpf4 mmu-miR-290-3p beg:307 end:318 pic:3' CCCGAATTTTGATCCGCCGTGAAA 5'& ||||.||| &5' ----------------GGCATTTT 3' Prpf4 mmu-miR-290-5p beg:574 end:594 pic:3' TTTCACGGGGGTA-TCAAACTCA 5'& | |.| |||||||| &5' -----GATCTCTTGAGTTTGAG- 3' Prpf4 mmu-miR-292-3p beg:307 end:318 pic:3' TGTGAGTTTTGGACCGCCGTGAAA 5'& ||||.||| &5' ----------------GGCATTTT 3' Prpf4 mmu-miR-292-5p beg:573 end:594 pic:3' GTTTTCTCGGGGG-TCAAACTCA 5'& ||| |.|.. |||||||| &5' ----AGATCTCTTGAGTTTGAG- 3' Prpf4 mmu-miR-293star beg:573 end:594 pic:3' GTTTTACAGTGTGTCAAACTCA 5'& |.|| || |||||||| &5' --AGATCTCTTG-AGTTTGAG- 3' Prpf4 mmu-miR-294star beg:1334 end:1350 pic:3' TCTATCCCGGAGGTAAAACTCA 5'& ||. |. ||||||| &5' ------GGTGTT--TTTTGAG- 3' Prpf4 mmu-miR-294star beg:309 end:321 pic:3' TCTATCCCGGAGGTAAAACTCA 5'& ||||||||| &5' ------------CATTTTGAG- 3' Prpf4 mmu-miR-294star beg:1248 end:1274 pic:3' TCTATCCCGGAGG----TAAAACTCA 5'& ||| |||.| .||||||| &5' AGAGATCCCCTTCTTTAGTTTTGAG- 3' Prpf4 mmu-miR-295 beg:1960 end:1971 pic:3' TCTGAGTTTTCATCATCGTGAAA 5'& |.|||||| &5' --------------TGGCACTT- 3' Prpf4 mmu-miR-296-3p beg:2966 end:2990 pic:3' CCTCTCGGAGGT-GGGTTGGGAG 5'& |||||. ||.||||||| &5' --AGAGCTAAGATCCTAACCCTC 3' Prpf4 mmu-miR-298 beg:1421 end:1436 pic:3' CCCTTCTTGTCGGGA-GGAGACGG 5'& .||| ||||||| &5' -----------TCCTGCCTCTGC- 3' Prpf4 mmu-miR-298 beg:2973 end:2994 pic:3' CCCTTCTTGTC-GGGA---GGAGACGG 5'& || .||| ||||||.| &5' ---------AGATCCTAACCCTCTGTC 3' Prpf4 mmu-miR-298 beg:3202 end:3220 pic:3' CCCTTCTTGTCGGGAGGAGACGG 5'& || ..||.||||||| &5' --------CATTTCTTCTCTGCC 3' Prpf4 mmu-miR-298 beg:1831 end:1854 pic:3' CCCTTCTTGTCGGGAGGAGACGG 5'& .||| | ||. |||||||| &5' ---GAGATCCGCTTGCCTCTGCC 3' Prpf4 mmu-miR-298 beg:617 end:641 pic:3' CCCTTCTTGTCGG-GAGGAGACGG 5'& |||.|||||| .|.|||| || &5' ---AAGGACAGCCTTTTCTCTACC 3' Prpf4 mmu-miR-299star beg:1803 end:1817 pic:3' TACATACACCCTGCCATTTGGT 5'& || |||.|||| &5' -----------ACTGTAGACCA 3' Prpf4 mmu-miR-29astar beg:738 end:761 pic:3' GACTTGTGGTTTT--CTTTAGTCA 5'& ||| ||.||.|.| |||| ||| &5' CTG-ACGCCGAGAATGAAACCAG- 3' Prpf4 mmu-miR-29bstar beg:740 end:761 pic:3' ATTTGGTGGTA--TACTTTGGTCG 5'& |.||. |||||||||| &5' -----CGCCGAGAATGAAACCAG- 3' Prpf4 mmu-miR-302a beg:1955 end:1972 pic:3' AGTGGTTTTGTACCTTCGTGAAT 5'& ||||. .||||||| &5' TCACTT---------GGCACTTA 3' Prpf4 mmu-miR-302b beg:1961 end:1972 pic:3' GATGATTTTGTACCTTCGTGAAT 5'& .||||||| &5' ---------------GGCACTTA 3' Prpf4 mmu-miR-302d beg:1956 end:1972 pic:3' TGTGAGTTTGTACCTTCGTGAAT 5'& ||||. .||||||| &5' -CACTT---------GGCACTTA 3' Prpf4 mmu-miR-3099 beg:3062 end:3085 pic:3' AGGGGTTGGAGAGAGATCGGAT 5'& |||||..| || || || |. &5' TCCCCGGCATC-CTG-AGAATG 3' Prpf4 mmu-miR-3099 beg:2456 end:2478 pic:3' AGGGGT--TGGAGAGAGATCGGAT 5'& ||.. |||||||| ||||. &5' -CCTTTTTACCTCTCT---GCCTG 3' Prpf4 mmu-miR-30a beg:1668 end:1691 pic:3' GAAGGTCAGCTCCTACAAATGT 5'& ||||| ||| ||||||| &5' --TCCAGAATTGGAAGTTTACA 3' Prpf4 mmu-miR-30astar beg:2663 end:2686 pic:3' CGACGTTTGTAGGCT--GACTTTC 5'& .||| |. ||..|| |||||| &5' -TTGCTAGGATTTGATTCTGAAA- 3' Prpf4 mmu-miR-30b beg:1677 end:1691 pic:3' TCGACTCACATCCTACAAATGT 5'& ||| ||||||| &5' -----------GGAAGTTTACA 3' Prpf4 mmu-miR-30bstar beg:185 end:201 pic:3' CTGCATTTGTAGGTGTAGGGTC 5'& ||.| ||||.||| &5' ---------ATTCTCATCTCAG 3' Prpf4 mmu-miR-30c beg:1677 end:1691 pic:3' CGACTCTCACATCCTACAAATGT 5'& ||| ||||||| &5' ------------GGAAGTTTACA 3' Prpf4 mmu-miR-30c-2star beg:2505 end:2528 pic:3' TCTCATTTGTCG---GAAGAGGGTC 5'& |.|||||. |||.||||| &5' ----TGAACAGTGGACTTTTCCCA- 3' Prpf4 mmu-miR-30d beg:1669 end:1691 pic:3' GAAGGTCAGCCCCTACAAATGT 5'& ||||| ||| ||||||| &5' --TCCAGAATTGGAAGTTTACA 3' Prpf4 mmu-miR-30e beg:1313 end:1334 pic:3' GAAGGTCAGTTCCTACAAATGT 5'& |||. ||| ||||||||. &5' CTTTAT-TCA--GATGTTTAT- 3' Prpf4 mmu-miR-30e beg:1668 end:1691 pic:3' GAAGGTCAGTTCCTACAAATGT 5'& ||||| ||| ||||||| &5' --TCCAGAATTGGAAGTTTACA 3' Prpf4 mmu-miR-30estar beg:325 end:349 pic:3' CGACATT--TGTAGG--CTGACTTTC 5'& |||||| |.|||| ||||| &5' -CTGTAAGTATATCCCTGACTG---- 3' Prpf4 mmu-miR-30estar beg:1156 end:1173 pic:3' CGACATTTGTAGGCTGACTTTC 5'& ||| |. .||||.|| &5' -------ACA-CTTGCTGAGAG 3' Prpf4 mmu-miR-322 beg:403 end:424 pic:3' AGGTTTTGTACTTA---ACGACGAC 5'& .|||.| |||||||| &5' -------TATGGAAATGTGCTGCTG 3' Prpf4 mmu-miR-322star beg:69 end:90 pic:3' CACAACGTCGCGA-AGTACAAA 5'& |||. |. || |||||||| &5' ---TTGT-GTTCTATCATGTTT 3' Prpf4 mmu-miR-324-3p beg:513 end:534 pic:3' TCGTCGTGGACC---CCGTCACC 5'& .| |||| |||||||| &5' ---GGA--CTGGCTAGGCAGTGG 3' Prpf4 mmu-miR-327 beg:2701 end:2720 pic:3' TAGG-AGTACGGGGAGTTCA 5'& || |.| ||||||.| &5' --CCATTAAA-CCCTCAGG- 3' Prpf4 mmu-miR-327 beg:371 end:398 pic:3' TAGGAGT-----ACGGGGAGTTCA 5'& |||||| |||||.||.||| &5' ATCCTCCTGTCCTGCCCTTCGAGT 3' Prpf4 mmu-miR-330 beg:1818 end:1838 pic:3' CGGATTCTGT-GTCCGGGTCTCT 5'& |.| || |.|||||| &5' ------GGCCTCAAACTCAGAGA 3' Prpf4 mmu-miR-338-3p beg:92 end:113 pic:3' GTTGTTTTA-GTGACTACGACCT 5'& |||| ||. .||.|||| &5' ---CAAATACCAT--GTGTTGGA 3' Prpf4 mmu-miR-33 beg:2631 end:2649 pic:3' ACGTTACGTTGATGTTACGTG 5'& | |.||| .| |||||.| &5' -GAAGTGCTGC--CAATGTA- 3' Prpf4 mmu-miR-33star beg:2127 end:2152 pic:3' CACTACGTGA---C-ACCTTTGTAAC 5'& || |||.| | ||||||..|| &5' --GA-GCATTCGAGTTGGAAATGTT- 3' Prpf4 mmu-miR-33star beg:3531 end:3547 pic:3' CACTACGTGACACCTTTGTAAC 5'& |||||||||.||| &5' --------CTGTGGAAATATT- 3' Prpf4 mmu-miR-342-3p beg:1762 end:1784 pic:3' TGCCCACG-CTAAAGACACACTCT 5'& ||| || |.||||| ||||| &5' --GGG-GCTGGTTTCTCTGTGA-- 3' Prpf4 mmu-miR-342-5p beg:1582 end:1602 pic:3' GAGTTAGTGTCTAT-CGTGGGGA 5'& |||| ||||.|| &5' -----TCACCTTGCTGCACTCC- 3' Prpf4 mmu-miR-343 beg:1335 end:1356 pic:3' AGACC-CGTGT-ACTTCCCTCT 5'& ||| |. |||.|||.|| &5' --TGGTGTTTTTTGAGGGGGGA 3' Prpf4 mmu-miR-346 beg:557 end:580 pic:3' TCTCCGTCCGTGAGCCCGTCTGT 5'& .||||||| ||||||||. &5' GGAGGCAGAGG--CGGGCAGAT- 3' Prpf4 mmu-miR-3470a beg:592 end:613 pic:3' GGTCGGACCAGATGTTTCACT 5'& |||||||||||||||.|| &5' CCAGCCTGGTCTACAGAG--- 3' Prpf4 mmu-miR-3470b beg:592 end:613 pic:3' GGTCGGACCAGATGTCTCACT 5'& |||||||||||||||||| &5' CCAGCCTGGTCTACAGAG--- 3' Prpf4 mmu-miR-3471 beg:100 end:122 pic:3' TTACGGAATGTCAACCTAGAGT 5'& |||. ||. | ||||||.|. &5' -ATGTGTTGGA-TTGGATTTT- 3' Prpf4 mmu-miR-3472 beg:1002 end:1022 pic:3' CCAAGGAAGGTCGAAGACCGATAAT 5'& ||||||| .|||.|||| &5' ---TCCTTCCTG---TTGGTTATT- 3' Prpf4 mmu-miR-3473 beg:3124 end:3145 pic:3' CCGACTCGGTAGA-GAGGT 5'& ||||||||| || ||||| &5' GGCTGAGCC-TCGGCTCCA 3' Prpf4 mmu-miR-3473 beg:444 end:466 pic:3' CCG-ACTCGGTA-GAGAGGT 5'& || ||| |. |||||.| &5' -GCTTGAACTTGGCTCTCTA 3' Prpf4 mmu-miR-3475 beg:1584 end:1605 pic:3' AAGTTTGGTAC-ACG-GAGGTCT 5'& ||| || ||| ||||||| &5' -----ACCTTGCTGCACTCCAGA 3' Prpf4 mmu-miR-3475 beg:1654 end:1677 pic:3' AAGTTTGGTACAC--------GGAGGTCT 5'& .|||| .||||||| &5' --------GTGTGAAATTCCCTCTCCAGA 3' Prpf4 mmu-miR-34a beg:2623 end:2644 pic:3' TGTTGGTCGA-TTCTGTGACGGT 5'& ||||. ||| ..|||||| &5' ----CCAGTGGAAG-TGCTGCCA 3' Prpf4 mmu-miR-34a beg:2231 end:2250 pic:3' TGTTGGTCGATTCTGTGACGGT 5'& .|| .| |||||.|| &5' ------GGCAGAACCACTGTCA 3' Prpf4 mmu-miR-361 beg:900 end:921 pic:3' CATGGGGACCTCTAAGACTATT 5'& |. |..|| || |.||||| &5' -TGGCTTTGAAG--TTTGATA- 3' Prpf4 mmu-miR-370 beg:2776 end:2800 pic:3' TGGTCCAAGGTGG-GGTCGTCCG 5'& |||| |||.|.| ||||| || &5' -CCAGCTTCTATCTCCAGCT-GC 3' Prpf4 mmu-miR-375 beg:170 end:188 pic:3' AGTGCGCTCGGCTTGCTTGTTT 5'& ||.| |.. ||||||| &5' ---CGTG-GTTA---GAACAAA 3' Prpf4 mmu-miR-375 beg:2493 end:2514 pic:3' AGTGCGCTCGGCTTGCTTGTTT 5'& |||| .|| |. |.|||||. &5' TCAC-TGA-CTTTATGAACAG- 3' Prpf4 mmu-miR-376b beg:1762 end:1784 pic:3' TTCACCTA--CAAGGAGATACTA 5'& .|| ||. |||.||||.||| &5' GAG-GGGCTGGTTTCTCTGTGA- 3' Prpf4 mmu-miR-376bstar beg:938 end:956 pic:3' ATTGGTATCTTCCTTATAGGTG 5'& |..|||| .|||||| &5' TGGCCATT------GTATCCA- 3' Prpf4 mmu-miR-377 beg:1641 end:1662 pic:3' TGTTTTCAACGGAAA-CACACTA 5'& .||.||||. | |||||| &5' --GAAGGTTGTGTATAGTGTGA- 3' Prpf4 mmu-miR-378 beg:1303 end:1326 pic:3' GGAAGAC--TGAGGTTCAGGTCA 5'& |.||||| |||..| |.||| &5' CTTTCTGTTACTTTA--TTCAG- 3' Prpf4 mmu-miR-382 beg:1474 end:1497 pic:3' GCTTAGGTG-GTGCTTGTTGAAG 5'& ||||| ||| ||||.|||| &5' ---ATCCAGACACTAACAGCTTC 3' Prpf4 mmu-miR-382star beg:2470 end:2485 pic:3' TTTTTCACAACAGGCACTTACT 5'& || |.|||.||| &5' ---------TGCCTGTGGATG- 3' Prpf4 mmu-miR-384-3p beg:3298 end:3317 pic:3' TAACACTTGTTAAAGATCCTTA 5'& ||||| .|| |||||| &5' ---GTGAA--GTTGATAGGAA- 3' Prpf4 mmu-miR-412 beg:2566 end:2579 pic:3' GCCGATCACCTGGTCCACTT 5'& ||| .|||||| &5' --------GGA-TAGGTGA- 3' Prpf4 mmu-miR-412 beg:3349 end:3371 pic:3' GCCGATCACCTG-GTCCACTT 5'& || | |||| ||||||| &5' -GGTCAATGGAGACAGGTGA- 3' Prpf4 mmu-miR-423-5p beg:374 end:394 pic:3' TTTCAGAGCGAGA-GACGGGGAGT 5'& ||| || | ||||||.|| &5' -----CTC-CTGTCCTGCCCTTC- 3' Prpf4 mmu-miR-432 beg:3093 end:3118 pic:3' GACGGGTGACTAGA--TGAGGTTCT 5'& |. | || ||||||||. &5' ---CTGAAGGAAAGGGACTCCAAGG 3' Prpf4 mmu-miR-433 beg:1713 end:1735 pic:3' TGTGGCTCCTCGGGTAGTACTA 5'& .|. |. ||||||| &5' --GCTCTTCTGTAGATCATGA- 3' Prpf4 mmu-miR-433 beg:918 end:931 pic:3' TGTGGCTCCTCGGGTAGTACTA 5'& .|| |||||| &5' -----------TCCTTCATGA- 3' Prpf4 mmu-miR-448 beg:1023 end:1042 pic:3' TACCCTGTA-GGATGTATACGTT 5'& ||| ..| ||| ||||.| &5' --GGG-TGTACCT---TATGTA- 3' Prpf4 mmu-miR-449b beg:2231 end:2249 pic:3' CGGTCGATTGTTGTGACGGA 5'& .|| .| |||||.| &5' ---GGCAGAAC-CACTGTC- 3' Prpf4 mmu-miR-449c beg:2919 end:2940 pic:3' GGTCGATCGTTAC-----GTGACGGA 5'& | .|| ||||||| &5' -------GTGGTGACTAACACTGCC- 3' Prpf4 mmu-miR-449c beg:2230 end:2249 pic:3' GGTCGATCGTTAC-GTGACGGA 5'& |.|||. |||||.| &5' -----TGGCAGAACCACTGTC- 3' Prpf4 mmu-miR-450a-3p beg:35 end:57 pic:3' TACTTAC-GTTTCGT---AGGGGTTA 5'& | |..||| |||.||| &5' ------GACGGAGCCATTTCCTCAA- 3' Prpf4 mmu-miR-450a-3p beg:2593 end:2616 pic:3' TACTTACGTTTC---GTAGGGGTTA 5'& ||||.. |.||||.||| &5' -----TGCAGGCCTCCGTCCCTAAT 3' Prpf4 mmu-miR-450a-3p beg:3094 end:3116 pic:3' TACTTACGTTTCGTAGGGGTTA 5'& |||| | |||| . |.|||| &5' -TGAA-GGAAAGGGACTCCAA- 3' Prpf4 mmu-miR-450b-5p beg:1794 end:1814 pic:3' ATAAGTCCTTGTATGACGTTTT 5'& | |||| ||||.|.| &5' ----CTAGAACTCACTGTAGA- 3' Prpf4 mmu-miR-452 beg:487 end:508 pic:3' CAGAGTCAAAGGAGACGTTTGT 5'& |.| .|| ||||.|| &5' ----CGGGTGATTCAGCAAGCA 3' Prpf4 mmu-miR-452 beg:2581 end:2603 pic:3' CAGAGTCAAAGGAGACGTTTGT 5'& |||.|| || |||||..| &5' -TCTTAGGCACCGCTGCAGGC- 3' Prpf4 mmu-miR-455star beg:2262 end:2283 pic:3' GCTACATCAGGTT-TCCGTGTAT 5'& ||.|| || |||||||| &5' ----GTGGTGCATCAGGCACAT- 3' Prpf4 mmu-miR-465a-3p beg:2799 end:2815 pic:3' AGATGAATCTTTCCGGGACTAG 5'& |||.|| .||||.| &5' TCTGCT--------TCCTGGT- 3' Prpf4 mmu-miR-465a-5p beg:1842 end:1862 pic:3' AGTGTAGTCACGGTAAGATTTAT 5'& | | || |||| ||||||.| &5' TTGCCTC--TGCC-TTCTAAGT- 3' Prpf4 mmu-miR-465b-3p beg:2799 end:2815 pic:3' AGATGAATCTTTCCGGGACTAG 5'& |||.|| .||||.| &5' TCTGCT--------TCCTGGT- 3' Prpf4 mmu-miR-465c-5p beg:1844 end:1862 pic:3' GTCTAGTCGCGGTAAGATTTAT 5'& | .||| ||||||.| &5' -----CTCTGCC-TTCTAAGT- 3' Prpf4 mmu-miR-466g beg:978 end:995 pic:3' ACACACACGTAC-ACAGACATA 5'& |||| |||||||.| &5' --------CATGATGTCTGTGT 3' Prpf4 mmu-miR-467c beg:1113 end:1135 pic:3' GTGTATATGTACGTGCGTGAAT 5'& .|.||||| || ||| ||| &5' TATATATAAATACACACAC--- 3' Prpf4 mmu-miR-467c beg:1131 end:1155 pic:3' GTGTAT--ATGTACGTGCGTGAAT 5'& |||||| ||||| ||| ||| &5' CACATACATACATACACACAC--- 3' Prpf4 mmu-miR-467e beg:1148 end:1166 pic:3' TGTATATGTACGAGTGTGAATA 5'& ||| | |||||||. &5' ------ACACACACACACTTG- 3' Prpf4 mmu-miR-467h beg:1132 end:1155 pic:3' TGTAT--ATGTACGTGTGTGAATA 5'& ||||| ||||| ||||||| &5' ACATACATACATACACACAC---- 3' Prpf4 mmu-miR-467h beg:1148 end:1166 pic:3' TGTATATGTACGTGTGTGAATA 5'& ||| |||||||||. &5' ------ACACACACACACTTG- 3' Prpf4 mmu-miR-467h beg:1114 end:1135 pic:3' TGTATATGTACGTGTGTGAATA 5'& |.||||| || ||||||| &5' ATATATAAATACACACAC---- 3' Prpf4 mmu-miR-469 beg:950 end:969 pic:3' CCTGTGGTTCTAGTTACTTTCTCCGT 5'& || ||||. ||||.||. &5' -----CC-AGATTC---AAAGGGGT- 3' Prpf4 mmu-miR-470 beg:605 end:623 pic:3' TGAGTGGTCACGGTCAGGTTCTT 5'& ||| || |||.||||.| &5' ------CAGAGCAAGTTCAAGGA 3' Prpf4 mmu-miR-484 beg:2422 end:2444 pic:3' TAGCCCTCCCCTG-AC-TCGGACT 5'& ||| ||.| || .|||||| &5' ----GGACCGGGCATGTGGCCTGA 3' Prpf4 mmu-miR-485 beg:2766 end:2788 pic:3' CTTAAGTAGTGCCGGTCGGAGA 5'& |.||. .| |||||.||| &5' -AGTTTTTAGC--CCAGCTTCT 3' Prpf4 mmu-miR-485 beg:984 end:1006 pic:3' CTTAAGTAGT----GCCGGTCGGAGA 5'& .|| .| ||||||| &5' ------GTCTGTGTTGTACAGCCTC- 3' Prpf4 mmu-miR-485 beg:2450 end:2464 pic:3' CTTAAGTAGTGCCGGTCGGAGA 5'& ||.||||||.| &5' -----------GGTCAGCCTTT 3' Prpf4 mmu-miR-485 beg:612 end:632 pic:3' CTTAAGTAGTGCCGGTCGGAGA 5'& |.|||| || ||||||.| &5' -AGTTCAA---GGACAGCCTTT 3' Prpf4 mmu-miR-488 beg:227 end:247 pic:3' CTGGTTCTTTGTCGGAAAGTT 5'& |||. |||| |.|||||. &5' GACTC---AACA-CTTTTCAG 3' Prpf4 mmu-miR-488 beg:2283 end:2303 pic:3' CTGGTTCTTT-GTCGGAAAGTT 5'& .|||| || ||||.|| &5' ----GAGAATTCATTCTTTTAA 3' Prpf4 mmu-miR-488star beg:2169 end:2185 pic:3' AACTCTCACGATAATAGACCC 5'& || |.|||||| &5' --------GCAAGTGTCTGGG 3' Prpf4 mmu-miR-493 beg:3385 end:3401 pic:3' GGACCGTGTGTCATCC-TGGAAGT 5'& ||.|| |||||.| &5' -----------GTGGGTACCTTTA 3' Prpf4 mmu-miR-497 beg:401 end:424 pic:3' ATGTTTGGTGTC---ACACGACGAC 5'& |..|..| |||||||||| &5' -----ATTATGGAAATGTGCTGCTG 3' Prpf4 mmu-miR-499 beg:1370 end:1389 pic:3' TTTGTAGTGACGTTCAGAATT 5'& .| || ..|||||| &5' ----GTGACAAAGGGTCTTA- 3' Prpf4 mmu-miR-499 beg:2523 end:2542 pic:3' TTTGTAGTGACGTT-CAGAATT 5'& |||| | |||||.| &5' ------CACTCCTGTGTCTTGA 3' Prpf4 mmu-miR-500 beg:2252 end:2274 pic:3' ACTTGGGAACGGGT--CCACGTAA 5'& |||||| |.|| ||||||| &5' --AACCCTACCTCAGTGGTGCAT- 3' Prpf4 mmu-miR-501-3p beg:2253 end:2274 pic:3' GTTTAGGAACGGG-C-CCACGTAA 5'& ||| |.| | ||||||| &5' -----CCTACCTCAGTGGTGCAT- 3' Prpf4 mmu-miR-503star beg:520 end:544 pic:3' GGTCCGTCACCTTTGT-TATGAG 5'& |.||||||||| .|. ||.| &5' CTAGGCAGTGGTGGCGCATGC-- 3' Prpf4 mmu-miR-504 beg:3147 end:3171 pic:3' CTATCTCACG------TCTGGTCCCAGA 5'& ||| .|.||||||||| &5' -------TGCTTCCTTGGGCCAGGGTCT 3' Prpf4 mmu-miR-540-3p beg:925 end:946 pic:3' GGTCCTAGCTGG------AGACTGGA 5'& .||| ||||.|| &5' -------TGACAAAACAATCTGGCC- 3' Prpf4 mmu-miR-542-3p beg:1303 end:1317 pic:3' AAAGTCAATAGTTAGACAGTGT 5'& | |||||.|| &5' ----------CTTTCTGTTAC- 3' Prpf4 mmu-miR-546 beg:1462 end:1472 pic:3' CTGAGGCACGGTGGTA 5'& ||||.|| &5' --------GCCATCA- 3' Prpf4 mmu-miR-582-5p beg:198 end:219 pic:3' TCATTGACCAACTTG----TTGACAT 5'& |||| .| ||||||| &5' -------GGTTCTGCCAAAAACTGTA 3' Prpf4 mmu-miR-599 beg:220 end:240 pic:3' CAAAC-TATTTGAC-TGTGTT 5'& ||| |||.||| |||| &5' --TTGTATAGACTCAACAC-- 3' Prpf4 mmu-miR-615-5p beg:3092 end:3114 pic:3' CTAGGC-TCGTGGCCCCTGGGGG 5'& ||.| || | |||||.|| &5' --TCTGAAGGAAA-GGGACTCC- 3' Prpf4 mmu-miR-652 beg:2693 end:2709 pic:3' GTGTTGGGATCACCGCGGTAA 5'& || || |.|||||| &5' -------CT-GTTGTGCCATT 3' Prpf4 mmu-miR-654-5p beg:1154 end:1186 pic:3' TGTGTACAAGACG-TC------GAATGGT 5'& ||||| ||| || |||||.| &5' ACACACTTGCTGAGAGTAAAATCTTACTA 3' Prpf4 mmu-miR-665 beg:2797 end:2815 pic:3' TCCCTGGAGTCGGAGGACCA 5'& |||| ||.||||||| &5' -----CCTCTGCTTCCTGGT 3' Prpf4 mmu-miR-668 beg:384 end:401 pic:3' CCATCACCCGGCTCGGCTCACTGT 5'& ||| .|||||||. &5' --------GCCCT-TCGAGTGAT- 3' Prpf4 mmu-miR-669e beg:491 end:513 pic:3' TACTT-GTACGTGTGTGTTCTGT 5'& .||| || ||| .|||||.| &5' GTGATTCA-GCAA--GCAAGATA 3' Prpf4 mmu-miR-669g beg:2627 end:2649 pic:3' TAGTACAGTTGTGTATGTTACGT 5'& .|| |. | |||||.| &5' ---GTGGAAGTGCTGCCAATGTA 3' Prpf4 mmu-miR-669g beg:3321 end:3340 pic:3' TAGTACAGTTGTGTATGTTACGT 5'& ||. ||| ||.|||| &5' -----GTT--CACTATCAGTGCA 3' Prpf4 mmu-miR-669j beg:1911 end:1931 pic:3' ACAAACGTACACT-CATATACGT 5'& |.|| |||||||. &5' -----GTATATTCCGTATATGT- 3' Prpf4 mmu-miR-669j beg:466 end:481 pic:3' ACAAACGTACACTCATATACGT 5'& |||| ||||.||| &5' ------CATG---GTATGTGC- 3' Prpf4 mmu-miR-669l beg:1132 end:1159 pic:3' TGTAT--ATGTACGTGTGTGT-TGA 5'& ||||| ||||| |||||||| || &5' ACATACATACATACACACACACAC- 3' Prpf4 mmu-miR-669o beg:1116 end:1141 pic:3' TGTATTTGTACGTGTGTGT-TGAT 5'& |.|||||.| |||||||| || &5' ATATAAATACACACACACATAC-- 3' Prpf4 mmu-miR-671-5p beg:2790 end:2812 pic:3' GAGGTCG--GGGAGGTCCCGAAGGA 5'& |||||| |||||. ||||||| &5' -TCCAGCTGCCCTCT---GCTTCCT 3' Prpf4 mmu-miR-672 beg:1147 end:1168 pic:3' AGTGTGTGTCATGTGGTTGGAGT 5'& |||||||| ||||. .|. &5' -CACACACAC-ACACTTGCT--- 3' Prpf4 mmu-miR-673-3p beg:341 end:356 pic:3' CCACGTGTCTTGAGTCGGGGCCT 5'& .||| |.|||||| &5' ---------GACT--GTCCCGGA 3' Prpf4 mmu-miR-674 beg:228 end:250 pic:3' ATGTGGTGAGG---GTAGAGTCACG 5'& |||| | |.||||||| &5' ------ACTCAACACTTTTCAGTGC 3' Prpf4 mmu-miR-676 beg:1392 end:1417 pic:3' TCGAGTTG--TTGGAGTC-CTGCC 5'& ||||||. ..|||||| | | &5' AGCTCAGATTGGCCTCAGAGTC-- 3' Prpf4 mmu-miR-676 beg:226 end:250 pic:3' TC-GAGTTGTT-GGAGTCCTGCC 5'& || ||||||| ..|||| | &5' AGACTCAACACTTTTCAGTGC-- 3' Prpf4 mmu-miR-677 beg:2492 end:2503 pic:3' AGTCTTCGATTAGTAGTGACTT 5'& |||||||| &5' -------------ATCACTGA- 3' Prpf4 mmu-miR-682 beg:755 end:776 pic:3' GTCTGAAGTGACACTGACGTC 5'& |||| ||. |||||||| &5' CAGAGC-CATA--GACTGCAG 3' Prpf4 mmu-miR-682 beg:845 end:863 pic:3' GTCTGAAGTGACACTGACGTC 5'& .||| ||| |||||| &5' -GGAC-TCAGA---ACTGCA- 3' Prpf4 mmu-miR-682 beg:1795 end:1818 pic:3' GTCTGAAGTGACA-CTGACGTC 5'& .||| ||||||| ||| ||| &5' TAGAACTCACTGTAGAC--CAG 3' Prpf4 mmu-miR-684 beg:1508 end:1526 pic:3' AACTGAACTTCCCTTTTGA 5'& |||.| |||.||| &5' TTGGCCCA---GGAGAAC- 3' Prpf4 mmu-miR-684 beg:1336 end:1357 pic:3' AACT--GAACTTCCCTTTTGA 5'& || .||||.||| |. &5' -TGTTTTTTGAGGGGGGAG-- 3' Prpf4 mmu-miR-686 beg:547 end:567 pic:3' AGAAGTGG-CAGACCCTTCGTTA 5'& || || | |||||.|||. &5' ---TC-CCAGCTTGGGAGGCAG- 3' Prpf4 mmu-miR-686 beg:2170 end:2193 pic:3' AGAAGTG-GCAGA-CCCTTCGTTA 5'& || .|||| ||||||.||| &5' ----CAAGTGTCTGGGGAAGTAAT 3' Prpf4 mmu-miR-693-5p beg:1919 end:1936 pic:3' CTTTTGAAAGCC--TACACCGAC 5'& || ||||||||| &5' ---------CGTATATGTGGCTG 3' Prpf4 mmu-miR-694 beg:426 end:446 pic:3' GAAGTCCGTT---GTAAAAGTC 5'& ||||. .|||||.|| &5' -----GGCAGTTGTATTTTTAG 3' Prpf4 mmu-miR-698 beg:3006 end:3023 pic:3' TCCCTTCCTTTGCTCTTAC 5'& ||||||||. |||| &5' --GGAAGGAAGA-AGAA-- 3' Prpf4 mmu-miR-704 beg:693 end:713 pic:3' GATCCTCGT--CTCGTGTACAGA 5'& ||. ||| ||||||| &5' -----AGTTATGAGGACATGTC- 3' Prpf4 mmu-miR-706 beg:1365 end:1388 pic:3' AAAAAACTCTG--TCCCAAAGAGA 5'& |||||| ||| |||| |||. &5' -TTTTTGTGACAAAGGG--TCTT- 3' Prpf4 mmu-miR-708 beg:714 end:737 pic:3' GGGTCGATCTAACATTCGAGGAA 5'& ||| .|. | |||||||| &5' -CCATTTGTG--GCGAGCTCCTT 3' Prpf4 mmu-miR-709 beg:372 end:394 pic:3' AGGAGGACGGAGAC-GGAGG 5'& ||||||||.| ||| |||.| &5' TCCTCCTGTC-CTGCCCTTC 3' Prpf4 mmu-miR-709 beg:1835 end:1857 pic:3' AGGAGGACGGAGACGGAGG 5'& ||| |.|||||||||||.| &5' TCCGCTTGCCTCTGCCTTC 3' Prpf4 mmu-miR-709 beg:237 end:259 pic:3' AGGAGG-ACGGAGACGGAGG 5'& |..|| |||| |||||||| &5' TTTTCAGTGCC-CTGCCTCC 3' Prpf4 mmu-miR-709 beg:2789 end:2811 pic:3' AGGAGGAC-GGAGACGGAGG 5'& ||| ||| |||||||.||| &5' TCCAGCTGCCCTCTGCTTCC 3' Prpf4 mmu-miR-709 beg:2976 end:2996 pic:3' AGGAGGACGGAGACGGAGG 5'& |||| ||||||.||| &5' TCCTAAC-CCTCTGTCTC- 3' Prpf4 mmu-miR-709 beg:3206 end:3228 pic:3' AGGAG-GACGGAGACGGAGG 5'& ||.|| ||||| |||.| || &5' TCTTCTCTGCCCCTGTC-CC 3' Prpf4 mmu-miR-711 beg:1533 end:1554 pic:3' GAATGTAGAGAGGGGCCCAGGG 5'& || | | .|.||||.|| &5' ----CAGGTGTGTCTGGGTTCC 3' Prpf4 mmu-miR-713 beg:414 end:439 pic:3' CGAC-ACACGGAA-GTC-ACGT 5'& |||| ||||||| ||| ||.| &5' GCTGCTGTGCCTGGCAGTTGTA 3' Prpf4 mmu-miR-713 beg:237 end:250 pic:3' CGACACACGGAAGTCACGT 5'& ..|||||||| &5' --------TTTTCAGTGC- 3' Prpf4 mmu-miR-713 beg:3321 end:3340 pic:3' CGACACACGGAAGTCACGT 5'& || |. |||||||| &5' ---GTTCACTATCAGTGCA 3' Prpf4 mmu-miR-717 beg:1526 end:1550 pic:3' TCTCTTCCATAGAG-----ACAGACTC 5'& |||| |.|| ||||||.| &5' -----AGGT-TTTCAGGTGTGTCTGGG 3' Prpf4 mmu-miR-721 beg:802 end:827 pic:3' AAGGGGGAAA--ATTAAC-GTGAC 5'& ||.|||.|| |..| ||| &5' TTTCCCTTTCTGTGGTGTTCAC-- 3' Prpf4 mmu-miR-721 beg:891 end:911 pic:3' AAGGGGGAAAATTAACGTGAC 5'& ||..||||||. || .|| &5' -TCTTCCTTTTG---GCTTTG 3' Prpf4 mmu-miR-742 beg:888 end:910 pic:3' AAATGGGTCGTACC-ACCGAAAG 5'& .||. ||||||| &5' ---GCCTCTTCCTTTTGGCTTT- 3' Prpf4 mmu-miR-743b-5p beg:2074 end:2096 pic:3' ACTACCTGTGGTCAGACTTGT 5'& ||| | | | |||||||| &5' TGA-GTTCTCTGGTCTGAAC- 3' Prpf4 mmu-miR-744 beg:2039 end:2059 pic:3' ACGACAATCGGGA-TCGGGGCGT 5'& |.|| |||||.||| &5' ------TGGCATAGAGCCCTGCA 3' Prpf4 mmu-miR-744 beg:1696 end:1718 pic:3' ACGACAATCGGGATCGGGGCGT 5'& ||| |..|| ||||.|| &5' -GCTTCCTGTTCT-GCCCTGC- 3' Prpf4 mmu-miR-758 beg:2261 end:2282 pic:3' ATCACC---TGGTCCAGTGTTT 5'& ||||| |.|||| |||| &5' -AGTGGTGCATCAGG-CACA-- 3' Prpf4 mmu-miR-759 beg:286 end:319 pic:3' CAGTTTTAACAAA----------CGTGAGACG 5'& ||| |||||| |||.|.|| &5' -TCATTTTTGTTTTTTTTATTTGGCATTTTG- 3' Prpf4 mmu-miR-760 beg:1394 end:1417 pic:3' AGGGGTGT--CTGG-GTCTCGGC 5'& |.|| | |.|| |||||.| &5' --CTCAGATTGGCCTCAGAGTC- 3' Prpf4 mmu-miR-760 beg:742 end:765 pic:3' AGGGGTGTCTG-----GGTCTCGGC 5'& | ||. ||| |||||||| &5' -CGCCG-AGAATGAAACCAGAGCC- 3' Prpf4 mmu-miR-761 beg:1155 end:1169 pic:3' ACACAGTCAAAGTG-GGACGACG 5'& ||| |.||||| &5' -----------CACACTTGCTG- 3' Prpf4 mmu-miR-763 beg:2324 end:2346 pic:3' CGGTGACCAAGAA-GGGTCGACC 5'& | ||| || |||||||| &5' -CTGCTGAA--TTACCCAGCTG- 3' Prpf4 mmu-miR-763 beg:2774 end:2799 pic:3' CGGTGACCAAGA-AG-GGTCGACC 5'& ||| | | |||| || ||||||| &5' GCC-CAGCTTCTATCTCCAGCTG- 3' Prpf4 mmu-miR-764-5p beg:2819 end:2837 pic:3' TCCTCCTGTACACTCGTGG 5'& || |||||||.| &5' ----GGTGTGGTGAGCATC 3' Prpf4 mmu-miR-764-5p beg:3375 end:3397 pic:3' TCCTCCTGTACACTCGTGG 5'& ||||||| |||||.|.||| &5' AGGAGGAAATGTGGGTACC 3' Prpf4 mmu-miR-764-5p beg:699 end:716 pic:3' TCCTCCTGTACACTCGTGG 5'& |||||||||| |||| &5' --GAGGACATGT---CACC 3' Prpf4 mmu-miR-767 beg:2258 end:2273 pic:3' ACGAGTCTGTTGGTACCACGT 5'& ||||| ||||||| &5' --CTCAG-------TGGTGCA 3' Prpf4 mmu-miR-7b beg:3395 end:3411 pic:3' TGTTGTTTTAGTGTTCAGAAGGT 5'& |.|| |||.|||.| &5' ---------TTAC-AGTTTTCTA 3' Prpf4 mmu-miR-804 beg:1786 end:1808 pic:3' AGGTCC-ACTCCTTGTTGAGTGT 5'& ||||| || | ||||||| &5' -CCAGGCTGTCCTAGAACTCAC- 3' Prpf4 mmu-miR-871 beg:2219 end:2234 pic:3' GTACTGACCGTGATTAGACTTAT 5'& ||| |||||||. &5' ------TGGAT----TCTGAATG 3' Prpf4 mmu-miR-872 beg:2730 end:2752 pic:3' GGACT-TGATTGTTCATTGGAA 5'& |||. || ||.|||| ||| &5' -CTGGTACAAATAAGTCACC-- 3' Prpf4 mmu-miR-872 beg:1476 end:1500 pic:3' GGACT-TGATTGTTCATTGGAA 5'& || || |||||||. |.|| &5' CCAGACACTAACAGCTT-CTTT 3' Prpf4 mmu-miR-875-3p beg:426 end:446 pic:3' GTATCGGAGTCATAAAAGTCC 5'& |.|| |||||||.|| &5' --TGGCAGTTGTATTTTTAG- 3' Prpf4 mmu-miR-875-5p beg:1442 end:1464 pic:3' GTGGACTATTTTGAC-TCCATAT 5'& |||| || || ||||.|| &5' --CCTGT--AAGTTGTAGGTGTA 3' Prpf4 mmu-miR-876-5p beg:1646 end:1667 pic:3' ATCACTAAGTGTCT--CTTTAGGT 5'& ||| .|.|| |||||.| &5' --GTG---TATAGTGTGAAATTC- 3' Prpf4 mmu-miR-876-5p beg:598 end:620 pic:3' ATCACTAAGTGTCTC-TTTAGGT 5'& ||.| .|||||| ||.|.|| &5' ---TGGTCTACAGAGCAAGTTCA 3' Prpf4 mmu-miR-876-5p beg:1241 end:1257 pic:3' ATCACTAAGTGTCTCTTTAGGT 5'& || || |||.|||| &5' -------TC-CAAAGAGATCC- 3' Prpf4 mmu-miR-877 beg:1705 end:1725 pic:3' GGGACGCGGTAGAGGAGATG 5'& .|||| || |||.|||. &5' -TCTGC-CCTGCTCTTCTG- 3' Prpf4 mmu-miR-877 beg:624 end:640 pic:3' GGGACGCGGTAGAGGAGATG 5'& ||| |.|.|||||| &5' ------GCC-TTTTCTCTAC 3' Prpf4 mmu-miR-877star beg:699 end:709 pic:3' ACCCTCCTCCCTCTTCTCCTGT 5'& ||||||| &5' ---------------GAGGACA 3' Prpf4 mmu-miR-879 beg:873 end:897 pic:3' CCGAATCTCGATA----TTCGGAGA 5'& ||||||| .||||||| &5' ---TTAGAGCCAAGTTAGAGCCTCT 3' Prpf4 mmu-miR-881 beg:2371 end:2390 pic:3' AGATAAGTCTTTTC---TGTGTCAA 5'& |||| .|||||| &5' --------GAAATGATTGCACAGT- 3' Prpf4 mmu-miR-881star beg:1759 end:1781 pic:3' TCTACACTGACAATAGAGAGAC 5'& .|| |.||| .|.|||||| &5' GGAGG-GGCTG--GTTTCTCTG 3' Prpf4 mmu-miR-9 beg:741 end:763 pic:3' AGTATGTCGA-TCTA---TTGGTTTCT 5'& || ||| |||||.|| &5' -------GCCGAGAATGAAACCAGAG- 3' Prpf4 mmu-miR-92a beg:3320 end:3342 pic:3' GTCCGGCCC-TGTTCACGTTAT 5'& |||.. |. |||||||| &5' -AGGTTCACTATCAGTGCAAT- 3' Prpf4 mmu-miR-93 beg:1209 end:1228 pic:3' GATGGACGTGCTTGTCGTGAAAC 5'& |||..| |||||.|||| &5' CTATTT-------CAGCATTTTG 3' Prpf4 mmu-miR-93star beg:2537 end:2557 pic:3' GCCCTTCACGATCGAGTCGTCA 5'& || || ||||.||||| &5' ---GATTTGG-AGCTTAGCAG- 3' Prpf4 mmu-miR-96 beg:2625 end:2645 pic:3' TCGTTTTTACACGATCACGGTTT 5'& || .|| |||| |||||| &5' AGTGGAA--GTGC---TGCCAA- 3' Prpf4 mmu-miR-96 beg:406 end:428 pic:3' TCGTTTTTACACGAT--CACGGTTT 5'& ..|||||||||. ||||| &5' ---GGAAATGTGCTGCTGTGCC--- 3' Prpf4 mmu-miR-98 beg:1423 end:1433 pic:3' TTGTTATGTTGAATGATGGAGT 5'& ||.|||| &5' --------------CTGCCTC- 3' Prpf4 mmu-miR-98 beg:241 end:258 pic:3' TTGTTATGTTGAATGATGGAGT 5'& ||.|.| ||.|||| &5' --CAGTGCC-----CTGCCTC- 3' Prpf4 mmu-miR-99bstar beg:571 end:592 pic:3' GCCTGGGTGTCTGT---GCTCGAAC 5'& || .||||. .|||.||| &5' -GG----GCAGATCTCTTGAGTTTG 3' Prpf4 mmu-miR-99b beg:476 end:496 pic:3' GCGTTCCAGCCAAGATGCCCAC 5'& || |.|| ||||||||| &5' -GC----TTGGGACTACGGGTG 3' Prpf4 mmu-miR-100 beg:478 end:495 pic:3' GTGTTCAAGCCTAGATGCCCAA 5'& |.||. |||||||| &5' -------TTGGGACTACGGGT- 3' Prpf4 mmu-miR-99a beg:478 end:495 pic:3' GTGTTCTAGCCTAGATGCCCAA 5'& |.||. |||||||| &5' -------TTGGGACTACGGGT- 3' Prpf4 mmu-miR-297astar beg:1024 end:1043 pic:3' ATACCCATACACACATACATAT 5'& ||||.| ||||||| &5' ---GGGTGTACCT-TATGTAT- 3' Prpf4 mmu-miR-297b-3p beg:1024 end:1043 pic:3' ATACCCATACACACATACATAT 5'& ||||.| ||||||| &5' ---GGGTGTACCT-TATGTAT- 3' Prpf4 mmu-miR-297cstar beg:1024 end:1043 pic:3' ATACCCATACACACATACATAT 5'& ||||.| ||||||| &5' ---GGGTGTACCT-TATGTAT- 3' Prpf4 mmu-miR-466b-3-3p beg:1025 end:1044 pic:3' AGAATACACACGCAC-ATACATAA 5'& |||. |||||||| &5' --------GTGTACCTTATGTATT 3' Prpf4 mmu-miR-184 beg:2592 end:2611 pic:3' TGGGAATAGTCAAGAGGCAGGT 5'& | || ||| |||||||| &5' -CGCTG--CAGGCCTCCGTCC- 3' Prpf4 mmu-miR-466h beg:847 end:866 pic:3' ATGTGTGTTCGTGTACGTGTGT 5'& || ||. || ||||||| &5' ---ACTCAGA-AC-TGCACAC- 3' Prpf4 mmu-miR-466j beg:847 end:866 pic:3' AATGTGTGTACGTGTACGTGTGT 5'& || || || ||||||| &5' ----ACTCAGA-AC-TGCACAC- 3' Prpf4 mmu-miR-455 beg:510 end:522 pic:3' CACATATACGGGCACCTGACG 5'& || ||||||| &5' --------GC---TGGACTG- 3' Prpf4 mmu-miR-455 beg:668 end:681 pic:3' CACATATACGGGCACCTGACG 5'& || |||||||. &5' --------GC---TGGACTGT 3' Prpf4 mmu-miR-220 beg:2913 end:2928 pic:3' TTCACAGACTGTGACACCACC 5'& | |.||||||| &5' --------GGTATTGTGGTG- 3' Prpf4 mmu-miR-377 beg:768 end:785 pic:3' TGTTTTCAACGGAAACACACTA 5'& ||| |||||||| &5' --------TGCAGCTGTGTGAT 3' Prpf4 mmu-miR-350 beg:1363 end:1377 pic:3' CTTTCACATACCCGAAACACTT 5'& || .||||||| &5' ----------GGTTTTTGTGA- 3' Prpf4 mmu-miR-875-3p beg:1522 end:1540 pic:3' GTATCGGAGTCATAAAAGTCC 5'& | ||| .|||||||| &5' -----CACCAG-GTTTTCAGG 3'

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Prpf4 RAID00018575 mmu-miR-194-5p miRNA MIMAT0000224 Prpf4 mRNA 70052 Prediction 0.2202 Prpf4 RAID00043181 mmu-miR-6954-5p miRNA MIMAT0027808 Prpf4 mRNA 70052 Prediction 0.1828 Prpf4 RAID00053861 mmu-miR-149-3p miRNA MIMAT0016990 Prpf4 mRNA 70052 Prediction 0.1828 Prpf4 RAID00110478 mmu-miR-466i-5p miRNA MIMAT0017325 Prpf4 mRNA 70052 Prediction 0.1828 Prpf4 RAID00122384 mmu-miR-6915-3p miRNA MIMAT0027731 Prpf4 mRNA 70052 Prediction 0.1828 Prpf4 RAID00136043 mmu-miR-297b-5p miRNA MIMAT0003480 Prpf4 mRNA 70052 Prediction 0.1828 Prpf4 RAID00160315 mmu-miR-138-5p miRNA MIMAT0000150 Prpf4 mRNA 70052 Prediction 0.1828 Prpf4 RAID00241166 mmu-miR-7016-5p miRNA MIMAT0027936 Prpf4 mRNA 70052 Prediction 0.1828 Prpf4 RAID00263666 mmu-miR-708-5p miRNA MIMAT0004828 Prpf4 mRNA 70052 Prediction 0.1828 Prpf4 RAID00286434 mmu-miR-1195 miRNA MIMAT0005856 Prpf4 mRNA 70052 CLIP-seq 0.5483 Prpf4 RAID00381952 mmu-miR-7688-5p miRNA MIMAT0029906 Prpf4 mRNA 70052 Prediction 0.1828 Prpf4 RAID00382299 mmu-miR-92b-3p miRNA MIMAT0004899 Prpf4 mRNA 70052 Prediction 0.1828 Prpf4 RAID00410408 mmu-miR-6974-3p miRNA MIMAT0027851 Prpf4 mRNA 70052 Prediction 0.1828 Prpf4 RAID00478392 mmu-miR-363-3p miRNA MIMAT0000708 Prpf4 mRNA 70052 Prediction 0.1828 Prpf4 RAID00485153 mmu-miR-5135 miRNA MIMAT0020646 Prpf4 mRNA 70052 CLIP-seq 0.5483 Prpf4 RAID00531298 mmu-miR-326-5p miRNA MIMAT0017027 Prpf4 mRNA 70052 Prediction 0.1828 Prpf4 RAID00555591 mmu-miR-486b-3p miRNA MIMAT0014944 Prpf4 mRNA 70052 Prediction 0.1828 Prpf4 RAID00730233 mmu-miR-322-3p miRNA MIMAT0000549 Prpf4 mRNA 70052 Prediction 0.1828 Prpf4 RAID00809527 mmu-miR-141-3p miRNA MIMAT0000153 Prpf4 mRNA 70052 Prediction 0.1828 Prpf4 RAID00848843 mmu-miR-5622-3p miRNA MIMAT0022372 Prpf4 mRNA 70052 Prediction 0.1828 Prpf4 RAID00886851 mmu-miR-338-3p miRNA MIMAT0000582 Prpf4 mRNA 70052 Prediction 0.1828 Prpf4 RAID00905345 mmu-miR-202-3p miRNA MIMAT0000235 Prpf4 mRNA 70052 CLIP-seq 0.5483 Prpf4 RAID00942850 mmu-miR-7119-3p miRNA MIMAT0028136 Prpf4 mRNA 70052 Prediction 0.1828 Prpf4 RAID00946057 mmu-miR-182-5p miRNA MIMAT0000211 Prpf4 mRNA 70052 Prediction 0.1828 Prpf4 RAID00978549 mmu-miR-6981-3p miRNA MIMAT0027865 Prpf4 mRNA 70052 Prediction 0.1828 Prpf4 RAID01019637 mmu-miR-763 miRNA MIMAT0003896 Prpf4 mRNA 70052 Prediction 0.1828 Prpf4 RAID01052944 mmu-miR-376b-3p miRNA MIMAT0001092 Prpf4 mRNA 70052 Prediction 0.2202 Prpf4 RAID01074582 mmu-miR-136-5p miRNA MIMAT0000148 Prpf4 mRNA 70052 Prediction 0.2202 Prpf4 RAID01127242 mmu-miR-7229-3p miRNA MIMAT0028427 Prpf4 mRNA 70052 Prediction 0.1828 Prpf4 RAID01217120 mmu-miR-145b miRNA MIMAT0025105 Prpf4 mRNA 70052 Prediction 0.1828 Prpf4 RAID01238576 mmu-miR-6391 miRNA MIMAT0025140 Prpf4 mRNA 70052 Prediction 0.1828 Prpf4 RAID01271052 mmu-miR-382-5p miRNA MIMAT0000747 Prpf4 mRNA 70052 Prediction 0.1828 Prpf4 RAID01286111 mmu-miR-1943-5p miRNA MIMAT0009408 Prpf4 mRNA 70052 Prediction 0.1828 Prpf4 RAID01297267 mmu-miR-25-3p miRNA MIMAT0000652 Prpf4 mRNA 70052 Prediction 0.1828 Prpf4 RAID01319466 mmu-miR-7030-3p miRNA MIMAT0027965 Prpf4 mRNA 70052 Prediction 0.1828 Prpf4 RAID01336917 mmu-miR-137-3p miRNA MIMAT0000149 Prpf4 mRNA 70052 Prediction 0.1828 Prpf4 RAID01411379 mmu-miR-15b-5p miRNA MIMAT0000124 Prpf4 mRNA 70052 Prediction 0.1828 Prpf4 RAID01422246 mmu-miR-1964-5p miRNA MIMAT0017349 Prpf4 mRNA 70052 Prediction 0.1828 Prpf4 RAID01424259 mmu-miR-27a-3p miRNA MIMAT0000537 Prpf4 mRNA 70052 Prediction 0.1828 Prpf4 RAID01491004 mmu-miR-3061-5p miRNA MIMAT0014828 Prpf4 mRNA 70052 Prediction 0.1828 Prpf4 RAID01504488 mmu-miR-27b-3p miRNA MIMAT0000126 Prpf4 mRNA 70052 Prediction 0.1828 Prpf4 RAID01516037 mmu-miR-7001-5p miRNA MIMAT0027904 Prpf4 mRNA 70052 Prediction 0.1828 Prpf4 RAID01542502 mmu-miR-6927-3p miRNA MIMAT0027755 Prpf4 mRNA 70052 Prediction 0.1828 Prpf4 RAID01575783 mmu-miR-142a-5p miRNA MIMAT0000154 Prpf4 mRNA 70052 Prediction 0.1828 Prpf4 RAID01601721 mmu-miR-134-5p miRNA MIMAT0000146 Prpf4 mRNA 70052 Prediction 0.1828 Prpf4 RAID01680654 mmu-miR-346-3p miRNA MIMAT0017039 Prpf4 mRNA 70052 Prediction 0.1828 Prpf4 RAID01750785 mmu-miR-574-5p miRNA MIMAT0004893 Prpf4 mRNA 70052 Prediction 0.1828 Prpf4 RAID01771482 mmu-miR-6951-5p miRNA MIMAT0027802 Prpf4 mRNA 70052 Prediction 0.1828 Prpf4 RAID01855122 mmu-miR-7669-3p miRNA MIMAT0029845 Prpf4 mRNA 70052 Prediction 0.1828 Prpf4 RAID01924191 mmu-miR-384-3p miRNA MIMAT0001076 Prpf4 mRNA 70052 Prediction 0.1828 Prpf4 RAID01972619 mmu-miR-362-3p miRNA MIMAT0004684 Prpf4 mRNA 70052 Prediction 0.1828 Prpf4 RAID02013403 mmu-miR-6951-3p miRNA MIMAT0027803 Prpf4 mRNA 70052 Prediction 0.1828 Prpf4 RAID02055954 mmu-miR-485-5p miRNA MIMAT0003128 Prpf4 mRNA 70052 Prediction 0.1828 Prpf4 RAID02105429 mmu-miR-466k miRNA MIMAT0005845 Prpf4 mRNA 70052 Prediction 0.1828 Prpf4 RAID02106502 mmu-miR-5107-5p miRNA MIMAT0020615 Prpf4 mRNA 70052 Prediction 0.1828 Prpf4 RAID02187270 mmu-miR-713 miRNA MIMAT0003504 Prpf4 mRNA 70052 Prediction 0.1828 Prpf4 RAID02202663 mmu-miR-742-3p miRNA MIMAT0004237 Prpf4 mRNA 70052 Prediction 0.1828 Prpf4 RAID02410193 mmu-miR-367-3p miRNA MIMAT0003181 Prpf4 mRNA 70052 Prediction 0.1828 Prpf4 RAID02436244 mmu-miR-6925-5p miRNA MIMAT0027750 Prpf4 mRNA 70052 Prediction 0.1828 Prpf4 RAID02453342 mmu-miR-3089-5p miRNA MIMAT0014899 Prpf4 mRNA 70052 CLIP-seq 0.5483 Prpf4 RAID02504271 mmu-miR-143-3p miRNA MIMAT0000247 Prpf4 mRNA 70052 Prediction 0.1828 Prpf4 RAID02514227 mmu-miR-145a-5p miRNA MIMAT0000157 Prpf4 mRNA 70052 Prediction 0.2381 Prpf4 RAID02521288 mmu-miR-129-5p miRNA MIMAT0000209 Prpf4 mRNA 70052 Prediction 0.1828 Prpf4 RAID02560561 mmu-miR-200a-3p miRNA MIMAT0000519 Prpf4 mRNA 70052 Prediction 0.1828 Prpf4 RAID02595833 mmu-miR-335-5p miRNA MIMAT0000766 Prpf4 mRNA 70052 CLIP-seq 0.5483 Prpf4 RAID02623232 mmu-miR-804 miRNA MIMAT0004210 Prpf4 mRNA 70052 CLIP-seq 0.5483 Prpf4 RAID02631250 mmu-miR-486a-3p miRNA MIMAT0017206 Prpf4 mRNA 70052 Prediction 0.1828 Prpf4 RAID02657298 mmu-miR-7578 miRNA MIMAT0029578 Prpf4 mRNA 70052 Prediction 0.1828 Prpf4 RAID02661857 mmu-miR-7116-3p miRNA MIMAT0028130 Prpf4 mRNA 70052 Prediction 0.1828 Prpf4 RAID02714161 mmu-miR-23b-3p miRNA MIMAT0000125 Prpf4 mRNA 70052 Prediction 0.1828 Prpf4 RAID02752302 mmu-miR-5120 miRNA MIMAT0020628 Prpf4 mRNA 70052 Prediction 0.1828 Prpf4 RAID02821032 mmu-miR-297c-5p miRNA MIMAT0004865 Prpf4 mRNA 70052 Prediction 0.1828 Prpf4 RAID03051032 mmu-miR-1306-5p miRNA MIMAT0019136 Prpf4 mRNA 70052 Prediction 0.1828 Prpf4 RAID03053343 mmu-miR-223-3p miRNA MIMAT0000665 Prpf4 mRNA 70052 Prediction 0.1828 Prpf4 RAID03060792 mmu-miR-374c-5p miRNA MIMAT0014953 Prpf4 mRNA 70052 Prediction 0.2202 Prpf4 RAID03200113 mmu-miR-466l-5p miRNA MIMAT0017322 Prpf4 mRNA 70052 Prediction 0.1828 Prpf4 RAID03316404 mmu-miR-292b-5p miRNA MIMAT0029864 Prpf4 mRNA 70052 Prediction 0.1828 Prpf4 RAID03325796 mmu-miR-7047-5p miRNA MIMAT0027998 Prpf4 mRNA 70052 Prediction 0.1828 Prpf4 RAID03332225 mmu-miR-32-5p miRNA MIMAT0000654 Prpf4 mRNA 70052 Prediction 0.1828 Prpf4 RAID03363680 mmu-miR-292a-5p miRNA MIMAT0000369 Prpf4 mRNA 70052 CLIP-seq//Prediction 0.6308 Prpf4 RAID03378804 mmu-miR-466d-5p miRNA MIMAT0004930 Prpf4 mRNA 70052 Prediction 0.1828 Prpf4 RAID03411526 mmu-miR-433-3p miRNA MIMAT0001420 Prpf4 mRNA 70052 Prediction 0.1828 Prpf4 RAID03415471 mmu-miR-494-3p miRNA MIMAT0003182 Prpf4 mRNA 70052 Prediction 0.1828 Prpf4 RAID03418779 mmu-miR-3058-5p miRNA MIMAT0014813 Prpf4 mRNA 70052 Prediction 0.1828 Prpf4 RAID03451520 mmu-miR-6378 miRNA MIMAT0025124 Prpf4 mRNA 70052 Prediction 0.1828 Prpf4 RAID03510561 mmu-miR-351-3p miRNA MIMAT0017042 Prpf4 mRNA 70052 Prediction 0.1828 Prpf4 RAID03522710 mmu-miR-139-5p miRNA MIMAT0000656 Prpf4 mRNA 70052 CLIP-seq//Prediction 0.6478 Prpf4 RAID03572499 mmu-miR-297a-5p miRNA MIMAT0000375 Prpf4 mRNA 70052 Prediction 0.1828 Prpf4 RAID03668857 mmu-miR-501-5p miRNA MIMAT0003508 Prpf4 mRNA 70052 Prediction 0.1828 Prpf4 RAID03707095 mmu-miR-290a-5p miRNA MIMAT0000366 Prpf4 mRNA 70052 CLIP-seq//Prediction 0.6308 Prpf4 RAID03712284 mmu-miR-92a-3p miRNA MIMAT0000539 Prpf4 mRNA 70052 Prediction 0.1828 Prpf4 RAID03753273 mmu-miR-6945-3p miRNA MIMAT0027791 Prpf4 mRNA 70052 Prediction 0.1828 Prpf4 RAID03754399 mmu-miR-294-5p miRNA MIMAT0004574 Prpf4 mRNA 70052 Prediction 0.1828 Prpf4 RAID03849505 mmu-miR-23a-3p miRNA MIMAT0000532 Prpf4 mRNA 70052 Prediction 0.1828 Prpf4 RAID03960571 mmu-miR-186-5p miRNA MIMAT0000215 Prpf4 mRNA 70052 Prediction 0.1828 Prpf4 RAID03982389 mmu-miR-6967-5p miRNA MIMAT0027836 Prpf4 mRNA 70052 Prediction 0.1828 Prpf4 RAID03995402 mmu-miR-7009-3p miRNA MIMAT0027923 Prpf4 mRNA 70052 Prediction 0.1828 Prpf4 RAID03999818 mmu-miR-6901-5p miRNA MIMAT0027702 Prpf4 mRNA 70052 Prediction 0.1828