| DNA & RNA Element - miRNAMap |
| Gene Name | Mature miRNA | Target Start | Target End | miRNA 3-5 | Alignment | Target 5-3 |
| Klhl41; Kbtbd10; Krp1 | rno-let-7d | 319 | 341 | UGAUACGUU---GGAUGAUG-GAGA | ||||| :|||| || ||| | --AAUGCAUAUGUCUAC-ACUCUCA |
| Klhl41; Kbtbd10; Krp1 | rno-miR-107 | 411 | 432 | ACUAUCGGGACAUGUUACGACGA- | |||: ||| |:|||||:| | AGAUGA--CUGGA-AGUGCUGUUU |
| Klhl41; Kbtbd10; Krp1 | rno-miR-122a | 317 | 342 | UGUUUGUGGUAACAG-UGUGAG-GU- | |||::| |||| |||||| || | -GAAAUGCAUAUGUCUACACUCUCAA |
| Klhl41; Kbtbd10; Krp1 | rno-miR-129* | 31 | 53 | UACGAAAAACCCCA--UUCCCGAA | |||| ||||| :||||| | -GGCUUGUUGGGACAAGAGGGCC- |
| Klhl41; Kbtbd10; Krp1 | rno-miR-133a | 30 | 54 | UGUCGACCAACU----UCCCCUGGUU | :||| ||||: || ||:|| | -UGGCUUGUUGGGACAAGAGGGCCU- |
| Klhl41; Kbtbd10; Krp1 | rno-miR-140* | 145 | 170 | ACAGGCA--C-CAAGAUGGGACACCAU | ||| | |||:|| | ||||| | -AUCCCAAGGUGUUUUAGCGUGUGGA- |
| Klhl41; Kbtbd10; Krp1 | rno-miR-150 | 15 | 44 | -GUGACCAUG--UUCC------CAACCCUCU | ||| ||| :||| ||||||| | ACAC-GGUUUGAGAGGUGGCUUGUUGGGAC- |
| Klhl41; Kbtbd10; Krp1 | rno-miR-187 | 1 | 22 | GCCGACGUUGUGUUCUGUGCU- | || |::||| ||||||||: | AGGAGGUGACA-AAGACACGGU |
| Klhl41; Kbtbd10; Krp1 | rno-miR-200a | 100 | 140 | -UGUAG----------CAAUGGUC--------UGUCACAAU | ||||: ||| ||:| ||||||| | UACAUUGAUCUGUGCAGUUCCCGGGAGAUAAAACAGUGUA- |
| Klhl41; Kbtbd10; Krp1 | rno-miR-204 | 18 | 44 | UCCGUA-UC-CUACUGUUU--CCCUU | ||: || |:||:| |||| | CGGUUUGAGAGGUGGCUUGUUGGGAC |
| Klhl41; Kbtbd10; Krp1 | rno-miR-207 | 1 | 32 | UUCCCUCCUCU----CG--GUC---CUCUUCG- | ||||| || | |:| ||||:|: | --AGGAGGUGACAAAGACACGGUUUGAGAGGUG |
| Klhl41; Kbtbd10; Krp1 | rno-miR-217 | 106 | 139 | -UAGGUCAGUCAAGGA--CUAC-----GUCAU- | |||: ||||||| || ||||: | GAUCUGUGCAGUUCCCGGGAGAUAAAACAGUGU |
| Klhl41; Kbtbd10; Krp1 | rno-miR-222 | 12 | 36 | CUCUGGGUCAUCGGUCUACAUCGA- | |||| |:|| : ||| ||:||| | AAGACACGGUU-UGAGAGGUGGCUU |
| Klhl41; Kbtbd10; Krp1 | rno-miR-224 | 16 | 38 | AUUUGCCUUGGUGAUCACUGAAC- | |||| : | :|||:|||| | --CACGGUUUGAGAGGUGGCUUGU |
| Klhl41; Kbtbd10; Krp1 | rno-miR-28 | 88 | 122 | GAGU-UAUCU-----------GACAC-UCGAGGAA | ||| :|||: ||||| ||:||| | UUCAUGUAGGGUUACAUUGAUCUGUGCAGUUCCC- |
| Klhl41; Kbtbd10; Krp1 | rno-miR-290 | 1 | 28 | UUUUUCACGGGG---GUAUCAAACUC- | |::|:||| | || :||||||| | AGGAGGUGACAAAGACACGGUUUGAGA |
| Klhl41; Kbtbd10; Krp1 | rno-miR-296 | 27 | 56 | -UGUCCUAACUCCCC------CCCGGGA- | : || ||| ||| |||||:| | AGGUGGCUUGUUGGGACAAGAGGGCCUUA |
| Klhl41; Kbtbd10; Krp1 | rno-miR-30a-3p | 394 | 425 | CGACGUUUGUAG----------GCUGACUUUC- | :||: :|||: :|||||:||| | CUUGU--GCAUUUUAAUGAAGAUGACUGGAAGU |
| Klhl41; Kbtbd10; Krp1 | rno-miR-30a-5p | 228 | 268 | GAAGG---UCA--GCUC-------------CUACAAAUGU | |||: || |||| ||||||||| | UUUCUCAUAGAAGCGAGCUUUCUACAUCCUGAUGUUUACU |
| Klhl41; Kbtbd10; Krp1 | rno-miR-31 | 378 | 400 | GUCGAUACGGUCG-UAGAACGGA | ||||| | ||| ||||||: | GAGCUACGACAGGAAUCUUGUG- |
| Klhl41; Kbtbd10; Krp1 | rno-miR-320 | 358 | 379 | AAGCG--GGAGAGUUGGGUCGAAAA | | |||||| |||:|:||| | --AGAAACCUCUC--CCCGGUUUUG |
| Klhl41; Kbtbd10; Krp1 | rno-miR-328 | 16 | 54 | -UGCC---UUC-CCGUC------------UCUCCCGGUC | |||| :|| ||::| |||||||| | CACGGUUUGAGAGGUGGCUUGUUGGGACAAGAGGGCCU- |
| Klhl41; Kbtbd10; Krp1 | rno-miR-338 | 406 | 430 | AGUUGUUUUAGUGACU---ACGACCU | | ||:|| ||||: ||||| | -AAUGAAGAUGACUGGAAGUGCUGU- |
| Klhl41; Kbtbd10; Krp1 | rno-miR-339 | 22 | 52 | -ACUCGA----GGACC-UCCUGU---CCCU | |||| |:|| :||||| ||| | UUGAGAGGUGGCUUGUUGGGACAAGAGGGC |
| Klhl41; Kbtbd10; Krp1 | rno-miR-340 | 18 | 45 | -CCGAUA-UUUCAUUG----ACUCUGCCU | ||:| :|:||::| ||:||| | CGGUUUGAGAGGUGGCUUGUUGGGACA-- |
| Klhl41; Kbtbd10; Krp1 | rno-miR-343 | 95 | 129 | AGACCC-GUGUGCCU--------------CCCUCU- | ||| :|||: || |||||| | --AGGGUUACAUUGAUCUGUGCAGUUCCCGGGAGAU |
| Klhl41; Kbtbd10; Krp1 | rno-miR-347 | 25 | 46 | AC-CCGCUGGGUCUCCCUGU- | | ||:|:|::: |||||| | AGAGGUGGCUUGUUGGGACAA |
| Klhl41; Kbtbd10; Krp1 | rno-miR-349 | 24 | 53 | -UCUCCA-------AUUCUGUCGUCCCGAC | |||||| |::|||| ||||| | GAGAGGUGGCUUGUUGGGACAAGAGGGCC- |
| Klhl41; Kbtbd10; Krp1 | rno-miR-363-3p | 95 | 120 | UGUCUACCUAU--------GGCACGUUAA- | ||:| |:|||||:|| | -----AGGGUUACAUUGAUCUGUGCAGUUC |
| Klhl41; Kbtbd10; Krp1 | rno-miR-370 | 356 | 383 | UUGGUCCAAGGU--GGGGUCGU--C-CG- | ||| || ||||:|: | || | --ACAGAAACCUCUCCCCGGUUUUGAGCU |
| Klhl41; Kbtbd10; Krp1 | rno-miR-376b* | 424 | 458 | UUGGUA---UCU----------UCCUUAUAGGUG | :|::| ||| ||||:|:|||| | UGCUGUUUAAGAAGUGUAAUAAAGGAGUGUCCAG |
| Klhl41; Kbtbd10; Krp1 | rno-miR-493 | 37 | 56 | GACCGUGUGUCAUCUGGAAGU | ||| ||| || :|:|||| | UUGGGACA-AGAGGGCCUUA- |
| Klhl41; Kbtbd10; Krp1 | rno-miR-542-5p | 104 | 126 | GCACUGUACUAC--UAGGGGCUC- | |||: || || :|:||||:| | -UUGAUCUG-UGCAGUUCCCGGGA |
| Klhl41; Kbtbd10; Krp1 | rno-let-7d | 317 | 338 | ugaUACGU-UGGAUGAUG-GAGA | ||||| |: | |||| |||| | gaaATGCATATGT-CTACACTCT |
| Klhl41; Kbtbd10; Krp1 | rno-miR-107 | 408 | 430 | ACUAUCGG--GACAUGUUACGACGA | ||| || : ||| | |:|||||:| | TGA-AGATGACTGGA-AGTGCTGTT |
| Klhl41; Kbtbd10; Krp1 | rno-miR-122a | 316 | 339 | ugUUUGUGGUA-ACAG-UGUGAGgu | |||:: ||| |||| |||||| | tgAAATG-CATATGTCTACACTCtc |
| Klhl41; Kbtbd10; Krp1 | rno-miR-129* | 30 | 53 | uaCGAAAAACCC--CAUUCCCGaa | |||| ||||| :||||| | tgGCTTGTTGGGACAAGAGGGCct |
| Klhl41; Kbtbd10; Krp1 | rno-miR-133a | 25 | 46 | UGUCGACCAACUUCCCCUGGUu | | || ||| | : ||||| | | AGAGGTGGCTTGTTGGGACAAg |
| Klhl41; Kbtbd10; Krp1 | rno-miR-140* | 144 | 170 | acAGG---CACCAAGAUGGGACACCau | ||| | |||:|| | ||||| | aaTCCCAAGGTGTTTTAGCGTGTGGag |
| Klhl41; Kbtbd10; Krp1 | rno-miR-150 | 16 | 44 | GUGACCAUGUU-----CC---CAACCCUcu | ||| ||| ::| || ||||||| | CAC-GGTTTGAGAGGTGGCTTGTTGGGAca |
| Klhl41; Kbtbd10; Krp1 | rno-miR-194 | 413 | 433 | aggUGUACCUCAACGACAAugu | || |||| ||||||| | atgAC-TGGAAGTGCTGTTtaa |
| Klhl41; Kbtbd10; Krp1 | rno-miR-200a | 111 | 140 | uguagCAAUGGUC--------UGUCACAau | ||| ||:| ||||||| | gtgcaGTTCCCGGGAGATAAAACAGTGTaa |
| Klhl41; Kbtbd10; Krp1 | rno-miR-204 | 30 | 52 | uCCG--UAUCCUACUG-UUUCCCuu | ||| :| || ||| |:|||| | tGGCTTGTTGG--GACAAGAGGGcc |
| Klhl41; Kbtbd10; Krp1 | rno-miR-207 | 22 | 47 | uuCCCUCCUCU---CGGUCCUCUUCg | | |||| |: |:::||| ||| | ttGAGAGGTGGCTTGTTGGGACAAGa |
| Klhl41; Kbtbd10; Krp1 | rno-miR-217 | 87 | 118 | UAGGU-CA-GUCAAGG--AC----UACGUCAu | ||:|| || :||| | || :|||||| | ATTCATGTAGGGTTACATTGATCTGTGCAGTt |
| Klhl41; Kbtbd10; Krp1 | rno-miR-224 | 14 | 36 | aUUUGCCUUGGUGAUCACUGAAC | | |||| : | :|||:|||| | gACACGGTTTGAGAGGTGGCTTG |
| Klhl41; Kbtbd10; Krp1 | rno-miR-28 | 99 | 122 | gaguUAUCU-GACAC-UCGAGGaa | || || ||||| ||:||| | ttacATTGATCTGTGCAGTTCCcg |
| Klhl41; Kbtbd10; Krp1 | rno-miR-292-5p | 339 | 354 | GUUUUCUCGGGGGUCAAACUCA | |||:||| |||||||| | CAAGAGA------TGTTTGAGT |
| Klhl41; Kbtbd10; Krp1 | rno-miR-296 | 28 | 54 | uguCCUAAC-UCCC----C-CCCGGGA | || ||| ||| | |||||:| | ggtGGCTTGTTGGGACAAGAGGGCCTT |
| Klhl41; Kbtbd10; Krp1 | rno-miR-30a-3p | 404 | 423 | cgacguUUGUAGGCUGACUUUC | || || |||||:||| | ttaatgAAGAT--GACTGGAAG |
| Klhl41; Kbtbd10; Krp1 | rno-miR-31 | 378 | 400 | gUCGAUACGGU-CGUAGAACgga | ||||| | || | |||||| | gAGCTACGACAGGAATCTTGtgc |
| Klhl41; Kbtbd10; Krp1 | rno-miR-328 | 33 | 54 | ugccuuCCC-GUCUCUCCCGGuc | ||| || |||||||| | cttgttGGGACA-AGAGGGCCtt |
| Klhl41; Kbtbd10; Krp1 | rno-miR-338 | 404 | 430 | AGUUG-UUUUAGUGAC---UACGACcu | |:||: ||:|| |||| :||||| | TTAATGAAGATGACTGGAAGTGCTGtt |
| Klhl41; Kbtbd10; Krp1 | rno-miR-339 | 30 | 51 | ACUCGAGGACCUCCUG---UCCCu | || |||: | | |||| |||| | TG-GCTTGTTG-GGACAAGAGGGc |
| Klhl41; Kbtbd10; Krp1 | rno-miR-340 | 1 | 21 | ccgaUAUUUCAUUG--ACUCUGCCu | | :|:||:|| || |||| | ----AGGAGGTGACAAAGACACGGt |
| Klhl41; Kbtbd10; Krp1 | rno-miR-343 | 108 | 127 | AGACCCGU---GUGCCUCCCUCU | |||| ||| | | |||||| | TCTGTGCAGTTCCC---GGGAGA |
| Klhl41; Kbtbd10; Krp1 | rno-miR-347 | 38 | 53 | ACCCGCUGGGUCUCCCUGu | ||| || | |||||| | | TGG--GA-CAAGAGGGCCt |
| Klhl41; Kbtbd10; Krp1 | rno-miR-349 | 32 | 53 | ucucCAAUUCUGUCGUCCCGac | |||::|||| ||||| | gcttGTTGGGACAAGAGGGCct |
| Klhl41; Kbtbd10; Krp1 | rno-miR-363-3p | 99 | 118 | ugUCUACCUAUGGCACGUUAA | | || ||| |:|||||:|| | ttACATTGAT-CTGTGCAGTT |
| Klhl41; Kbtbd10; Krp1 | rno-miR-370 | 367 | 391 | uuGGUCCAAGG--UGGGGUCGUCCg | || ||||:: :|: |: |||| | tcCCCGGTTTTGAGCTACGACAGGa |
| Klhl41; Kbtbd10; Krp1 | rno-miR-376b* | 438 | 457 | uuggUAUCUUCCUUAUAGGUg | ||| |||||:|:|||| | tgtaATA-AAGGAGTGTCCAg |
| Klhl41; Kbtbd10; Krp1 | rno-miR-483 | 430 | 453 | ugUUCUGC-CCUCCCCUCCUCACu | |||| | | | ||||||| | ttAAGAAGTGTAATAAAGGAGTGt |
| Klhl41; Kbtbd10; Krp1 | rno-miR-493 | 37 | 56 | gACCGUGUGUCAUCUGGAAgu | ||| ||| || :|:|||| | tTGGGACA-AGAGGGCCTTaa |
| Klhl41; Kbtbd10; Krp1 | rno-miR-542-5p | 97 | 124 | gCACUGU-ACU----AC--UAGGGGCUC | || ||| ||| || :|:||||:| | gGTTACATTGATCTGTGCAGTTCCCGGG |
| Klhl41; Kbtbd10; Krp1 | rno-miR-292-5p | 347 | 354 | GUU-------------------------UUCUCGGGGGUCAAACUCA | ||||| |||||||| | UAAAUGAAAUGCAUAUGUCUACACUCUCAAGAGAU----GUUUGAGUA |
| Klhl41; Kbtbd10; Krp1 | rno-miR-30a-5p | 260 | 267 | ------GAAGGUCA--GCUC-------------CUACAAAUGU | || :|| |||| ||||||||| | ACCUUUCUCAUAGAAGCGAGCUUUCUACAUCCUGAUGUUUACU |
| Klhl41; Kbtbd10; Krp1 | rno-miR-483 | 446 | 453 | UGUUCUGCCCUCCCC--------------------UCCUCACU | ||| ||| | | ||||||| | AGAUGACUGGAAGUGCUGUUUAAGAAGUGUAAUAAAGGAGUGU |