DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004718 rno-miR-29a* 305451 Tnip2 gacuugugguuuucUUUAGUCa ||||||| acaaggaugacuucAAAUCAGa 2 9 177 198 [rn4:14:81885154-81885175:+] 0.5807 140 7 -9.75 -0.6287 MIMAT0004723 rno-miR-34c* 305451 Tnip2 ggACCGAC-ACACCAA-UCACUAa || ||| ||| || |||||| auUGCCUGCGGUGUUUCAGUGAUg 2 21 480 503 [rn4:14:81887578-81887601:+] 0.6023 131 6 -17.76 -0.2757 MIMAT0004731 rno-miR-125b* 305451 Tnip2 ucCAGGGUUCUC---GGACUGAACa ||: :::||| :|||||||| cuGUUGUGGGAGUAUUCUGACUUGc 2 21 763 787 [rn4:14:81887861-81887885:+] 0.5106 155 7 -22.12 -0.1051 MIMAT0004738 rno-miR-199a-3p 305451 Tnip2 auUGGUUACACGUCUGAUGACa |: |||| : ||||||| uaAUAAAUGGAUUUACUACUGu 2 21 1049 1070 [rn4:14:81888147-81888168:+] 0.5156 152 7 -14.76 -1.1269 MIMAT0004739 rno-miR-204* 305451 Tnip2 uugcagggaaacgGAAGGGUCg :||||||| uugauguaccaagUUUCCCAGa 2 10 260 281 [rn4:14:81885237-81885258:+] 0.5807 141 7 -19.01 -0.6493 MIMAT0004741 rno-miR-219-1-3p 305451 Tnip2 gccCUGCAGGU-CUG--CGUUGAGa ||| ||| ||| ||||||| uguGAC--CCAUGACCAGCAACUCa 2 20 570 592 [rn4:14:81887668-81887690:+] 0.4808 150 7 -18.36 -0.3616 MIMAT0003115 rno-miR-207 305451 Tnip2 uucccUCCUCUCGGUCCUCUUCg || | | :::||||||| guuauAGAACA-UUGGGAGAAGg 2 19 90 111 [rn4:14:81885067-81885088:+] 0.4500 148 7 -13.57 -0.1832 MIMAT0003191 rno-miR-493 305451 Tnip2 gaCCGUGUGUCAUC-UGGAAGu ||:|||| ||| |||||| auGGUACAC--UAGAACCUUCc 2 20 926 945 [rn4:14:81888024-81888043:+] 0.5156 132 6 -22.42 -0.3455 MIMAT0003382 rno-miR-664 305451 Tnip2 auccgaccccucaUUUACUUAu |||||||| cucccuugaauacAAAUGAAUa 2 10 129 150 [rn4:14:81885106-81885127:+] 0.5807 145 7 -7.36 -1.1901 MIMAT0005280 rno-miR-743b 305451 Tnip2 agaUAAGUCAUACCACAGAAAg | | | ||| ||||||| acaAAUGAAUAUUCUGUCUUUu 2 20 140 161 [rn4:14:81885117-81885138:+] 0.5807 155 7 -8.70 -0.6666 MIMAT0005313 rno-miR-423 305451 Tnip2 ugACUCCCCGGAGUCUGGCUCGa || || :|| :|||||||| caUGCGGAAUCU-GGACCGAGCu 2 22 718 739 [rn4:14:81887816-81887837:+] 0.5055 159 7 -25.90 -0.1402 MIMAT0005318 rno-miR-471 305451 Tnip2 cacUUUUCGUGAUAUGAUG-CAu ||| | |:| |||||| || aauAAAUGGAUU-UACUACUGUg 2 20 1050 1071 [rn4:14:81888148-81888169:+] 0.5156 125 0 -10.53 -1.2018 MIMAT0005323 rno-miR-532-3p 305451 Tnip2 acGUUCGG-AACCCACACCCUCc |||||: | | |||||||| ugCAAGCUAUCUGUUGUGGGAGu 2 21 753 775 [rn4:14:81887851-81887873:+] 0.5106 163 7 -24.96 -0.7778 MIMAT0005329 rno-miR-674-5p 305451 Tnip2 auGUGGUGAGGGUAGAGUCACg ||: || || ||||||| ccCAUGACCAGCAACUCAGUGu 2 21 575 596 [rn4:14:81887673-81887694:+] 0.4808 156 7 -22.80 -0.3065 MIMAT0005330 rno-miR-674-3p 305451 Tnip2 aacaAGACUCUACCCUCGACAc |||| || ||||||| ggaaUCUG-GA-CCGAGCUGUc 2 19 723 742 [rn4:14:81887821-81887840:+] 0.5055 146 7 -16.01 -0.1736 MIMAT0005337 rno-miR-760-3p 305451 Tnip2 agGGGUGUCUG-GGUCUCGGc |||| | || ||||||| uuCCCAAACACAGCAGAGCCa 2 19 942 962 [rn4:14:81888040-81888060:+] 0.5156 157 7 -23.42 -0.4882 MIMAT0012824 rno-miR-513 305451 Tnip2 uacUUUCUGUGGAA--GA-ACACUu |:||||||| | || ||||| gccAGAGACACCAUGCCUGUGUGAc 2 20 551 575 [rn4:14:81887649-81887673:+] 0.5415 134 0 -18.27 -0.1431 MIMAT0012827 rno-miR-1224 305451 Tnip2 gaggUGGAGGGGUCAGGAGUg |:||:| ||||||| ggugAUCUUCAGUGUCCUCAu 2 18 461 481 [rn4:14:81887559-81887579:+] 0.6023 153 7 -21.30 -0.5010 MIMAT0012828 rno-miR-362 305451 Tnip2 uaAGUGU-GGAUCCAAGGUUCCUAa ||| | :|| | || ||||||| ucUCAGAUUCUUGCUUACAAGGAUg 2 23 161 185 [rn4:14:81885138-81885162:+] 0.5807 165 7 -13.90 -0.7488 MIMAT0012830 rno-miR-504 305451 Tnip2 cuGUCUCACGUCUG---GUCCCAGa :||:| || |: ||||||| ucUAGGGCCCAAAUAGGCAGGGUCa 2 21 614 638 [rn4:14:81887712-81887736:+] 0.4808 147 7 -19.31 -0.2060 MIMAT0012851 rno-miR-547 305451 Tnip2 gagUGAAUUUCUUCAUGGUu :|| | ||||||| acaGCUGUAUCCAGUACCAu 2 18 964 983 [rn4:14:81888062-81888081:+] 0.5156 141 7 -11.88 -0.1349 MIMAT0012852 rno-miR-667 305451 Tnip2 gaaccCGACCCA-CCGUCCACAGu |:|| || ||:||||||| auccuGUUGAGUAGGUAGGUGUCu 2 19 868 891 [rn4:14:81887966-81887989:+] 0.5156 165 7 -24.28 -0.4854 MIMAT0012853 rno-miR-761 305451 Tnip2 acACAGUCAAAGUGGGAC-GACg |||| || : ||||| ||| ggUGUC--UUAUUCCCUGACUGg 2 21 885 905 [rn4:14:81887983-81888003:+] 0.5156 121 0 -20.75 -0.1956 MIMAT0012854 rno-miR-764 305451 Tnip2 uccucCUGUACACUCGUGg |:: ||||||||| ugacuGGUCUGUGAGCACu 2 15 899 917 [rn4:14:81887997-81888015:+] 0.5156 154 7 -18.39 -0.2348 MIMAT0000560 rno-miR-326 305451 Tnip2 ugACCUCCUUC-CCGGGUCUCc || | ||| ||||||| gaUGUACCAAGUUUCCCAGAGa 2 20 262 283 [rn4:14:81885239-81885260:+] 0.5807 146 7 -13.89 -0.7105 MIMAT0000560 rno-miR-326 305451 Tnip2 ugaccuccuucccGGGUCUCc ||||||| caugucuguacaaCCCAGAGa 2 9 434 454 [rn4:14:81887532-81887552:+] 0.6023 140 7 -13.93 -0.3482 MIMAT0004641 rno-miR-330 305451 Tnip2 cggauucUGUGUCCGGGUCUCu ::||| ||||||| caugucuGUACA-ACCCAGAGa 2 16 434 454 [rn4:14:81887532-81887552:+] 0.6023 145 7 -23.00 -0.3482 MIMAT0004641 rno-miR-330 305451 Tnip2 cgGAUUCUGUG--UC--CGGGUCUCu :|:| ::|| || ||||||| ccUUGAUGUACCAAGUUUCCCAGAGa 2 21 258 283 [rn4:14:81885235-81885260:+] 0.5807 142 7 -21.80 -0.7143 MIMAT0000579 rno-miR-148b-3p 305451 Tnip2 uguuUCAAGACACUACGUGACu || || ||||||||| acuuAGAGAUG-GAUGCACUGg 2 19 342 362 [rn4:14:81887440-81887460:+] 0.6023 152 7 -22.07 -0.2383 MIMAT0004650 rno-miR-340-5p 305451 Tnip2 uuagucagAGUAA--CGAAAUAUu ||||| :|||||| uuuccuaaUCAUUUACUUUUAUAa 2 15 1028 1051 [rn4:14:81888126-81888149:+] 0.5156 133 6 -7.77 -0.1570 MIMAT0000615 rno-miR-101b 305451 Tnip2 aagucgauagugucAUGACAu |||||| auaaauggauuuacUACUGUg 2 8 1051 1071 [rn4:14:81888149-81888169:+] 0.5156 120 6 -9.47 -0.1990 MIMAT0000787 rno-miR-18a 305451 Tnip2 gaUAGACGUGAUC--UACGUGGAAu ||:| || :| ||||||||| guAUUUCCAAAGGGAAUGCACCUUu 2 22 1002 1026 [rn4:14:81888100-81888124:+] 0.5156 160 7 -20.37 -0.9848 MIMAT0000787 rno-miR-18a 305451 Tnip2 gauagaCGUGA--UCUACGUGGAAu |||:| | ||||||| ggcgagGCAUUCCUCAGGCACCUUu 2 18 509 533 [rn4:14:81887607-81887631:+] 0.6023 144 7 -17.02 -0.3101 MIMAT0000798 rno-miR-27b 305451 Tnip2 cguCUUGAAUCGGUGACACuu |:|:||| |:|||||| aauGGAUUUA-CUACUGUG-- 3 19 1054 1071 [rn4:14:81888152-81888169:+] 0.5156 144 0 -16.94 -0.1615 MIMAT0000799 rno-miR-27a 305451 Tnip2 cgcCUUGAAUCGGUGACACuu |:|:||| |:|||||| aauGGAUUUA-CUACUGUG-- 3 19 1054 1071 [rn4:14:81888152-81888169:+] 0.5156 144 0 -18.59 -0.1615 MIMAT0000801 rno-miR-29b 305451 Tnip2 uuGUGACUAAAGUUU-ACC-ACGAu || |: ||||: ||| |||| guCAGGGGCAUCAAGCUGGAUGCUu 2 22 682 706 [rn4:14:81887780-81887804:+] 0.4932 120 0 -16.10 -0.1062 MIMAT0000804 rno-miR-30c 305451 Tnip2 cgacUCUCACA-UCCUACAAAUGu ||: ||| | ||||||| --ccAGGAUGUCUGCCUGUUUACa 2 20 1 22 [rn4:14:81884978-81884999:+] 0.4413 150 7 -13.01 -0.1078 MIMAT0000805 rno-miR-30e 305451 Tnip2 gaagguCAGUUCCUACAAAUGu ||| | ||||||| caggauGUC-UGCCUGUUUACa 2 17 2 22 [rn4:14:81884979-81884999:+] 0.4413 142 7 -11.26 -0.1078 MIMAT0000806 rno-miR-30b-5p 305451 Tnip2 ucGACUCACA-UCCUACAAAUGu | |: ||| | ||||||| -cCAGGAUGUCUGCCUGUUUACa 2 21 1 22 [rn4:14:81884978-81884999:+] 0.4413 147 7 -12.17 -0.1078 MIMAT0000807 rno-miR-30d 305451 Tnip2 gaagguCAGCCCCUACAAAUGu ||| | ||||||| caggauGUC-UGCCUGUUUACa 2 17 2 22 [rn4:14:81884979-81884999:+] 0.4413 142 7 -10.72 -0.1067 MIMAT0000808 rno-miR-30a 305451 Tnip2 gaagguCAGCUCCUACAAAUGu ||| | ||||||| caggauGUC-UGCCUGUUUACa 2 17 2 22 [rn4:14:81884979-81884999:+] 0.4413 142 7 -11.06 -0.1078 MIMAT0000823 rno-miR-101a 305451 Tnip2 aagucaauagugucAUGACAu |||||| auaaauggauuuacUACUGUg 2 8 1051 1071 [rn4:14:81888149-81888169:+] 0.5156 120 6 -8.58 -0.1990 MIMAT0000834 rno-miR-128 305451 Tnip2 uuUCUCUGGCCAA---GUGACACu | | |: | || :|||||| uaAUAAAUGGAUUUACUACUGUG- 2 20 1049 1071 [rn4:14:81888147-81888169:+] 0.5156 126 6 -10.84 -0.2008 MIMAT0000842 rno-miR-136 305451 Tnip2 agGUAGUAGUUUUGUUUACCUca :| : |:| ||:||||||| uuUACUUUUAUAAUAAAUGGAuu 3 22 1039 1061 [rn4:14:81888137-81888159:+] 0.5156 145 0 -10.62 -0.1141 MIMAT0000844 rno-miR-138 305451 Tnip2 gcCGG--ACUAAGUGU-UGUGGU-CGa ||| ||| || | |||||| || cuGCCAAUGAGCCAGAGACACCAUGCc 2 22 541 567 [rn4:14:81887639-81887665:+] 0.5415 123 0 -18.78 -0.2045 MIMAT0000850 rno-miR-144 305451 Tnip2 ucAUGUA-GUAGAU-AUGACAu || || ||:|| |||||| aaUAAAUGGAUUUACUACUGUg 2 19 1050 1071 [rn4:14:81888148-81888169:+] 0.5156 125 6 -10.41 -1.2033 MIMAT0000853 rno-miR-150 305451 Tnip2 guGACCAUGU-UCCCAACCCUCu | | ||:| | ||||||| uaCAGUUAUAGAACAUUGGGAGa 2 21 86 108 [rn4:14:81885063-81885085:+] 0.4471 147 7 -16.04 -0.6996 MIMAT0000854 rno-miR-152 305451 Tnip2 gguucaagacagUACGUGACu |||||||| acuuagagauggAUGCACUGg 2 10 342 362 [rn4:14:81887440-81887460:+] 0.6023 145 7 -17.90 -0.2383 MIMAT0000877 rno-miR-204 305451 Tnip2 uccguauccuacuGUUUCCCUu |||||||| acacuuguauuucCAAAGGGAa 2 10 996 1017 [rn4:14:81888094-81888115:+] 0.5156 145 7 -13.77 -0.2193 MIMAT0000882 rno-miR-211 305451 Tnip2 uccguuuccuacuGUUUCCCUu |||||||| acacuuguauuucCAAAGGGAa 2 10 996 1017 [rn4:14:81888094-81888115:+] 0.5156 145 7 -13.42 -0.2213 MIMAT0003199 rno-miR-381 305451 Tnip2 cucucgaacGGGAACAUAu | ||||||| uugcaagaaCACUUGUAUu 2 11 988 1006 [rn4:14:81888086-81888104:+] 0.5156 142 7 -9.23 -0.4171 MIMAT0003381 rno-miR-499 305451 Tnip2 uuUGUAGUGAC-GUUCA-GAAUu :|| |||| ||||| |||| gaGCAAAACUGCCAAGUACUUAg 2 20 325 347 [rn4:14:81887423-81887445:+] 0.6023 130 0 -19.09 -0.4365 MIMAT0005284 rno-miR-874 305451 Tnip2 agccagggAGCCCGGU-CCCGUc | |||:|| ||||| ggaagagaUGGGGUCAGGGGCAu 2 15 670 692 [rn4:14:81887768-81887790:+] 0.4808 122 0 -20.06 -0.1005 MIMAT0005309 rno-miR-384-5p 305451 Tnip2 uguaacggauccuuaACAAAUGu ||||||| -ccaggaugucugccUGUUUACa 2 9 1 22 [rn4:14:81884978-81884999:+] 0.4413 140 7 -14.12 -0.1110

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Tnip2 RAID00179058 rno-miR-27a-3p miRNA MIMAT0000799 Tnip2 mRNA 305451 Prediction 0.2202 Tnip2 RAID00262487 rno-miR-7578 miRNA MIMAT0029579 Tnip2 mRNA 305451 Prediction 0.1828 Tnip2 RAID00327551 rno-miR-181a-2-3p miRNA MIMAT0017138 Tnip2 mRNA 305451 Prediction 0.1828 Tnip2 RAID00459154 rno-miR-384-5p miRNA MIMAT0005309 Tnip2 mRNA 305451 Prediction 0.1828 Tnip2 RAID00576954 rno-miR-204-5p miRNA MIMAT0000877 Tnip2 mRNA 305451 Prediction 0.1828 Tnip2 RAID00590675 rno-miR-211-5p miRNA MIMAT0000882 Tnip2 mRNA 305451 Prediction 0.1828 Tnip2 RAID00804463 rno-miR-340-5p miRNA MIMAT0004650 Tnip2 mRNA 305451 Prediction 0.1828 Tnip2 RAID00871093 rno-miR-150-5p miRNA MIMAT0000853 Tnip2 mRNA 305451 Prediction 0.1828 Tnip2 RAID01510027 rno-miR-30d-5p miRNA MIMAT0000807 Tnip2 mRNA 305451 Prediction 0.1828 Tnip2 RAID01665283 rno-miR-30e-5p miRNA MIMAT0000805 Tnip2 mRNA 305451 Prediction 0.1828 Tnip2 RAID01787692 rno-miR-136-5p miRNA MIMAT0000842 Tnip2 mRNA 305451 Prediction 0.1828 Tnip2 RAID01892378 rno-miR-874-3p miRNA MIMAT0005284 Tnip2 mRNA 305451 Prediction 0.1828 Tnip2 RAID02392111 rno-miR-138-5p miRNA MIMAT0000844 Tnip2 mRNA 305451 Prediction 0.1828 Tnip2 RAID02395785 rno-miR-27b-3p miRNA MIMAT0000798 Tnip2 mRNA 305451 Prediction 0.2202 Tnip2 RAID02696624 rno-miR-3584-5p miRNA MIMAT0017875 Tnip2 mRNA 305451 Prediction 0.1828 Tnip2 RAID02740709 rno-miR-29b-3p miRNA MIMAT0000801 Tnip2 mRNA 305451 Prediction 0.1828 Tnip2 RAID02881627 rno-miR-30a-5p miRNA MIMAT0000808 Tnip2 mRNA 305451 Prediction 0.1828 Tnip2 RAID02989772 rno-miR-152-3p miRNA MIMAT0000854 Tnip2 mRNA 305451 Prediction 0.1828 Tnip2 RAID02992760 rno-miR-30b-5p miRNA MIMAT0000806 Tnip2 mRNA 305451 Prediction 0.1828 Tnip2 RAID03008260 rno-miR-128-3p miRNA MIMAT0000834 Tnip2 mRNA 305451 Prediction 0.1828 Tnip2 RAID03153776 rno-miR-381-3p miRNA MIMAT0003199 Tnip2 mRNA 305451 Prediction 0.1828 Tnip2 RAID03153840 rno-miR-30c-5p miRNA MIMAT0000804 Tnip2 mRNA 305451 Prediction 0.1828 Tnip2 RAID03221744 rno-miR-532-3p miRNA MIMAT0005323 Tnip2 mRNA 305451 Prediction 0.1828 Tnip2 RAID03308044 rno-miR-18a-5p miRNA MIMAT0000787 Tnip2 mRNA 305451 Prediction 0.1828 Tnip2 RAID03499318 rno-miR-101b-3p miRNA MIMAT0000615 Tnip2 mRNA 305451 Prediction 0.1828 Tnip2 RAID03613395 rno-miR-760-3p miRNA MIMAT0005337 Tnip2 mRNA 305451 Prediction 0.1828 Tnip2 RAID03621989 rno-miR-326-3p miRNA MIMAT0000560 Tnip2 mRNA 305451 Prediction 0.2202 Tnip2 RAID03710194 rno-miR-499-5p miRNA MIMAT0003381 Tnip2 mRNA 305451 Prediction 0.1828 Tnip2 RAID03712814 rno-miR-101a-3p miRNA MIMAT0000823 Tnip2 mRNA 305451 Prediction 0.1828 Tnip2 RAID03764806 rno-miR-144-3p miRNA MIMAT0000850 Tnip2 mRNA 305451 Prediction 0.1828 Tnip2 RAID03779149 rno-miR-148b-3p miRNA MIMAT0000579 Tnip2 mRNA 305451 Prediction 0.1828 Tnip2 RAID03934877 rno-miR-330-5p miRNA MIMAT0004641 Tnip2 mRNA 305451 Prediction 0.2202 Tnip2 RAID04054858 rno-miR-204-3p miRNA MIMAT0004739 Tnip2 mRNA 305451 Prediction 0.1828