Klhl41
DNA & RNA Element - microRNA
Mirbase AccmiRNA NameGene IDGene SymbolmiRNA AlignmentAlignmentGene AlignmentmiRNA StartmiRNA EndGene StartGene EndGenome CoordinatesConservationAlign ScoreSeed CatEnergymirSVR Score
MIMAT0000603rno-miR-20a*117537Kbtbd10acauucacgaGCAUUACGUca :| |||||| cuauuauaaaUGAAAUGCAua312306326[rn4:3:51828978-51828998:+]0.54101230-5.69-0.1118
MIMAT0004711rno-miR-21*117537Kbtbd10cugucggguagcUGACGACAAc | ||||||| aagaugacuggaAGUGCUGUUu211410431[rn4:3:51829082-51829103:+]0.55171427-11.25-0.8184
MIMAT0004714rno-miR-26b*117537Kbtbd10cucGGUUCAUUAC---CUC-UUGUCc :|||| :||| ||| ||||| cucUCAAGAGAUGUUUGAGUAACAGa220335360[rn4:3:51829007-51829032:+]0.54101260-15.20-0.8003
MIMAT0004715rno-miR-27a*117537Kbtbd10acgaguguucgucGAUUCGGGa :||||||: guauuguccuucuUUAAGCCUa2105879[rn4:3:51828730-51828751:+]0.52401250-9.43-0.1152
MIMAT0004724rno-miR-99a*117537Kbtbd10gucuGGGUAUCUUUGCUCGAAc |:|||||||:||||||| cuuuCUCAUAGAAGCGAGCUUu219227248[rn4:3:51828899-51828920:+]0.54101827-28.17-0.6742
MIMAT0004725rno-miR-99b*117537Kbtbd10gccuGGGUGUCUGUGCUCGAAc |:||:||| :||||||| cuuuCUCAUAGAAGCGAGCUUu219227248[rn4:3:51828899-51828920:+]0.54101707-23.90-0.6816
MIMAT0003121rno-miR-483117537Kbtbd10ugUUCUGC-CCUCCCCUCCUCACu |||| | | | ||||||| uuAAGAAGUGUAAUAAAGGAGUGu222430453[rn4:3:51829102-51829125:+]0.55171487-15.26-0.8900
MIMAT0003207rno-miR-369-3p117537Kbtbd10uuucuaguugguacAUAAUAa |||||| uuacacuuguuuucUAUUAUa28293313[rn4:3:51828965-51828985:+]0.54101206-2.36-0.2577
MIMAT0005290rno-miR-883117537Kbtbd10uaugacucuCUACA-ACGUCAAu ||| | ||||||| gguuacauuGAUCUGUGCAGUUc21497119[rn4:3:51828769-51828791:+]0.52401487-11.86-0.1965
MIMAT0012824rno-miR-513117537Kbtbd10uacuUUCUGU-GGAAGAACACuu | |||| ||||||| agcuACGACAGGAAUCUUGUGca319379401[rn4:3:51829051-51829073:+]0.55171290-11.92-0.1239
MIMAT0012828rno-miR-362117537Kbtbd10uaaGUGUGGAUCCAAG-GUUC-CUAa :|:::||| || |||| ||| gcaUAUGUCUACACUCUCAAGAGAUg222322347[rn4:3:51828994-51829019:+]0.54101200-13.22-0.7421
MIMAT0012847rno-miR-293117537Kbtbd10guUUCACAG----UGUGUCAAACUCa |:||| | ||||:||||||| ggAGGUGACAAAGACACGGUUUGAGa221227[rn4:3:51828674-51828699:+]0.52401637-23.34-0.2801
MIMAT0012847rno-miR-293117537Kbtbd10guuUCACAG-UGUGU-CAAACUCa | | || | | | ||||||| uacACUCUCAAGAGAUGUUUGAGu220331354[rn4:3:51829003-51829026:+]0.54101457-13.86-0.8223
MIMAT0000796rno-miR-26a117537Kbtbd10ucggaUAGGACCUAAUG-AACUu || : ||:|||| |||| gauucAUGUAGGGUUACAUUGAu21886108[rn4:3:51828758-51828780:+]0.52401250-12.55-0.4602
MIMAT0000797rno-miR-26b117537Kbtbd10uggaUAGGACUUAAUG-AACUu || : |::|||| |||| auucAUGUAGGGUUACAUUGAu21887108[rn4:3:51828759-51828780:+]0.52401210-9.79-0.4602
MIMAT0000804rno-miR-30c117537Kbtbd10cgacucucacaucCUACAAAUGu ||||||||| cuuucuacauccuGAUGUUUACu211245267[rn4:3:51828917-51828939:+]0.54101507-10.23-0.9142
MIMAT0000805rno-miR-30e117537Kbtbd10gaAGGUCAGUUCCUACAAAUGu ||:| : ||||||||| uuUCUACAUCCUGAUGUUUACu221246267[rn4:3:51828918-51828939:+]0.54101527-13.85-0.9109
MIMAT0000806rno-miR-30b-5p117537Kbtbd10ucgacucacaucCUACAAAUGu ||||||||| uuucuacauccuGAUGUUUACu211246267[rn4:3:51828918-51828939:+]0.54101507-10.23-0.9142
MIMAT0000807rno-miR-30d117537Kbtbd10gaAGGUCAGCCCCUACAAAUGu ||:| : ||||||||| uuUCUACAUCCUGAUGUUUACu221246267[rn4:3:51828918-51828939:+]0.54101527-13.85-0.9109
MIMAT0000808rno-miR-30a117537Kbtbd10gaAGGUCAGCUCCUACAAAUGu ||:| : ||||||||| uuUCUACAUCCUGAUGUUUACu221246267[rn4:3:51828918-51828939:+]0.54101527-13.85-0.9109
MIMAT0000819rno-miR-98117537Kbtbd10uugUUAUGUUGAAUGAUG-GAGu |||:|| | |||| ||| ugaAAUGCAUAUGUCUACACUCu220316338[rn4:3:51828988-51829010:+]0.54101230-13.20-0.6564
MIMAT0000864rno-miR-187117537Kbtbd10ggCCGACGUUGUGUUCUGUGCu || |::||| |||||||| -aGGAGGUGACA-AAGACACGg221120[rn4:3:51828673-51828692:+]0.62301627-23.76-0.4331
MIMAT0000876rno-miR-203117537Kbtbd10gauCACCAGGAUU---UGUAAA-GUg || ||:||| |||||| || uuuGUAUUCUUAAGGUACAUUUACAc220273298[rn4:3:51828945-51828970:+]0.54101220-11.55-0.9937
MIMAT0000896rno-miR-292-5p117537Kbtbd10guUUUCUCGGGGGUCAAACUCa ||||| | |:||||||| acAAAGA---CACGGUUUGAGa221927[rn4:3:51828681-51828699:+]0.52401567-17.44-0.2826
MIMAT0000896rno-miR-292-5p117537Kbtbd10guuUUCUCGGGGGUCAAACUCa ||||| : ||||||| cucAAGAGAU----GUUUGAGu220337354[rn4:3:51829009-51829026:+]0.54101427-15.43-0.7945
MIMAT0000896rno-miR-292-5p117537Kbtbd10guUUUCUCG-GGGGUC-AAACUCa ||| | ||||:| |||||| agAAACCUCUCCCCGGUUUUGAGc221358381[rn4:3:51829030-51829053:+]0.54631276-20.50-0.3232
MIMAT0003208rno-miR-374117537Kbtbd10gugaaucguccAACAUAAUAUa || ||||||| uuacacuuguuUUCUAUUAUAa212293314[rn4:3:51828965-51828986:+]0.54101477-8.61-1.0797
MIMAT0005309rno-miR-384-5p117537Kbtbd10uguaacggauccuuaACAAAUGu ||||||| cuuucuacauccugaUGUUUACu29245267[rn4:3:51828917-51828939:+]0.54101407-11.33-0.9109
DNA & RNA Element - TRANSFAC
AccessionASDescriptionSpeciesEntrezPubmedBinding Info
G052186Klhl41Rattus norvegicus117537
DNA & RNA Element - miRNAMap
Gene NameMature miRNATarget StartTarget EndmiRNA 3-5AlignmentTarget 5-3
Klhl41; Kbtbd10; Krp1rno-let-7d319341UGAUACGUU---GGAUGAUG-GAGA ||||| :|||| || |||--AAUGCAUAUGUCUAC-ACUCUCA
Klhl41; Kbtbd10; Krp1rno-miR-107411432ACUAUCGGGACAUGUUACGACGA- |||: ||| |:|||||:|AGAUGA--CUGGA-AGUGCUGUUU
Klhl41; Kbtbd10; Krp1rno-miR-122a317342UGUUUGUGGUAACAG-UGUGAG-GU- |||::| |||| |||||| ||-GAAAUGCAUAUGUCUACACUCUCAA
Klhl41; Kbtbd10; Krp1rno-miR-129*3153UACGAAAAACCCCA--UUCCCGAA |||| ||||| :|||||-GGCUUGUUGGGACAAGAGGGCC-
Klhl41; Kbtbd10; Krp1rno-miR-133a3054UGUCGACCAACU----UCCCCUGGUU :||| ||||: || ||:||-UGGCUUGUUGGGACAAGAGGGCCU-
Klhl41; Kbtbd10; Krp1rno-miR-140*145170ACAGGCA--C-CAAGAUGGGACACCAU ||| | |||:|| | |||||-AUCCCAAGGUGUUUUAGCGUGUGGA-
Klhl41; Kbtbd10; Krp1rno-miR-1501544-GUGACCAUG--UUCC------CAACCCUCU ||| ||| :||| |||||||ACAC-GGUUUGAGAGGUGGCUUGUUGGGAC-
Klhl41; Kbtbd10; Krp1rno-miR-187122GCCGACGUUGUGUUCUGUGCU- || |::||| ||||||||:AGGAGGUGACA-AAGACACGGU
Klhl41; Kbtbd10; Krp1rno-miR-200a100140-UGUAG----------CAAUGGUC--------UGUCACAAU ||||: ||| ||:| |||||||UACAUUGAUCUGUGCAGUUCCCGGGAGAUAAAACAGUGUA-
Klhl41; Kbtbd10; Krp1rno-miR-2041844UCCGUA-UC-CUACUGUUU--CCCUU ||: || |:||:| ||||CGGUUUGAGAGGUGGCUUGUUGGGAC
Klhl41; Kbtbd10; Krp1rno-miR-207132UUCCCUCCUCU----CG--GUC---CUCUUCG- ||||| || | |:| ||||:|:--AGGAGGUGACAAAGACACGGUUUGAGAGGUG
Klhl41; Kbtbd10; Krp1rno-miR-217106139-UAGGUCAGUCAAGGA--CUAC-----GUCAU- |||: ||||||| || ||||:GAUCUGUGCAGUUCCCGGGAGAUAAAACAGUGU
Klhl41; Kbtbd10; Krp1rno-miR-2221236CUCUGGGUCAUCGGUCUACAUCGA- |||| |:|| : ||| ||:|||AAGACACGGUU-UGAGAGGUGGCUU
Klhl41; Kbtbd10; Krp1rno-miR-2241638AUUUGCCUUGGUGAUCACUGAAC- |||| : | :|||:||||--CACGGUUUGAGAGGUGGCUUGU
Klhl41; Kbtbd10; Krp1rno-miR-2888122GAGU-UAUCU-----------GACAC-UCGAGGAA ||| :|||: ||||| ||:|||UUCAUGUAGGGUUACAUUGAUCUGUGCAGUUCCC-
Klhl41; Kbtbd10; Krp1rno-miR-290128UUUUUCACGGGG---GUAUCAAACUC-|::|:||| | || :|||||||AGGAGGUGACAAAGACACGGUUUGAGA
Klhl41; Kbtbd10; Krp1rno-miR-2962756-UGUCCUAACUCCCC------CCCGGGA- : || ||| ||| |||||:|AGGUGGCUUGUUGGGACAAGAGGGCCUUA
Klhl41; Kbtbd10; Krp1rno-miR-30a-3p394425CGACGUUUGUAG----------GCUGACUUUC- :||: :|||: :|||||:|||CUUGU--GCAUUUUAAUGAAGAUGACUGGAAGU
Klhl41; Kbtbd10; Krp1rno-miR-30a-5p228268GAAGG---UCA--GCUC-------------CUACAAAUGU |||: || |||| |||||||||UUUCUCAUAGAAGCGAGCUUUCUACAUCCUGAUGUUUACU
Klhl41; Kbtbd10; Krp1rno-miR-31378400GUCGAUACGGUCG-UAGAACGGA ||||| | ||| ||||||:GAGCUACGACAGGAAUCUUGUG-
Klhl41; Kbtbd10; Krp1rno-miR-320358379AAGCG--GGAGAGUUGGGUCGAAAA | |||||| |||:|:|||--AGAAACCUCUC--CCCGGUUUUG
Klhl41; Kbtbd10; Krp1rno-miR-3281654-UGCC---UUC-CCGUC------------UCUCCCGGUC |||| :|| ||::| ||||||||CACGGUUUGAGAGGUGGCUUGUUGGGACAAGAGGGCCU-
Klhl41; Kbtbd10; Krp1rno-miR-338406430AGUUGUUUUAGUGACU---ACGACCU | ||:|| ||||: |||||-AAUGAAGAUGACUGGAAGUGCUGU-
Klhl41; Kbtbd10; Krp1rno-miR-3392252-ACUCGA----GGACC-UCCUGU---CCCU |||| |:|| :||||| |||UUGAGAGGUGGCUUGUUGGGACAAGAGGGC
Klhl41; Kbtbd10; Krp1rno-miR-3401845-CCGAUA-UUUCAUUG----ACUCUGCCU ||:| :|:||::| ||:|||CGGUUUGAGAGGUGGCUUGUUGGGACA--
Klhl41; Kbtbd10; Krp1rno-miR-34395129AGACCC-GUGUGCCU--------------CCCUCU- ||| :|||: || ||||||--AGGGUUACAUUGAUCUGUGCAGUUCCCGGGAGAU
Klhl41; Kbtbd10; Krp1rno-miR-3472546AC-CCGCUGGGUCUCCCUGU- | ||:|:|::: ||||||AGAGGUGGCUUGUUGGGACAA
Klhl41; Kbtbd10; Krp1rno-miR-3492453-UCUCCA-------AUUCUGUCGUCCCGAC |||||| |::|||| |||||GAGAGGUGGCUUGUUGGGACAAGAGGGCC-
Klhl41; Kbtbd10; Krp1rno-miR-363-3p95120UGUCUACCUAU--------GGCACGUUAA- ||:| |:|||||:||-----AGGGUUACAUUGAUCUGUGCAGUUC
Klhl41; Kbtbd10; Krp1rno-miR-370356383UUGGUCCAAGGU--GGGGUCGU--C-CG- ||| || ||||:|: | ||--ACAGAAACCUCUCCCCGGUUUUGAGCU
Klhl41; Kbtbd10; Krp1rno-miR-376b*424458UUGGUA---UCU----------UCCUUAUAGGUG :|::| ||| ||||:|:||||UGCUGUUUAAGAAGUGUAAUAAAGGAGUGUCCAG
Klhl41; Kbtbd10; Krp1rno-miR-4933756GACCGUGUGUCAUCUGGAAGU ||| ||| || :|:||||UUGGGACA-AGAGGGCCUUA-
Klhl41; Kbtbd10; Krp1rno-miR-542-5p104126GCACUGUACUAC--UAGGGGCUC- |||: || || :|:||||:|-UUGAUCUG-UGCAGUUCCCGGGA
Klhl41; Kbtbd10; Krp1rno-let-7d317338ugaUACGU-UGGAUGAUG-GAGA ||||| |: | |||| ||||gaaATGCATATGT-CTACACTCT
Klhl41; Kbtbd10; Krp1rno-miR-107408430ACUAUCGG--GACAUGUUACGACGA||| || : ||| | |:|||||:|TGA-AGATGACTGGA-AGTGCTGTT
Klhl41; Kbtbd10; Krp1rno-miR-122a316339ugUUUGUGGUA-ACAG-UGUGAGgu |||:: ||| |||| ||||||tgAAATG-CATATGTCTACACTCtc
Klhl41; Kbtbd10; Krp1rno-miR-129*3053uaCGAAAAACCC--CAUUCCCGaa |||| ||||| :|||||tgGCTTGTTGGGACAAGAGGGCct
Klhl41; Kbtbd10; Krp1rno-miR-133a2546UGUCGACCAACUUCCCCUGGUu| || ||| | : ||||| |AGAGGTGGCTTGTTGGGACAAg
Klhl41; Kbtbd10; Krp1rno-miR-140*144170acAGG---CACCAAGAUGGGACACCau ||| | |||:|| | |||||aaTCCCAAGGTGTTTTAGCGTGTGGag
Klhl41; Kbtbd10; Krp1rno-miR-1501644GUGACCAUGUU-----CC---CAACCCUcu||| ||| ::| || |||||||CAC-GGTTTGAGAGGTGGCTTGTTGGGAca
Klhl41; Kbtbd10; Krp1rno-miR-194413433aggUGUACCUCAACGACAAugu || |||| |||||||atgAC-TGGAAGTGCTGTTtaa
Klhl41; Kbtbd10; Krp1rno-miR-200a111140uguagCAAUGGUC--------UGUCACAau ||| ||:| |||||||gtgcaGTTCCCGGGAGATAAAACAGTGTaa
Klhl41; Kbtbd10; Krp1rno-miR-2043052uCCG--UAUCCUACUG-UUUCCCuu ||| :| || ||| |:||||tGGCTTGTTGG--GACAAGAGGGcc
Klhl41; Kbtbd10; Krp1rno-miR-2072247uuCCCUCCUCU---CGGUCCUCUUCg | |||| |: |:::||| |||ttGAGAGGTGGCTTGTTGGGACAAGa
Klhl41; Kbtbd10; Krp1rno-miR-21787118UAGGU-CA-GUCAAGG--AC----UACGUCAu||:|| || :||| | || :||||||ATTCATGTAGGGTTACATTGATCTGTGCAGTt
Klhl41; Kbtbd10; Krp1rno-miR-2241436aUUUGCCUUGGUGAUCACUGAAC | |||| : | :|||:||||gACACGGTTTGAGAGGTGGCTTG
Klhl41; Kbtbd10; Krp1rno-miR-2899122gaguUAUCU-GACAC-UCGAGGaa || || ||||| ||:|||ttacATTGATCTGTGCAGTTCCcg
Klhl41; Kbtbd10; Krp1rno-miR-292-5p339354GUUUUCUCGGGGGUCAAACUCA|||:||| ||||||||CAAGAGA------TGTTTGAGT
Klhl41; Kbtbd10; Krp1rno-miR-2962854uguCCUAAC-UCCC----C-CCCGGGA || ||| ||| | |||||:|ggtGGCTTGTTGGGACAAGAGGGCCTT
Klhl41; Kbtbd10; Krp1rno-miR-30a-3p404423cgacguUUGUAGGCUGACUUUC || || |||||:|||ttaatgAAGAT--GACTGGAAG
Klhl41; Kbtbd10; Krp1rno-miR-31378400gUCGAUACGGU-CGUAGAACgga ||||| | || | ||||||gAGCTACGACAGGAATCTTGtgc
Klhl41; Kbtbd10; Krp1rno-miR-3283354ugccuuCCC-GUCUCUCCCGGuc ||| || ||||||||cttgttGGGACA-AGAGGGCCtt
Klhl41; Kbtbd10; Krp1rno-miR-338404430AGUUG-UUUUAGUGAC---UACGACcu|:||: ||:|| |||| :|||||TTAATGAAGATGACTGGAAGTGCTGtt
Klhl41; Kbtbd10; Krp1rno-miR-3393051ACUCGAGGACCUCCUG---UCCCu|| |||: | | |||| ||||TG-GCTTGTTG-GGACAAGAGGGc
Klhl41; Kbtbd10; Krp1rno-miR-340121ccgaUAUUUCAUUG--ACUCUGCCu | :|:||:|| || ||||----AGGAGGTGACAAAGACACGGt
Klhl41; Kbtbd10; Krp1rno-miR-343108127AGACCCGU---GUGCCUCCCUCU|||| ||| | | ||||||TCTGTGCAGTTCCC---GGGAGA
Klhl41; Kbtbd10; Krp1rno-miR-3473853ACCCGCUGGGUCUCCCUGu||| || | |||||| |TGG--GA-CAAGAGGGCCt
Klhl41; Kbtbd10; Krp1rno-miR-3493253ucucCAAUUCUGUCGUCCCGac |||::|||| |||||gcttGTTGGGACAAGAGGGCct
Klhl41; Kbtbd10; Krp1rno-miR-363-3p99118ugUCUACCUAUGGCACGUUAA | || ||| |:|||||:||ttACATTGAT-CTGTGCAGTT
Klhl41; Kbtbd10; Krp1rno-miR-370367391uuGGUCCAAGG--UGGGGUCGUCCg || ||||:: :|: |: ||||tcCCCGGTTTTGAGCTACGACAGGa
Klhl41; Kbtbd10; Krp1rno-miR-376b*438457uuggUAUCUUCCUUAUAGGUg ||| |||||:|:||||tgtaATA-AAGGAGTGTCCAg
Klhl41; Kbtbd10; Krp1rno-miR-483430453ugUUCUGC-CCUCCCCUCCUCACu |||| | | | |||||||ttAAGAAGTGTAATAAAGGAGTGt
Klhl41; Kbtbd10; Krp1rno-miR-4933756gACCGUGUGUCAUCUGGAAgu ||| ||| || :|:||||tTGGGACA-AGAGGGCCTTaa
Klhl41; Kbtbd10; Krp1rno-miR-542-5p97124gCACUGU-ACU----AC--UAGGGGCUC || ||| ||| || :|:||||:|gGTTACATTGATCTGTGCAGTTCCCGGG
Klhl41; Kbtbd10; Krp1rno-miR-292-5p347354GUU-------------------------UUCUCGGGGGUCAAACUCA ||||| ||||||||UAAAUGAAAUGCAUAUGUCUACACUCUCAAGAGAU----GUUUGAGUA
Klhl41; Kbtbd10; Krp1rno-miR-30a-5p260267------GAAGGUCA--GCUC-------------CUACAAAUGU || :|| |||| |||||||||ACCUUUCUCAUAGAAGCGAGCUUUCUACAUCCUGAUGUUUACU
Klhl41; Kbtbd10; Krp1rno-miR-483446453UGUUCUGCCCUCCCC--------------------UCCUCACU ||| ||| | | |||||||AGAUGACUGGAAGUGCUGUUUAAGAAGUGUAAUAAAGGAGUGU
DNA & RNA Element - RAID2
Gene NameRAID IDInteractor 1Category 1ID 1Interactor 2Category 2ID 2MethodsScore
Klhl41RAID00010871rno-miR-26b-5pmiRNAMIMAT0000797Klhl41mRNA117537Prediction0.1828
Klhl41RAID00359784rno-miR-30d-5pmiRNAMIMAT0000807Klhl41mRNA117537Prediction0.1828
Klhl41RAID00360859rno-miR-384-5pmiRNAMIMAT0005309Klhl41mRNA117537Prediction0.1828
Klhl41RAID01032357rno-miR-30e-5pmiRNAMIMAT0000805Klhl41mRNA117537Prediction0.1828
Klhl41RAID01079329rno-miR-26a-5pmiRNAMIMAT0000796Klhl41mRNA117537Prediction0.1828
Klhl41RAID01196244rno-miR-187-3pmiRNAMIMAT0000864Klhl41mRNA117537Prediction0.1828
Klhl41RAID01268911rno-miR-30a-5pmiRNAMIMAT0000808Klhl41mRNA117537Prediction0.1828
Klhl41RAID01900032rno-miR-374-5pmiRNAMIMAT0003208Klhl41mRNA117537Prediction0.1828
Klhl41RAID01923856rno-miR-30b-5pmiRNAMIMAT0000806Klhl41mRNA117537Prediction0.1828
Klhl41RAID02059336rno-miR-203a-3pmiRNAMIMAT0000876Klhl41mRNA117537Prediction0.1828
Klhl41RAID02350804rno-miR-292-5pmiRNAMIMAT0000896Klhl41mRNA117537Prediction0.1828
Klhl41RAID02595848rno-miR-30c-5pmiRNAMIMAT0000804Klhl41mRNA117537Prediction0.1828
Klhl41RAID03141039rno-miR-98-5pmiRNAMIMAT0000819Klhl41mRNA117537Prediction0.1828