DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000561 rno-miR-327 311670 Cstf1 uggGAGUACGGGGAGU-UCc ||||| |:||||| || agaCUCAUUCUCCUCACAGa 2 17 1644 1663 [rn4:3:163298319-163298338:+] 0.5204 132 0 -19.79 -0.5256 MIMAT0000599 rno-miR-349 311670 Cstf1 ucUCCAAUUCU-GUCGUCCCGAc :|| ::|| : ||||||| aaGGGCCGGGAGUUUCAGGGCUg 2 21 1493 1515 [rn4:3:163298168-163298190:+] 0.5172 143 7 -23.16 -0.1152 MIMAT0004721 rno-miR-30b-3p 311670 Cstf1 cuGCAUUUGUAGGUGU-AGGGUc :|| || ||||| ||||| ucUGUUCCCACCCACACUCCCAg 2 21 1393 1415 [rn4:3:163298068-163298090:+] 0.5172 128 0 -23.05 -0.1254 MIMAT0000893 rno-miR-290 311670 Cstf1 uuuUUCACGGGGGUAUCAA-ACUc |||| :|| |||| ||| aguAAGUCAGUCCCGAGUUGUGAg 2 21 1100 1123 [rn4:3:163297775-163297798:+] 0.5026 120 0 -18.51 -0.1814 MIMAT0000899 rno-miR-297 311670 Cstf1 guaCGUAUGUACGU-GUGUA-UGUa || || ||:| ||||| ||| cccGC-UAAUUGUACCACAUAACAc 2 21 1668 1691 [rn4:3:163298343-163298366:+] 0.5324 121 0 -10.56 -0.2395 MIMAT0003115 rno-miR-207 311670 Cstf1 uucccuccuCUCGGUCCUCUUCg | ||| ||||||| ucaacucucGUGCCUGGAGAAGg 2 15 264 286 [rn4:3:163296939-163296961:+] 0.5595 154 7 -17.51 -0.2483 MIMAT0003378 rno-miR-378* 311670 Cstf1 uguguccUGGACCUCAGUCCUc |:||| ||||||| aauuuauAUCUG--GUCAGGAu 2 16 1709 1728 [rn4:3:163298384-163298403:+] 0.5445 148 7 -15.78 -0.3989 MIMAT0005285 rno-miR-877 311670 Cstf1 ggGACGCGGUAGAGGAGAUg :||| |: :||||||| cuUUGCUCUUCUUCCUCUAg 2 19 1325 1344 [rn4:3:163298000-163298019:+] 0.5172 154 7 -20.41 -0.1461 MIMAT0005288 rno-miR-880 311670 Cstf1 agaugaGUCUUACUUACC-UCAu |||||| |||| ||| gaaggaCAGAAU--AUGGAAGUa 2 17 282 302 [rn4:3:163296957-163296977:+] 0.5595 121 0 -15.36 -0.5628 MIMAT0005327 rno-miR-672 311670 Cstf1 agUGUGUGUC-AUGUGGUUGGAGu | :| ||| |:|| ||||||| uaAAGCUCAGAUGCA-CAACCUCa 2 22 481 503 [rn4:3:163297156-163297178:+] 0.5666 158 7 -21.62 -0.6280 MIMAT0005330 rno-miR-674-3p 311670 Cstf1 aaCAAGA-CUCUA-CCCUCGACAc ||| | |: :| ||||||| ugGUUGUAGGCGUAAAGAGCUGUa 2 21 1168 1191 [rn4:3:163297843-163297866:+] 0.5026 142 7 -13.57 -0.8308 MIMAT0012824 rno-miR-513 311670 Cstf1 uacuuucUGUGGAAGAACACUu :|| : ||||||| gggugcuGCAGUCACUUGUGAa 2 16 1428 1449 [rn4:3:163298103-163298124:+] 0.5172 143 7 -13.12 -0.7268 MIMAT0012826 rno-miR-220 311670 Cstf1 ucCAGAGACUGUGACACCACc | ||: ||: :||||||| cuGCCUUGGAU-UUGUGGUGg 2 20 116 135 [rn4:3:163296791-163296810:+] 0.5595 153 7 -21.99 -0.3048 MIMAT0012843 rno-miR-876 311670 Cstf1 accacuAAGUGUCUCUU-UAGGu | | || |||| |||| ucauucUCCUCACAGAACAUCCc 2 17 1648 1670 [rn4:3:163298323-163298345:+] 0.5204 120 0 -12.76 -0.2289 MIMAT0012847 rno-miR-293 311670 Cstf1 guUUCACAGU-GUGUCAAACUCa ||| || :| ||||||| aaAAGCCGCAUUAACGUUUGAGc 2 21 1595 1617 [rn4:3:163298270-163298292:+] 0.5172 147 7 -14.74 -0.1450 MIMAT0012847 rno-miR-293 311670 Cstf1 guUUCA--CAGUGUGUCAA-ACUCa |||| ||| |: |||| |||| guAAGUCAGUCCCG-AGUUGUGAGa 2 21 1101 1124 [rn4:3:163297776-163297799:+] 0.5026 125 0 -12.88 -0.1784 MIMAT0012850 rno-miR-465 311670 Cstf1 guguGGUCGUGGCAAGAUUUAu |:||| |:| ||||||| gaucCUAGC-CUGGUCUAAAUa 2 19 716 736 [rn4:3:163297391-163297411:+] 0.5089 160 7 -18.75 -0.1254 MIMAT0000575 rno-miR-335 311670 Cstf1 uguaaaaagcaauaaCGAGAACu ||||||| cacaccuuaaucccaGCUCUUGa 2 9 666 688 [rn4:3:163297341-163297363:+] 0.5089 140 7 -13.28 -0.2699 MIMAT0000575 rno-miR-335 311670 Cstf1 uguaaaaAGCAAUAACGAGA-ACu || |:||||||| || ucuagagUCCCUGUUGCUCUCUGg 2 17 1340 1363 [rn4:3:163298015-163298038:+] 0.5172 124 0 -14.64 -0.2397 MIMAT0000583 rno-miR-339-5p 311670 Cstf1 gcacUCGAGGACCU---CCUGUCCCu |||| |||| |||||||| agaaAGCUGAUGGACAGGGACAGGGa 2 20 1277 1302 [rn4:3:163297952-163297977:+] 0.5172 162 7 -29.71 -0.1247 MIMAT0000790 rno-miR-21 311670 Cstf1 agUUGUAGU--CA-GAC---UA-UUCGAu :|||||| || ||| || ||||| guGACAUCAUCGUCCUGGUAAUAAAGCUc 2 21 460 488 [rn4:3:163297135-163297163:+] 0.5666 121 0 -18.10 -0.2693 MIMAT0000792 rno-miR-23a 311670 Cstf1 ccuuuAGGGACCGUUACACUa |:::| :|||||| guuguUUUUUAAAGAUGUGAu 2 17 1739 1759 [rn4:3:163298414-163298434:+] 0.5445 128 6 -10.03 -0.1331 MIMAT0000793 rno-miR-23b 311670 Cstf1 ccAUUAGGGACCGUUACACUa |: |:::| :|||||| guUGUUUUUUAAAGAUGUGAu 2 20 1739 1759 [rn4:3:163298414-163298434:+] 0.5445 131 6 -10.48 -0.1331 MIMAT0000798 rno-miR-27b 311670 Cstf1 cgUCUUGA-AUCGGUG-ACACUu :| :|| ||:||| ||||| agGGUGCUGCAGUCACUUGUGAa 2 20 1427 1449 [rn4:3:163298102-163298124:+] 0.5172 122 0 -18.44 -0.7212 MIMAT0000799 rno-miR-27a 311670 Cstf1 cgCCUUGA-AUCGGUG-ACACUu || :|| ||:||| ||||| agGGUGCUGCAGUCACUUGUGAa 2 20 1427 1449 [rn4:3:163298102-163298124:+] 0.5172 126 0 -21.14 -0.7212 MIMAT0000812 rno-miR-33 311670 Cstf1 acGUUACGUUGAUGU-UACGUg :||| |:|| || ||||| ggUAAUAAAGCU-CAGAUGCAc 2 20 476 496 [rn4:3:163297151-163297171:+] 0.5666 121 0 -17.61 -0.3000 MIMAT0000817 rno-miR-93 311670 Cstf1 gauggaCGUGCUUGUC-GUGAAAc |::: ||| | |||||| caauaaGUGUUAACUGACACUUUu 2 18 1202 1225 [rn4:3:163297877-163297900:+] 0.5172 121 6 -10.61 -0.6107 MIMAT0000844 rno-miR-138 311670 Cstf1 gccGGACUAAGU--GUUGUGGUCGa ::||:| :: | ||||||| gauUUUGGUGUGGUCUUCACCAGCu 2 21 212 236 [rn4:3:163296887-163296911:+] 0.5595 143 7 -24.02 -0.3276 MIMAT0000848 rno-miR-142-3p 311670 Cstf1 agguauuucauccuUUGUGAUGu :||||||| ugcucucuggcuauGACACUACa 2 10 1354 1376 [rn4:3:163298029-163298051:+] 0.5172 141 7 -13.26 -0.2904 MIMAT0000849 rno-miR-143 311670 Cstf1 acucGAUGUCAC-GAAGUAG-AGu ||: :||| | ||||| || cuucCUGAGGUGACAUCAUCGUCc 2 19 451 474 [rn4:3:163297126-163297149:+] 0.5631 121 0 -13.64 -0.2266 MIMAT0000855 rno-miR-153 311670 Cstf1 cuAGUGAAAACACUGAUAC-GUu |::| | | ||:||||| || ugUUGC-UCUCUGGCUAUGACAc 2 21 1351 1372 [rn4:3:163298026-163298047:+] 0.5172 122 0 -10.96 -0.1306 MIMAT0000856 rno-miR-154 311670 Cstf1 gcuuccguuGUGCCUAUUGGAu || ||||||||| auaucugguCA-GGAUAACCUu 2 14 1714 1734 [rn4:3:163298389-163298409:+] 0.5445 151 7 -16.93 -0.1878 MIMAT0000862 rno-miR-185 311670 Cstf1 aguccuUGACGGAA--AGAGAGGu :||||||| ||||||| ucucucGCUGCCUUCCUCUCUCCu 2 17 1564 1587 [rn4:3:163298239-163298262:+] 0.5172 163 7 -23.83 -0.2297 MIMAT0000892 rno-miR-223 311670 Cstf1 ccccAUAAACUGUUUGACUGu || || : ||||||| gcaaUAAGUG-UUAACUGACa 2 18 1201 1220 [rn4:3:163297876-163297895:+] 0.5172 143 7 -12.96 -1.0826 MIMAT0000896 rno-miR-292-5p 311670 Cstf1 guUUUC-UCGGGGGU-CAAACUCa |||| || :: | ||||||| uaAAAGCCGCAUUAACGUUUGAGc 2 21 1594 1617 [rn4:3:163298269-163298292:+] 0.5172 150 7 -15.31 -0.1464 MIMAT0000896 rno-miR-292-5p 311670 Cstf1 guuUUC--UCGGGGGUCAA-ACUCa ||| ||:||| |||| |||| aguAAGUCAGUCCCGAGUUGUGAGa 2 20 1100 1124 [rn4:3:163297775-163297799:+] 0.5026 134 0 -23.49 -0.1784 MIMAT0003176 rno-miR-539 311670 Cstf1 uguguGGUUCCU--AUUAAAGAgg ::|| || |:|||||| guuuuUUAAAGAUGUGAUUUCUaa 3 18 1742 1765 [rn4:3:163298417-163298440:+] 0.5445 132 0 -7.65 -0.1159 MIMAT0003179 rno-miR-542-3p 311670 Cstf1 aaaGUCAAUAGUUAGACAGUGu ||| |:|| ||||||| gugCAGCUGUC---CUGUCACa 2 20 191 209 [rn4:3:163296866-163296884:+] 0.5595 151 7 -19.66 -0.3002 MIMAT0003194 rno-miR-376c 311670 Cstf1 ugCACU-UUAAAGG-AGAUACAa || | :|| || ||||||| ugGUCAGGAUAACCUUCUAUGUu 2 20 1719 1741 [rn4:3:163298394-163298416:+] 0.5445 149 7 -13.77 -0.5155 MIMAT0003203 rno-miR-485 311670 Cstf1 cuuaaguagugccGGUCGGAGa |||||||| uaaaaggucugucCCAGCCUCa 2 10 1134 1155 [rn4:3:163297809-163297830:+] 0.4880 145 7 -17.25 -0.1199 MIMAT0005314 rno-miR-425 311670 Cstf1 agUUGCCCUCACUAGCACA-GUAa |||| | | | |||| ||| uuAACGUUUGAGCUGGUGUACAUg 2 22 1605 1628 [rn4:3:163298280-163298303:+] 0.5172 121 0 -12.67 -0.1245

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G099305 Cstf1 Rattus norvegicus 311670

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Cstf1 RAID00373820 rno-miR-21-5p miRNA MIMAT0000790 Cstf1 mRNA 311670 Prediction 0.1828 Cstf1 RAID00390112 rno-miR-23b-3p miRNA MIMAT0000793 Cstf1 mRNA 311670 Prediction 0.1828 Cstf1 RAID00394251 rno-miR-185-5p miRNA MIMAT0000862 Cstf1 mRNA 311670 Prediction 0.2202 Cstf1 RAID00467591 rno-miR-425-5p miRNA MIMAT0005314 Cstf1 mRNA 311670 Prediction 0.1828 Cstf1 RAID00706414 rno-miR-138-5p miRNA MIMAT0000844 Cstf1 mRNA 311670 Prediction 0.1828 Cstf1 RAID00737813 rno-miR-27b-3p miRNA MIMAT0000798 Cstf1 mRNA 311670 Prediction 0.1828 Cstf1 RAID00851300 rno-miR-143-3p miRNA MIMAT0000849 Cstf1 mRNA 311670 Prediction 0.1828 Cstf1 RAID01027828 rno-miR-3584-5p miRNA MIMAT0017875 Cstf1 mRNA 311670 Prediction 0.1828 Cstf1 RAID01163070 rno-miR-376c-3p miRNA MIMAT0003194 Cstf1 mRNA 311670 Prediction 0.1828 Cstf1 RAID01353517 rno-miR-1188-5p miRNA MIMAT0017854 Cstf1 mRNA 311670 Prediction 0.1828 Cstf1 RAID01430763 rno-miR-335 miRNA MIMAT0000575 Cstf1 mRNA 311670 Prediction 0.1828 Cstf1 RAID01997303 rno-miR-223-3p miRNA MIMAT0000892 Cstf1 mRNA 311670 Prediction 0.1828 Cstf1 RAID02053145 rno-miR-6325 miRNA MIMAT0025064 Cstf1 mRNA 311670 Prediction 0.1828 Cstf1 RAID02138398 rno-miR-23a-3p miRNA MIMAT0000792 Cstf1 mRNA 311670 Prediction 0.1828 Cstf1 RAID02368860 rno-miR-154-5p miRNA MIMAT0000856 Cstf1 mRNA 311670 Prediction 0.1828 Cstf1 RAID02416573 rno-miR-129-5p miRNA MIMAT0000600 Cstf1 mRNA 311670 Prediction 0.1828 Cstf1 RAID02565931 rno-miR-142-3p miRNA MIMAT0000848 Cstf1 mRNA 311670 Prediction 0.1828 Cstf1 RAID02583927 rno-miR-27a-3p miRNA MIMAT0000799 Cstf1 mRNA 311670 Prediction 0.1828 Cstf1 RAID02952838 rno-miR-93-5p miRNA MIMAT0000817 Cstf1 mRNA 311670 Prediction 0.1828 Cstf1 RAID03079116 rno-miR-292-5p miRNA MIMAT0000896 Cstf1 mRNA 311670 Prediction 0.1828 Cstf1 RAID03452648 rno-miR-542-3p miRNA MIMAT0003179 Cstf1 mRNA 311670 Prediction 0.1828 Cstf1 RAID03557819 rno-miR-33-5p miRNA MIMAT0000812 Cstf1 mRNA 311670 Prediction 0.1828 Cstf1 RAID03619940 rno-miR-485-5p miRNA MIMAT0003203 Cstf1 mRNA 311670 Prediction 0.1828 Cstf1 RAID03661379 rno-miR-153-3p miRNA MIMAT0000855 Cstf1 mRNA 311670 Prediction 0.1828 Cstf1 RAID03730097 rno-miR-339-5p miRNA MIMAT0000583 Cstf1 mRNA 311670 Prediction 0.1828 Cstf1 RAID03925788 rno-miR-539-5p miRNA MIMAT0003176 Cstf1 mRNA 311670 Prediction 0.1828