DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004640 mmu-miR-325 192192 Shkbp1 aacuauccuccacgaGUUAUUu |||||| caaagccacuaucucCAAUAAa 2 8 143 164 [mm9:7:28127168-28127189:-] 0.6169 120 6 -6.13 -0.1313 MIMAT0000571 mmu-miR-331-3p 192192 Shkbp1 aagauCCU-AUCCGGGUCCCCg ||| |:| |||||||| cauguGGACUGGUCCCAGGGGa 2 17 22 43 [mm9:7:28127289-28127310:-] 0.5580 159 7 -26.90 -0.4076 MIMAT0003166 mmu-miR-546 192192 Shkbp1 cugaggcaCGGUGGUa ||||||| ---aucuaGCCACCAa 2 9 1 13 [mm9:7:28127319-28127331:-] 0.5580 140 7 -12.98 -0.7838 MIMAT0003742 mmu-miR-455 192192 Shkbp1 cacaUAUACGG----GCACCUGACg ||:|||| :|||||||| accaAUGUGCCUUCAUGUGGACUGg 2 18 9 33 [mm9:7:28127299-28127323:-] 0.5580 156 7 -25.33 -0.2673 MIMAT0009402 mmu-miR-1938 192192 Shkbp1 cuggcuugauGUUC-AGGGUGGc ||:| ||||||| ucugugucgcCAGGUUCCCACCu 2 13 102 124 [mm9:7:28127208-28127230:-] 0.6047 147 7 -20.53 -0.4460 MIMAT0009405 mmu-miR-1941-5p 192192 Shkbp1 uucggagacaUGGUCGUAGAGGga :||| :|||||| aaaagccaaaGCCACUAUCUCCaa 3 15 137 160 [mm9:7:28127172-28127195:-] 0.6169 134 0 -21.97 -0.1965 MIMAT0011222 mmu-miR-2146 192192 Shkbp1 guguaccuugggaAGAGGUg |||||| gccaaagccacuaUCUCCAa 2 8 141 160 [mm9:7:28127172-28127191:-] 0.6169 120 6 -15.00 -0.2148 MIMAT0012771 mmu-miR-432 192192 Shkbp1 gacgGGUGACUAGAUGAGGUUcu ||||| || |||||| aaagCCACU-AU---CUCCAAua 3 20 144 162 [mm9:7:28127170-28127188:-] 0.6169 129 0 -14.30 -0.1676 MIMAT0015645 mmu-miR-3473 192192 Shkbp1 ccgacucgGUAGAGAGGu | ||||||| gguucccaCCUCUCUCCu 2 11 114 131 [mm9:7:28127201-28127218:-] 0.6047 142 7 -16.88 -0.6807 MIMAT0000134 mmu-miR-124 192192 Shkbp1 ccguaaGUGG-CGCACGGAAu |||| :||||||| ucuagcCACCAAUGUGCCUUc 2 15 2 22 [mm9:7:28127310-28127330:-] 0.5580 149 7 -17.88 -0.2716 MIMAT0000142 mmu-miR-9 192192 Shkbp1 aguaugucGAUCUAUUGGUUUCu ||| | |:|||||| cuccuuuuCUA-AAAGCCAAAGc 2 16 127 148 [mm9:7:28127184-28127205:-] 0.6047 137 6 -11.04 -0.1104 MIMAT0000211 mmu-miR-182 192192 Shkbp1 gccacacucaaGAUGGUAACGGUUu | ::|| |||||| cuccaauaaaaCCGUCACUGCCAAc 2 15 155 179 [mm9:7:28127153-28127177:-] 0.5562 122 6 -12.02 -0.1684 MIMAT0000214 mmu-miR-185 192192 Shkbp1 aguccuugacggaaAGAGAGGu ||||||| gccagguucccaccUCUCUCCu 2 9 110 131 [mm9:7:28127201-28127222:-] 0.6047 140 7 -20.15 -0.6845 MIMAT0000381 mmu-miR-34c 192192 Shkbp1 cguuagucgaUUGAU-GUGACGGa ||| : ||||||| ucuccaauaaAACCGUCACUGCCa 2 14 154 177 [mm9:7:28127155-28127178:-] 0.6291 144 7 -15.18 -1.0733 MIMAT0000382 mmu-miR-34b-5p 192192 Shkbp1 uguuagucgauuaauGUGACGGa ||||||| cuccaauaaaaccguCACUGCCa 2 9 155 177 [mm9:7:28127155-28127177:-] 0.6291 140 7 -13.80 -1.0733 MIMAT0000541 mmu-miR-96 192192 Shkbp1 ucGUU-UUUACACGAUCACGGUUu ||| ||| |: | |||||| ucCAAUAAAACCGUCACUGCCAAc 2 22 156 179 [mm9:7:28127153-28127176:-] 0.5562 128 6 -8.23 -0.1636 MIMAT0000542 mmu-miR-34a 192192 Shkbp1 uguuGGUCGAUU---CUGUGACGGu ||| : || | ||||||| aucuCCAAUAAAACCGUCACUGCCa 2 19 153 177 [mm9:7:28127155-28127179:-] 0.6291 145 7 -18.64 -1.0733 MIMAT0001542 mmu-miR-449a 192192 Shkbp1 uggucgaUUGUUAUGUGACGGu ||| :| ||||||| ccaauaaAACCGU-CACUGCCa 2 16 157 177 [mm9:7:28127155-28127175:-] 0.6291 149 7 -17.39 -1.0454 MIMAT0003460 mmu-miR-449c 192192 Shkbp1 ggucgaUCGUUACGUGACGGa | | :| ||||||| caauaaAACCGU-CACUGCCa 2 16 158 177 [mm9:7:28127155-28127174:-] 0.6291 141 7 -12.89 -1.0507 MIMAT0003780 mmu-miR-490 192192 Shkbp1 gucguacCUCAGGAGGUCCAAc | || | ||||||| guaaucuGUGU-CGCCAGGUUc 2 16 98 118 [mm9:7:28127214-28127234:-] 0.6047 145 7 -15.52 -0.1145 MIMAT0004847 mmu-miR-882 192192 Shkbp1 ugauuacgcGAUUGAGAGAGGa | | |||||||| gccagguucCCACCUCUCUCCu 2 14 110 131 [mm9:7:28127201-28127222:-] 0.6047 149 7 -16.30 -0.6770 MIMAT0005447 mmu-miR-449b 192192 Shkbp1 cggucgaUUGUUGUGACGGa | |: ||||||| caauaaaACCGUCACUGCCa 2 14 158 177 [mm9:7:28127155-28127174:-] 0.6291 145 7 -14.07 -1.0733

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G069844 Shkbp1 Mus musculus 192192 19536157 0 0 R53354; MOUSE$SHKBP1_01; Binding factors: mmu-let-7a-5p , mmu-let-7b-5p , mmu-let-7c-5p , mmu-let-7e-5p , mmu-let-7f-5p , mmu-let-7g-5p , mmu-let-7i-5p , mmu-miR-98-5p // 0 0 R53355; MOUSE$SHKBP1_02; Binding factors: mmu-miR-124-3p

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Shkbp1 mmu-miR-449b beg:161 end:177 pic:3' CGGTCGATTGTT-GTGACGGA 5'& ||| ||||||| &5' -------AACCGTCACTGCC- 3' Shkbp1 mmu-miR-34a beg:161 end:178 pic:3' TGTTGGTCGATTCTGTGACGGT 5'& |||| |. |||||||| &5' --AACC-GT-----CACTGCCA 3' Shkbp1 mmu-miR-449c beg:165 end:177 pic:3' GGTCGATCGTTAC-GTGACGGA 5'& | ||||||| &5' ------------GTCACTGCC- 3' Shkbp1 mmu-miR-34b-5p beg:167 end:177 pic:3' TGTTAGTCGATTAATGTGACGGA 5'& ||||||| &5' ---------------CACTGCC- 3' Shkbp1 mmu-miR-490 beg:104 end:118 pic:3' GTCGTACCTCAGGAGGTCCAAC 5'& ||| ||||||| &5' ---------GTCG-CCAGGTT- 3' Shkbp1 mmu-miR-546 beg:0 end:13 pic:3' CTGAGGCACGGTGGTA 5'& ||. ||||||| &5' ---TCTA-GCCACCA- 3' Shkbp1 mmu-miR-124 beg:5 end:22 pic:3' CCGTAAGTGGC-GCACGGAAT 5'& |||| .||||||| &5' ------CACCAATGTGCCTT- 3' Shkbp1 mcmv-miR-m01-1 beg:112 end:134 pic:3' GGCAAGCTGCAATAAGAGGAGA 5'& |||| ||||||.| &5' --GTTCCCACCTC-TCTCCTTT 3' Shkbp1 mghv-miR-M1-7-5p beg:110 end:134 pic:3' TCCAATGGCGTGGAGGT-GGAAA 5'& ||||| || ||||||. ||||| &5' AGGTT-CC-CACCTCTCTCCTTT 3' Shkbp1 mmu-miR-182 beg:162 end:179 pic:3' GCCACACTCAAGATGGTA---ACGGTTT 5'& |||.| |||||| &5' -------------ACCGTCACTGCCAA- 3' Shkbp1 mmu-miR-185 beg:110 end:131 pic:3' AGTCCTTGAC-GGAAAGAGAGGT 5'& |||| | || ||||||| &5' -CAGGTTCCCACC--TCTCTCC- 3' Shkbp1 mmu-miR-1894-5p beg:38 end:61 pic:3' TCTCCGTCCACCAT--CCCCTCTC 5'& |.|| ||| ||||||.| &5' -GGGGACT-TGGAACTGGGGAGGG 3' Shkbp1 mmu-miR-1938 beg:109 end:124 pic:3' CTGGCTTGATGTTC-AGGGTGGC 5'& ||.| ||||||| &5' ----------CAGGTTCCCACC- 3' Shkbp1 mmu-miR-2146 beg:143 end:160 pic:3' GTGTACCTTGG-GA-AGAGGTG 5'& |.|| || |||||| &5' -------AGCCACTATCTCCA- 3' Shkbp1 mmu-miR-28 beg:76 end:95 pic:3' GAGTTATCTGACACTCGAGGAA 5'& .|.| |.||||||| &5' ------GGGCCAGGGGCTCCTT 3' Shkbp1 mmu-miR-296-5p beg:44 end:66 pic:3' TGTCCTA-ACTCC-CCCCCGGGA 5'& ||| ||.|| ||||||.. &5' ---GGAACTGGGGAGGGGGCTT- 3' Shkbp1 mmu-miR-3072 beg:44 end:64 pic:3' TCTTCCGAAGGA-CCTCCCCCGT 5'& || |. ||||||||| &5' ----GGAA-CTGGGGAGGGGGC- 3' Shkbp1 mmu-miR-331-3p beg:69 end:90 pic:3' AAGATCCTA--TCCGGGTCCCCG 5'& ||| ||| |||||||| &5' -----GGAGCCAGGGCCAGGGGC 3' Shkbp1 mmu-miR-3473 beg:111 end:131 pic:3' CCGACTCGGT--AGAGAGGT 5'& ||.| ||| ||||||| &5' GGTTC--CCACCTCTCTCC- 3' Shkbp1 mmu-miR-3474 beg:19 end:42 pic:3' CTTAGGTGCA---GAGGAGGGTCCC 5'& |.||.|| || |||||||| &5' ---TTCATGTGGACTGGTCCCAGGG 3' Shkbp1 mmu-miR-34c beg:155 end:177 pic:3' CGTTAGTCGATTGAT-GTGACGGA 5'& |||| ||| ||||||| &5' -CAATAA---AACCGTCACTGCC- 3' Shkbp1 mmu-miR-449a beg:154 end:178 pic:3' TGGTCGATTGTTAT-GTGACGGT 5'& ||| ||| |||||||| &5' -CCAA-TAAAACCGTCACTGCCA 3' Shkbp1 mmu-miR-450a-3p beg:140 end:162 pic:3' TACTTAC-GTTTCG----TAGGGGTTA 5'& | |||||| |||.||||| &5' ------GCCAAAGCCACTATCTCCAAT 3' Shkbp1 mmu-miR-455 beg:10 end:33 pic:3' CACATATACGGG----CACCTGACG 5'& ||.||||. |||||||| &5' ----ATGTGCCTTCATGTGGACTG- 3' Shkbp1 mmu-miR-708 beg:73 end:95 pic:3' GGGTCGATCTAACA-TTCGAGGAA 5'& ||| ||. ..||||||| &5' ---AGCCAGGGCCAGGGGCTCCTT 3' Shkbp1 mmu-miR-710 beg:31 end:49 pic:3' GAGTTGAGAGGGG-TTCTGAACC 5'& |||| ..||||||| &5' --------TCCCAGGGGACTTGG 3' Shkbp1 mmu-miR-760 beg:62 end:84 pic:3' AGGGGTGTCTGGGTCTCGGC 5'& |||. ..|| ||||.||| &5' TCCTGTTGGAGCCAGGGCC- 3' Shkbp1 mmu-miR-767 beg:78 end:101 pic:3' ACGAGTCTGTT-GGTACCACGT 5'& || |||. . || |||||.| &5' -GC-CAGGGGCTCCTTGGTGTA 3' Shkbp1 mmu-miR-876-3p beg:142 end:154 pic:3' ACTTAATGAAACATTTGGTGAT 5'& ||.|||||| &5' -------------AAGCCACTA 3' Shkbp1 mmu-miR-882 beg:120 end:132 pic:3' TGATTACGCGATTGAGAGAGGA 5'& ||||||||| &5' -------------CTCTCTCCT 3'

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Shkbp1; Sb1 mmu-let-7a 145 159 UGAUAUGUUGGAUGAUGGAGU |:|| ||||:||| ------AAGCC-ACUAUCUCC Shkbp1; Sb1 mmu-let-7b 139 159 -UUGGUGUGUUGGAUGAUGGAGU |:||| |:|| ||||:||| AAGCCAA--AGCC-ACUAUCUCC Shkbp1; Sb1 mmu-let-7c 139 159 -UUGGUAUGUUGGAUGAUGGAGU |:||| |:|| ||||:||| AAGCCAA--AGCC-ACUAUCUCC Shkbp1; Sb1 mmu-let-7d 102 128 UGAUACGUUGGAUGA----UGGAGA- ||:||: :|| : | |||||| UCUGUGUCGCCAGGUUCCCACCUCUC Shkbp1; Sb1 mmu-let-7e 102 127 UGAUAUGUUGG----AGGAUGGAGU ||:|: :|| ||| ||||| UCUGUGUCGCCAGGUUCCCACCUCU Shkbp1; Sb1 mmu-let-7i 139 159 UGUCGUGUUUGAUGAUGGAGU ||| ||:| ||||:||| -AAGCCAAAGCCACUAUCUCC Shkbp1; Sb1 mmu-miR-124a 7 23 CCGUAAGUGGC-GCACGGAAU |||| :||||||| -----CCACCAAUGUGCCUUC Shkbp1; Sb1 mmu-miR-125a 49 83 GUGUCCAAUUUCCCAGA------------GUCCCU || || |::||| || ||||| AACUGGGGAGGGGG-CUUCCUGUUGGAGCCAGGGC Shkbp1; Sb1 mmu-miR-125b 69 90 AGUGUUCAAUCCCAGAGUCCCU- : :|| |||| | |||||: GUUGGAGCCAGGG-C-CAGGGGC Shkbp1; Sb1 mmu-miR-127 74 94 -CGGU-UCGAGUCUGCCUAGGCU |||| :|| |||: || ||| AGCCAGGGC-CAGG-GGCUCCU- Shkbp1; Sb1 mmu-miR-129-3p 51 67 UACGAAAAACCCCAUUCCCGAA- ||||| ::|||||| -------CUGGGGAGGGGGCUUC Shkbp1; Sb1 mmu-miR-132 8 34 GCUGG-UAC-CG-----ACAUCUGACAAU ||| ||| || |||:||||| -CACCAAUGUGCCUUCAUGUGGACUGG-- Shkbp1; Sb1 mmu-miR-133a 26 47 UGUC-GACCAACUUCCCCUGGUU :| ||||| |||||||: -UGGACUGGUCCCAGGGGACUU- Shkbp1; Sb1 mmu-miR-133b 25 47 -AUC-GACCAACUUCCCCUGGUU |:| ||||| |||||||: GUGGACUGGUCCCAGGGGACUU- Shkbp1; Sb1 mmu-miR-145 55 84 -UUCCCU--AAGGACCCUUUUGA-CCUG- :||||: |||||| ::|:| ||:| GGAGGGGGCUUCCUGUUGGAGCCAGGGCC Shkbp1; Sb1 mmu-miR-149 52 82 -CCUCACUUCUGU------GCCUCGGUCU- ||:| | |:| :||||||||: UGGGGAGGGGGCUUCCUGUUGGAGCCAGGG Shkbp1; Sb1 mmu-miR-150 28 61 GUGACCAU-GUUCCCAA---------CCCUCU- |||||| ||:||| |||||: GACUGGUCCCAGGGGACUUGGAACUGGGGAGGG Shkbp1; Sb1 mmu-miR-152 9 35 GGGUU-CAAGACAGUACG--UGACU- |||| || |||||: ||||: ACCAAUGUGCCUUCAUGUGGACUGGU Shkbp1; Sb1 mmu-miR-185 146 161 CUUGACGGAAAGAGAGGU- ||| |||||| ----AGCCACUAUCUCCAA Shkbp1; Sb1 mmu-miR-191 50 74 UCGACGAAAACCCU-AAGG-CAAC- ||| |||: |||| |||| -ACUGGGGAGGGGGCUUCCUGUUGG Shkbp1; Sb1 mmu-miR-193 58 87 GACCCUGAA--ACA--------UCCGGUCAA |||:||| ||| :|||||| -GGGGGCUUCCUGUUGGAGCCAGGGCCAGG- Shkbp1; Sb1 mmu-miR-199a 26 57 -CUUGUCCA---UCAGACUUG-----UGACCC- |:|| ||| || |:|| |||||| UGGACUGGUCCCAGG--GGACUUGGAACUGGGG Shkbp1; Sb1 mmu-miR-199b 26 57 -CUUGUCCA---UCAGAUUUG-----UGACCC- |:|| ||| || ::|| |||||| UGGACUGGUCCCAGG--GGACUUGGAACUGGGG Shkbp1; Sb1 mmu-miR-207 52 91 CUCCCUCC------------UCUCGGUCC---UCUUCG- :|||||| :|||||||| || || UGGGGAGGGGGCUUCCUGUUGGAGCCAGGGCCAGGGGCU Shkbp1; Sb1 mmu-miR-224 39 67 AUUUGCCUUGG----UGAUCA-----CUGAAU ||:||: |||:| |:||| ----GGGGACUUGGAACUGGGGAGGGGGCUUC Shkbp1; Sb1 mmu-miR-24 63 86 GACAAGGACGACUU--GACUCGGU- ||||||:||:| | |:|||| --CUUCCUGUUGGAGCCAGGGCCAG Shkbp1; Sb1 mmu-miR-25 78 104 AGUCUGG-CUCUGU----UCACGUUAC :|:|| |:|:| :|||:||| -AGGGCCAGGGGCUCCUUGGUGUAAUC Shkbp1; Sb1 mmu-miR-27a 39 60 CGCCUUGAAUCGGUGACA-CUU- ||:||||:| |||| ||: -GGGGACUUGGA-ACUGGGGAGG Shkbp1; Sb1 mmu-miR-28 78 96 GAGUUAUCUGACACUCGAGGAA- :|:| |:||||||| -----AGGGCCAGGGGCUCCUUG Shkbp1; Sb1 mmu-miR-292-5p 55 77 GUUUUCUCGGGGGUCAAACUCA :|::|:||::|| ||| ||| GGAGGGGGCUUCCUGUUGGAGC Shkbp1; Sb1 mmu-miR-296 36 70 UGUCCUA---------ACUCC-CCCCCG--GGA- ||||: ||:|| |||||| ||| CCAGGGGACUUGGAACUGGGGAGGGGGCUUCCUG Shkbp1; Sb1 mmu-miR-302b* 56 77 -UCUUUCGUAAGGGUACAAUUUCA || :|| ||||: |||::|| GAGGGGGC-UUCCU--GUUGGAGC Shkbp1; Sb1 mmu-miR-323 83 110 -UCUCC-AGCUGGCACAUU--ACACG- ||:|| || : |||||| ||||: CAGGGGCUCCUUGGUGUAAUCUGUGUC Shkbp1; Sb1 mmu-miR-324-3p 73 98 GGUC-GUCGUGGACCCCGUC--ACC- || ||| :|| ||||| ||| -GAGCCAGGGCCAGGGGCUCCUUGGU Shkbp1; Sb1 mmu-miR-326 69 90 UGACCUCCUUCCCGGGUCUCC- :||||| ||||| |||:|| GUUGGAGCCAGGGC-CAGGGGC Shkbp1; Sb1 mmu-miR-328 54 87 UGCCUUC-CCG--------UCUC--UCCCGGUC- |||:| ||| :||| |||||||| -GGGAGGGGGCUUCCUGUUGGAGCCAGGGCCAGG Shkbp1; Sb1 mmu-miR-331 66 91 AAGAU--CCUA--UCCGGGUCCCCG- ||: ||| ||| |||||||| -CCUGUUGGAGCCAGGGCCAGGGGCU Shkbp1; Sb1 mmu-miR-337 57 83 -UUUCCGUAGUAUAUCCUCGA--CUU :::||| || |:| ||||| |: AGGGGGCUUCCUGUUGGAGCCAGGGC Shkbp1; Sb1 mmu-miR-339 59 83 ACUCG-AGGACCUCCU--GUCCCU |:|| ||||| ||| ||||| GGGGCUUCCUGUUGGAGCCAGGGC Shkbp1; Sb1 mmu-miR-351 78 98 GUCCGAGUUUCCCGAGGAGUCCCU :||| | |:||||||||::| AGGGC-C-AGGGGCUCCUUGGU-- Shkbp1; Sb1 mmu-miR-422b 60 87 -CCGGAAGACUGA---GGUUCAGGUC- |||:| ||| |||:| |||| GGGCUUCCUGUUGGAGCCAGGGCCAGG Shkbp1; Sb1 mmu-miR-423 50 92 -GAC----UCCCCGGAG------------UCUGG--CUCGA ||| :|||||:|| :|:|| |:||| ACUGGGGAGGGGGCUUCCUGUUGGAGCCAGGGCCAGGGGCUC Shkbp1; Sb1 mmu-miR-449 146 177 -UGGUCGAUU---GUUAU-------GUGACGGU :||| ||| ||||| ||||||| AGCCA-CUAUCUCCAAUAAAACCGUCACUGCC- Shkbp1; Sb1 mmu-miR-450b* 14 41 -UACG----UACGUUUUACAAGGGUUA :||| |||:::| || |||||: UGUGCCUUCAUGUGGACUGGUCCCAGG Shkbp1; Sb1 mmu-miR-455-3p 12 34 UCACAUAUACGGG----CACCUGACGUA ||:||||: |||||||| ----AAUGUGCCUUCAUGUGGACUGG-- Shkbp1; Sb1 mmu-miR-464 32 50 AUAGAGUGUCUUAUUUGAACCAU :|| | |||: ::|||||| GGUC-C-CAGG--GGACUUGGA- Shkbp1; Sb1 mmu-miR-469 38 65 -CCUGUGGUUCUAGUUACUUUCUCCGU ||: ||: :|| | |:|:|:||| AGGGGACUUGGAACUGGGGAGGGGGCU Shkbp1; Sb1 mmu-miR-483 39 63 UGUUCUGC-CCU---CCCCUCCUCACU ::||| ||| |||||||:| -GGGGACUUGGAACUGGGGAGGGGG-- Shkbp1; Sb1 mmu-miR-490 60 88 GUCGU------ACCUCAGGA---GGUCCAAC :|| ||||| || ||||| GGGCUUCCUGUUGGAG-CCAGGGCCAGGG-- Shkbp1; Sb1 mmu-miR-500 72 91 GACUUGGGAACGGGUCCACGUA ||:|| | ||||| || -GGAGCCAG-GGCCAGGGGCU- Shkbp1; Sb1 mmu-miR-540 110 133 -GGUCCUAGC-UGGAGACUGGA- ||||| || |||||| ||| GCCAGGUUCCCACCUCUCUCCUU Shkbp1; Sb1 mmu-miR-542-5p 13 43 -GCACU---GUACU----ACUAGGGGCUC- :||| |||| ||:|||| |:| AUGUGCCUUCAUGUGGACUGGUCCCAGGGG Shkbp1; Sb1 mmu-miR-546 101 115 CUGAGGCACGGUGGUA ||:|||:|:||| --AUCUGUGUCGCCAG Shkbp1; Sb1 mmu-miR-615 53 89 -UUCUCCCUC------------UGGGUCCGAG-CCU- ::|||||:| :|| :||| | ||: GGGGAGGGGGCUUCCUGUUGGAGCCAGGGC-CAGGGG Shkbp1; Sb1 mmu-miR-652 85 115 ACGUGUUGGGAUCAC--------C-GCGGUAA | :| ||:|:||| | ||||| GGGGCU-CCUUGGUGUAAUCUGUGUCGCCAG- Shkbp1; Sb1 mmu-miR-665 56 99 AUUCCCUGGAG-------------UCGG------AGGA-CCA |:|||:|:|| :||| |||| ||| GAGGGGGCUUCCUGUUGGAGCCAGGGCCAGGGGCUCCUUGGUG Shkbp1; Sb1 mmu-miR-671 17 70 -GGAGG---------UCGGGGA-----GG----------- UCCCGAAGGA |||:| :|:||| |: :||||||||| GCCUUCAUGUGGACUGGUCCCAGGGGACUUGGAACUGGGGAGGGGGCUUCCUG Shkbp1; Sb1 mmu-miR-672 108 127 GUGUGUGUCAUGUGGUUGGAGU |:| ||| || ||||| -UCGC-CAGGUU-CCCACCUCU Shkbp1; Sb1 mmu-miR-675-5p 102 125 UGACACC-CGGGA-AAGGCGUGGU ||||| ||| |||| |||| UCUGUGUCGCCAGGUUCC-CACCU Shkbp1; Sb1 mmu-miR-680 101 122 GGGGGUACAGUCGUCUACGGG- :|::||||: |||:| ||| -AUCUGUGUCGCCAGGUUCCCA Shkbp1; Sb1 mmu-miR-681 60 92 -UCGACGGA------CGGUCG----CUCCGAC :||| ||| ||||| |:|||| GGGCUUCCUGUUGGAGCCAGGGCCAGGGGCUC Shkbp1; Sb1 mmu-miR-689 40 65 -CCUGGGGC--GGCUCG-CCCCUGC ||||:: | |:|:| ||||:| GGGACUUGGAACUGGGGAGGGGGCU Shkbp1; Sb1 mmu-miR-702 38 65 CUCGCCCCA----UU---UCCCA--CCCGU |||| :| :||| |||| ---AGGGGACUUGGAACUGGGGAGGGGGCU Shkbp1; Sb1 mmu-miR-705 109 132 ACGGGU--GGGGUGGAGGGUGG- ||| :||||||||:| || CGCCAGGUUCCCACCUCUCUCCU Shkbp1; Sb1 mmu-miR-710 25 50 GAGUUGAGAGGGGU--UCUGAACC- | :||| :|||| :||||||| GUGGACUGGUCCCAGGGGACUUGGA Shkbp1; Sb1 mmu-miR-711 100 122 GAAUGUAGAG--AGGGGCCC-AGGG- |||| || || || |||| ----AAUCUGUGUCGCCAGGUUCCCA Shkbp1; Sb1 mmu-miR-713 13 29 CGACACACGGAAGU-CACGU |||||||||| ||| ---AUGUGCCUUCAUGUGG- Shkbp1; Sb1 mmu-miR-758 24 42 AUCACCUGGUCCAGUGUUU- ||||||: |||| ||:: -UGUGGACU-GGUCCCAGGG Shkbp1; Sb1 mmu-miR-762 102 127 CGAGACAG-GG-CC-GGGGUCGGGG- || |||| || || :|||| ||:| UCUGUGUCGCCAGGUUCCCA-CCUCU Shkbp1; Sb1 mmu-miR-764-3p 5 24 UGUCAACGGUGA-UAC-CGGAGGA ||||| ||| ||||:| -----AGCCACCAAUGUGCCUUCA Shkbp1; Sb1 mmu-miR-770-3p 86 124 GGUCGAGG--------------U-GCAGUCC--GGGUGC :||||| : || |||| ||||| -GGGCUCCUUGGUGUAAUCUGUGUCGCCAGGUUCCCACC Shkbp1; Sb1 mmu-miR-92 78 104 GUCCGG-CCCUGU----UCACGUUAU :|||| |||:| :|||:||| AGGGCCAGGGGCUCCUUGGUGUAAUC Shkbp1; Sb1 mmu-miR-149 73 80 ---------------CCUCACUUCUGU------GCCUCGGUCU ||:| |::|:| :||||||||: AGGGGACUUGGAACUGGGGAGGGGGCUUCCUGUUGGAGCCAGGG Shkbp1; Sb1 mmu-miR-328 78 85 ----------UGCCUUCCC-G--------UCUC--UCCCGGUC : |||:||| | :||| |||||||| ACUUGGAACUGGGGAGGGGGCUUCCUGUUGGAGCCAGGGCCAGG Shkbp1; Sb1 mmu-miR-331 36 43 -------------------AAGAU--CCUAUCC-GGGUCCCCG ||| ||| || |||||||| AUCUAGCCACCAAUGUGCCUUCAUGUGGACUGGUCCCAGGGGA Shkbp1; Sb1 mmu-miR-331 82 89 AA--GAUCCUA--UCCG------------------GGUCCCCG ||:||: :||| |||||||| GGAACUGGGGAGGGGGCUUCCUGUUGGAGCCAGGGCCAGGGGCU Shkbp1; Sb1 mmu-miR-490 111 118 G---UCGUACCUC-AGGA-----------------GGUCCAAC :|| ||:| |||| ||||||| CCAGGGCCAGGGGCUCCUUGGUGUAAUCUGUGUCGCCAGGUUC Shkbp1; Sb1 mmu-miR-671 61 68 GGA-GGUCGGGGAGG------------------UCCCGAAGGA | |:||| :||||||||| UGGACUGGUCCCAGGGGACUUGGAACUGGGGAGGGGGCUUCCUG Shkbp1; Sb1 mmu-let-7a 134 158 uGAUAU---GUU--GGAUGAUGGAGu ||| | ||| || ||||:||| tCTAAAAGCCAAAGCC-ACTATCTCc Shkbp1; Sb1 mmu-let-7c 140 158 UUGGUAUGUUGGAUGAUGGAGu |:||| || | ||||:||| AGCCA---AAGCCACTATCTCc Shkbp1; Sb1 mmu-let-7i 138 158 UGUCGUGUUUGAUGAUGGAGu | ||| ||:| ||||:||| AAAGCCAAAGCCACTATCTCc Shkbp1; Sb1 mmu-miR-124a 2 22 ccguaaGUGG-CGCACGGAAu |||| :||||||| tctagcCACCAATGTGCCTTc Shkbp1; Sb1 mmu-miR-125a 64 88 gugucCAAUUUC---CCAGAGUCCCu |||::|| || | ||||| ttcctGTTGGAGCCAGGGC-CAGGGg Shkbp1; Sb1 mmu-miR-127 75 94 CGGUUCGAGUCUGCCUAGGcu ||||:| |||: || ||| GCCAGGGCCAGG-GGCTCCtt Shkbp1; Sb1 mmu-miR-129-3p 44 65 uacgaaaaACCCCAUUCCCGAA ||||| ::|||||| cttggaacTGGGGAGGGGGCTT Shkbp1; Sb1 mmu-miR-132 7 35 GCUGG-UAC-CG-----ACAUCUGACAAu | ||| ||| || |||:||||| | CCACCAATGTGCCTTCATGTGGACTGGTc Shkbp1; Sb1 mmu-miR-133a 26 47 ugucGACCAACUUCCCCUGguu ||||| ||||||| tggaCTGGTCCCAGGGGACttg Shkbp1; Sb1 mmu-miR-133b 26 47 AUC-GACCAACUUCCCCUGguu |:| ||||| ||||||| TGGACTGGTCCCAGGGGACttg Shkbp1; Sb1 mmu-miR-145 38 56 UUCCCUAAGGACCCUUUUGACCug |:|||| |:||| |||||| AGGGGA--CTTGG---AACTGGgg Shkbp1; Sb1 mmu-miR-149 53 80 CCUCACUUCUG------UGCCUCGGUCu ||:| |::|:| :|||||||| GGGGAGGGGGCTTCCTGTTGGAGCCAGg Shkbp1; Sb1 mmu-miR-185 142 159 cuugaCGGAAAGAGAGGU ||| | |||||| ccaaaGCCACTATCTCCA Shkbp1; Sb1 mmu-miR-193 57 87 gaCCCUGAA--ACA--------UCCGGUCaa |||:||| ||| :|||||| agGGGGCTTCCTGTTGGAGCCAGGGCCAGgg Shkbp1; Sb1 mmu-miR-199a 34 55 cuuGUCCAUCAGACUUGUGACCC |||| :| || :: |||||| tccCAGG-GGACTTGGAACTGGG Shkbp1; Sb1 mmu-miR-199b 34 55 cuuGUCCAUCAGAUUUGUGACCC |||| :| || :: |||||| tccCAGG-GGACTTGGAACTGGG Shkbp1; Sb1 mmu-miR-207 38 60 cuCCCUCCUCUCGGUCCUCUUCg |||| |: | ||:||:| agGGGACTTGGAACTGGGGAGGg Shkbp1; Sb1 mmu-miR-224 26 47 AUUUGCCUUGGUGAUCACUGAAu |::|| |: || | :| ||||| TGGACTGGTCC-CAGGGGACTTg Shkbp1; Sb1 mmu-miR-24 61 84 gacAAGGACGACUU--GACUCGGU ||||||:||:| | |:|||| ggcTTCCTGTTGGAGCCAGGGCCA Shkbp1; Sb1 mmu-miR-25 76 103 aGU-CUGG-CUCUG----UUCACGUUAc || |:|| |:|:| :|||:||| cCAGGGCCAGGGGCTCCTTGGTGTAATc Shkbp1; Sb1 mmu-miR-27a 38 57 cgCCUUGAAUCGGUGACACUU ||:||||:| |||| |:| agGGGACTTGG-AACTGGGGA Shkbp1; Sb1 mmu-miR-28 74 94 gaGUUAUCUGACACUCGAGGAA | | :| | | |:||||||| agCCAGGGCCAG-GGGCTCCTT Shkbp1; Sb1 mmu-miR-296 69 92 uguCCUAACUCCC---CCCCGGGa ||| |||| |||||:| gttGGAGCCAGGGCCAGGGGCTCc Shkbp1; Sb1 mmu-miR-296 44 68 uguCC-UAACUCC-CCCCCG--GGA || | ||:|| |||||| ||| cttGGAACTGGGGAGGGGGCTTCCT Shkbp1; Sb1 mmu-miR-302b* 57 76 UCUUUCGUAAGGGUACAAUUUCa ||:::|| |||| ||||::|| AGGGGGC-TTCC--TGTTGGAGc Shkbp1; Sb1 mmu-miR-323 84 106 UCUCC-AGCUGGCACAUUACACg ||:|| || : ||||||| || AGGGGCTCCTTGGTGTAATCTGt Shkbp1; Sb1 mmu-miR-324-3p 66 88 GGUCGUCGU-GGACCCCGUCACC || |: | | || ||| ||| || CCTGTTGGAGCCAGGGCCAGGGG Shkbp1; Sb1 mmu-miR-328 53 85 ugCCUUCCC---------GUCUC--UCCCGGUC |||:||| ::||| |||||||| ggGGAGGGGGCTTCCTGTTGGAGCCAGGGCCAG Shkbp1; Sb1 mmu-miR-331 64 89 AAG---AUCCU--AUCCGGGUCCCCG ||| | ||| ||| |||||||| TTCCTGTTGGAGCCAGGGCCAGGGGC Shkbp1; Sb1 mmu-miR-331 20 43 AAG-AU-CCU-AUCCGGGUCCCCg ||| |: ||| |:| |||||||| TTCATGTGGACTGGTCCCAGGGGa Shkbp1; Sb1 mmu-miR-337 58 80 uuuCCGUAGUAUAUCCUCGacuu ||| || |:| ||||| gggGGCTTCCTGTTGGAGCcagg Shkbp1; Sb1 mmu-miR-351 77 99 GUCCGAGUUUCCCGAGGAGUCCCu |||| | |:||||||||::| | CAGG-GCCAGGGGCTCCTTGGTGt Shkbp1; Sb1 mmu-miR-423 35 57 gacUCCCCGGAGUC-UGGCUCga ||||| ||::| ||:|:| cccAGGGGACTTGGAACTGGGga Shkbp1; Sb1 mmu-miR-449 150 176 UGGUCGA--UUGUUAU----GUGACGGu ||:| || ||:|| | ||||||| ACTATCTCCAATAAAACCGTCACTGCC- Shkbp1; Sb1 mmu-miR-450b* 19 40 uACGUACGUUUUACAAGGGUua | ||||:::| || ||||| cTTCATGTGGACTGGTCCCAgg Shkbp1; Sb1 mmu-miR-455-3p 8 35 ucacaUAUACGG----GCACCUGACgua ||:|||| :|||||||| caccaATGTGCCTTCATGTGGACTGgtc Shkbp1; Sb1 mmu-miR-464 30 50 auagAGUGUCUUAUUUGAACCau || |||: ::|||||| ctggTCCCAGG--GGACTTGGaa Shkbp1; Sb1 mmu-miR-469 39 64 CCUGUGGUUCUAGUUACUUUCUCCGu ||: ||: :|| | : |:|:|:||| GGGGACTTGGAACTGGGGAGGGGGCt Shkbp1; Sb1 mmu-miR-483 38 64 UGUUCUG--CCCU--CCCCUCCUCacu | ::||| || | |||||||:| AGGGGACTTGGAACTGGGGAGGGGgct Shkbp1; Sb1 mmu-miR-484 51 80 uAGCCCUCCCCUGA--------CUCGGACu | ||||||||:|| ||||| | cTGGGGAGGGGGCTTCCTGTTGGAGCCAGg Shkbp1; Sb1 mmu-miR-490 98 118 gucguacCUCAGGAGGUCCAAc | || | ||||||| gtaatctGTGT-CGCCAGGTTc Shkbp1; Sb1 mmu-miR-490 67 89 GUCGUACCUCAGG---AGGUCCaac | |: ||||| || ||||| CTGT-TGGAG-CCAGGGCCAGGggc Shkbp1; Sb1 mmu-miR-500 70 91 gACUUGGGAACGGGUCCACGua ||:| || | ||||| || tTGGAGCCAGGGCCAGGGGCtc Shkbp1; Sb1 mmu-miR-540 111 131 GGUCCUA-GCUGGAGACUGGA ||||| | | |||||| ||| CCAGGTTCCCACCTCTCTCCT Shkbp1; Sb1 mmu-miR-542-5p 19 41 GCACUGUACU--ACUAGGGGCUC | | |::||: ||:|||| |:| CTTCATGTGGACTGGTCCCAGGG Shkbp1; Sb1 mmu-miR-546 99 114 cUGAGGCACGGUGGUa | ||:|||:|:||| tAATCTGTGTCGCCAg Shkbp1; Sb1 mmu-miR-615 71 94 uuCUCCCUCUGGGU--CCGAGccu ||| ||: ||| ||||| tgGAGCCAGGGCCAGGGGCTCctt Shkbp1; Sb1 mmu-miR-652 95 115 aCGUGUUGGGAUCACCGCGGUaa |:::||:|: ||| ||||| gGTGTAATCT--GTGTCGCCAgg Shkbp1; Sb1 mmu-miR-665 76 97 auUCCCUGGAGUCGGAGG-ACCA |||| || :| |||| |||| ccAGGG-CCAGGGGCTCCTTGGT Shkbp1; Sb1 mmu-miR-665 50 71 auuCCCUGGAGUCGGAGGACca |||: :||:||||| actGGGGAGGGGGCTTCCTGtt Shkbp1; Sb1 mmu-miR-671 45 68 ggaggucggggagguCCCGAAGGA ||||||||| ttggaactggggaggGGGCTTCCT Shkbp1; Sb1 mmu-miR-672 107 126 guGUGUGUCAUGUGGUUGGAGu |:| ||| :: || ||||| gtCGC-CAG-GTTCCCACCTCt Shkbp1; Sb1 mmu-miR-680 100 120 gggGGUACAGUCGUCUACGGG |::||||: |||:| ||| aatCTGTGTCGCCAGGTTCCC Shkbp1; Sb1 mmu-miR-681 61 91 uCGACGGA------CGGUC---G-CUCCGAc ||| ||| ||||| | |:|||| gGCTTCCTGTTGGAGCCAGGGCCAGGGGCTc Shkbp1; Sb1 mmu-miR-689 27 45 CCUGGGGCGGCUCGCCCCUGc ||||: || | |||||| GGACTGGTCCCA--GGGGACt Shkbp1; Sb1 mmu-miR-702 48 64 CUCGCCCCAUUUCCCACCCGu || | ||| | || |||| GAACTGGGGA---GG-GGGCt Shkbp1; Sb1 mmu-miR-705 106 123 ACGGGUGGGGUGGAGGGUGG ||:| || : :||||||| TGTC--GCCAGGTTCCCACC Shkbp1; Sb1 mmu-miR-711 96 119 gaaugUAG--AGAGGGGCCCAGGG ||| | || || |||:|| gtgtaATCTGTGTCGCCAGGTTCC Shkbp1; Sb1 mmu-miR-713 10 29 cgacACACGGAAGU-CACgu |||||||||| ||| ccaaTGTGCCTTCATGTGga Shkbp1; Sb1 mmu-miR-758 23 40 auCACCUGGUCCAGUGUuu ||||||: |||| || atGTGGACT-GGTCCCAgg Shkbp1; Sb1 mmu-miR-762 100 121 cgAGACAGGGCCGGGGUC---GGGg ||||| :|| |||| ||| aaTCTGTGTCG---CCAGGTTCCCa Shkbp1; Sb1 mmu-miR-764-3p 1 23 ugucAACGGU-GAUAC-CGGAGGa | |||| | ||| ||||:| -atcTAGCCACCAATGTGCCTTCa Shkbp1; Sb1 mmu-miR-770-3p 100 123 ggucgagguGCAGUCC--GGGUGc || |||| ||||| aatctgtgtCGCCAGGTTCCCACc Shkbp1; Sb1 mmu-miR-92 77 103 GU-CCGG-CCCUG----UUCACGUUAu || |||| |||:| :|||:||| CAGGGCCAGGGGCTCCTTGGTGTAATc

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Shkbp1 RAID00048306 mmu-miR-490-3p miRNA MIMAT0003780 Shkbp1 mRNA 192192 Prediction 0.1828 Shkbp1 RAID00205339 mmu-miR-7012-5p miRNA MIMAT0027928 Shkbp1 mRNA 192192 Prediction 0.1828 Shkbp1 RAID00312003 mmu-miR-882 miRNA MIMAT0004847 Shkbp1 mRNA 192192 Prediction 0.1828 Shkbp1 RAID00798604 mmu-miR-124-3p miRNA MIMAT0000134 Shkbp1 mRNA 192192 RIP-seq//CLIP-seq//RNA-seq//Prediction 0.7845 Shkbp1 RAID01203639 mmu-miR-34a-5p miRNA MIMAT0000542 Shkbp1 mRNA 192192 Prediction 0.1828 Shkbp1 RAID02124329 mmu-miR-449c-5p miRNA MIMAT0003460 Shkbp1 mRNA 192192 Prediction 0.2202 Shkbp1 RAID02189803 mmu-miR-8119 miRNA MIMAT0031425 Shkbp1 mRNA 192192 Prediction 0.1828 Shkbp1 RAID02352389 mmu-miR-7057-5p miRNA MIMAT0028018 Shkbp1 mRNA 192192 Prediction 0.1828 Shkbp1 RAID02946098 mmu-miR-96-5p miRNA MIMAT0000541 Shkbp1 mRNA 192192 Prediction 0.1828 Shkbp1 RAID02998039 mmu-miR-182-5p miRNA MIMAT0000211 Shkbp1 mRNA 192192 Prediction 0.1828 Shkbp1 RAID03001373 mmu-miR-9-5p miRNA MIMAT0000142 Shkbp1 mRNA 192192 Prediction 0.1828 Shkbp1 RAID03144052 mmu-miR-449a-5p miRNA MIMAT0001542 Shkbp1 mRNA 192192 Prediction 0.1828 Shkbp1 RAID03232934 mmu-miR-6395 miRNA MIMAT0025146 Shkbp1 mRNA 192192 Prediction 0.1828 Shkbp1 RAID03329169 mmu-miR-34b-5p miRNA MIMAT0000382 Shkbp1 mRNA 192192 Prediction 0.1828 Shkbp1 RAID03409329 mmu-miR-8113 miRNA MIMAT0031419 Shkbp1 mRNA 192192 Prediction 0.1828 Shkbp1 RAID03502606 mmu-miR-449b miRNA MIMAT0005447 Shkbp1 mRNA 192192 Prediction 0.1828 Shkbp1 RAID03518690 mmu-miR-34c-5p miRNA MIMAT0000381 Shkbp1 mRNA 192192 Prediction 0.1828 Shkbp1 RAID04036963 mmu-miR-185-5p miRNA MIMAT0000214 Shkbp1 mRNA 192192 Prediction 0.1828 Shkbp1 RAID04711407 G730013B05Rik lncRNA 619312 Shkbp1 protein 192192 Microarray//RNA-seq 0.6606