DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Aamp; Aamp_predicted; rCG_23739 rno-let-7c 132 150 -UUGGUAUGUUGGAUGAUGGAGU :||| :|||||| |||: UGACCU----GCCUACU-CCUUG Aamp; Aamp_predicted; rCG_23739 rno-miR-10a 264 288 GUGUUUAAGCCUAGAUGUCCCAU- :|: ||:| || | :||||| UGCGUCUUUGUAUGUUGGGGGUAG Aamp; Aamp_predicted; rCG_23739 rno-miR-125b 67 91 AGUGUUCAAUCCCA-GAGUCCCU- || |:|| |||| | ||||| GCAGAGGUGUGGGUGCAGAGGGAA Aamp; Aamp_predicted; rCG_23739 rno-miR-128a 215 243 UUUUCUCUGGCC------AAGUGACACU- |:|||:|| |||||| ||| -UAGGAGGCCAUGUCUCUUUCACUUUGAU Aamp; Aamp_predicted; rCG_23739 rno-miR-128b 215 243 CUUUCUCUGGCC------AAGUGACACU- |:|||:|| |||||| ||| -UAGGAGGCCAUGUCUCUUUCACUUUGAU Aamp; Aamp_predicted; rCG_23739 rno-miR-129* 248 287 -UACGAAAA--ACCCCAU---------------UCCCGAA :||: ||||||: :|||: GGUGUGAGCCAUGGGGUGCGUCUUUGUAUGUUGGGGGUA- Aamp; Aamp_predicted; rCG_23739 rno-miR-135a 204 228 AGUGUAUCCUU----AUUUUUCGGUAU- |:||: ||::|:|||||: ----CUGGGGCCUUUUAGGAGGCCAUGU Aamp; Aamp_predicted; rCG_23739 rno-miR-135b 243 262 -GUGUAUCCUUACUUUUCGGUAU- |:| || :||| |||||: UCGCU--GGUGUGA---GCCAUGG Aamp; Aamp_predicted; rCG_23739 rno-miR-145 83 113 -UUCCCUAAGGA--CCCUUUUG--ACCUG- :||||| ||||:||| ||||| AGAGGGAAGAGGAGGGGAGAACAUUGGACU Aamp; Aamp_predicted; rCG_23739 rno-miR-15b 249 282 -ACAUUUGGUACUACACG---------ACGAU- |||:|:||||| |||| ||:|: GUGUGAGCCAUGGGGUGCGUCUUUGUAUGUUGG Aamp; Aamp_predicted; rCG_23739 rno-miR-18 155 179 AUAGACGUGAUCUAC--GUGGAAU- ||| | ||:|| ||||||: -UUCUUCCCUGGAGACCCACCUUGC Aamp; Aamp_predicted; rCG_23739 rno-miR-184 172 202 UGGGAAUAGUCAA-----GAGG---CAGGU- ||||: ||| |||| ||||| -ACCUUGCCAGGCCUGCCCUCCCCUGUCCAG Aamp; Aamp_predicted; rCG_23739 rno-miR-193 203 229 -GACCCU-GAAACA--UCCGGU-CAA |||||: |||| |||||| || CCUGGGGCCUUUUAGGAGGCCAUGUC Aamp; Aamp_predicted; rCG_23739 rno-miR-199a 87 111 -CUUGUCCAUCAGACUUGUGACCC ||| ||| :| |||||:||| GGAAGAGGAGGGGAGAACAUUGGA Aamp; Aamp_predicted; rCG_23739 rno-miR-204 70 92 -UCCGUAUCCUACUGUUUCCCUU- |||::|:|| :||:|||||| GAGGUGUGGGU--GCAGAGGGAAG Aamp; Aamp_predicted; rCG_23739 rno-miR-205 19 44 GUCUGAGGCCAC--CUUACUUCCU- :| ||:|||| || | ||| UGGUGUCUGGUGUUGAGGGGGGGAU Aamp; Aamp_predicted; rCG_23739 rno-miR-211 66 92 UCCGUUUCC-UAC---UGUUUCCCUU- |||:||| :|| :||:|||||| -AGCAGAGGUGUGGGUGCAGAGGGAAG Aamp; Aamp_predicted; rCG_23739 rno-miR-214 3 33 -GACG-----GACAGA--CACGGACGACA- |||| ||| |||:||| ||| GCUGCAGCCUCUGGCAUGGUGUCUGGUGUU Aamp; Aamp_predicted; rCG_23739 rno-miR-217 63 86 UAGGUCAGUCAAGGA--CUACGUCAU |||| ||| |:||||| -CCCAG-CAGAGGUGUGGGUGCAGA- Aamp; Aamp_predicted; rCG_23739 rno-miR-24 238 260 GACAAGGACGACUUGACUCGGU- || |:| ||||: ||||||| UUGAUUC-GCUGGUGUGAGCCAU Aamp; Aamp_predicted; rCG_23739 rno-miR-291-5p 216 244 UCUCUCC----CGGAGG---UGAAACUAC :|||| |:|||: |||||||| -AGGAGGCCAUGUCUCUUUCACUUUGAUU Aamp; Aamp_predicted; rCG_23739 rno-miR-296 26 57 UGUCC-UAACUCCCCCCC----------GGGA- || :||||||||||| |||| --UGGUGUUGAGGGGGGGAUAAAGGGACCCCUG Aamp; Aamp_predicted; rCG_23739 rno-miR-298 163 200 CCUUCU-------------UGU-CGGGAGGAGACGG- |:||| :| ||||||| |||:| UGGAGACCCACCUUGCCAGGCCUGCCCUCCCCUGUCC Aamp; Aamp_predicted; rCG_23739 rno-miR-31 1 28 GUCGAUA-CGG---UCGUAGAACGGA- |:|||: ||| :|||| ||:|| CGGCUGCAGCCUCUGGCAUGGUGUCUG Aamp; Aamp_predicted; rCG_23739 rno-miR-320 54 70 AAGCGGGAGAGUUGGGUCGAAAA :|||||| |||||| -CUGCCCUCC---CCCAGCA--- Aamp; Aamp_predicted; rCG_23739 rno-miR-324-3p 63 89 -GGUCGUCGU-GGACCC-CGUCACC- ||||||| : |||| |||| || CCCAGCAGAGGUGUGGGUGCAGAGGG Aamp; Aamp_predicted; rCG_23739 rno-miR-326 69 89 UGACCUCCUU-CCCGGGUCUCC- |||| |||: |||||| ---AGAGGUGUGGGUGCAGAGGG Aamp; Aamp_predicted; rCG_23739 rno-miR-336 71 104 -UCUGAUCUAUA----------CCUUCCCACU- :| |:|:|: |||:||| || AGGUGUGGGUGCAGAGGGAAGAGGAGGGGAGAA Aamp; Aamp_predicted; rCG_23739 rno-miR-343 23 44 -AGACC-CGUGUGCCUCCCUCU ||||| |: | ||:|||| GUCUGGUGUUGAGGGGGGGAU- Aamp; Aamp_predicted; rCG_23739 rno-miR-347 75 91 -ACCCGCUGGGUCUCCCUGU ||||:| |||||||| GUGGGUG---CAGAGGGAA- Aamp; Aamp_predicted; rCG_23739 rno-miR-34a 118 142 UUGUUGG-----UCGAUUCUGUGACGGU ||||| |||| ||| ||||| -CCAACCCUUUCAGCU--GAC-CUGCCU Aamp; Aamp_predicted; rCG_23739 rno-miR-34b 126 144 GUUAGUCGAUUAAUGUGACGGAU- ||||||: || ||||||| --UUCAGCUG---AC-CUGCCUAC Aamp; Aamp_predicted; rCG_23739 rno-miR-34c 126 143 CGUUAGUCGAUUGAUGUGACGGA- ||||||:|| |||||| ---UUCAGCUGAC----CUGCCUA Aamp; Aamp_predicted; rCG_23739 rno-miR-352 129 147 AUGAUACG-UUGGAU-GAUGAGA || :||||: |||||| -----AGCUGACCUGCCUACUCC Aamp; Aamp_predicted; rCG_23739 rno-miR-381 259 279 CUCUCGAACGGGAACAUAU- :|:|: |:|:||||||: UGGGGUGCGUCUUUGUAUGU Aamp; Aamp_predicted; rCG_23739 rno-miR-421 198 225 -GUUG----UUUGUAAAUUACUCCGG- ||:| :::| ||| |||||| CCAGCCCUGGGGCCUUUUAGGAGGCCA Aamp; Aamp_predicted; rCG_23739 rno-miR-422b 181 203 -CGGAAGACUGAGGUU-CAGGUCA |||| |||| |||||| GGCCUGCC--CUCCCCUGUCCAGC Aamp; Aamp_predicted; rCG_23739 rno-miR-483 66 102 -UGUU----CUGCC----CUCCC--CUCCUCA-CU- :||: | || ||||| |||||| || AGCAGAGGUGUGGGUGCAGAGGGAAGAGGAGGGGAG Aamp; Aamp_predicted; rCG_23739 rno-miR-485 1 16 CUUAAGUAGUGCCG--GUCGGAGA- |||| |||||||| ----------CGGCUGCAGCCUCUG Aamp; Aamp_predicted; rCG_23739 rno-miR-543 259 281 UCUUCACGU-GGCGCUUACAAA | ||||: |: | ||||| UGGGGUGCGUCUUUGUAUGUUG Aamp; Aamp_predicted; rCG_23739 rno-miR-96 65 84 -UCGUUUUUACACGAUCACGGUUU ||||:|::|||| :|||| CAGCAGAGGUGUG--GGUGCA--- Aamp; Aamp_predicted; rCG_23739 rno-let-7c 121 143 UUGGUAUGUUGGAU-GAUGGAgu | || | ||:|: | ||:||| ACCCTTTCAGCTGACCTGCCTac Aamp; Aamp_predicted; rCG_23739 rno-miR-10a 234 265 GUG--UUUAAGC-------CUAGAUGUCCCAu ||| :||||| || | |::|||| CACTTTGATTCGCTGGTGTGAGCCATGGGGTg Aamp; Aamp_predicted; rCG_23739 rno-miR-128a 214 241 uuUUCUCUGG--C----CAAGUGACACU |:|||:|| | |||||| ||| ttAGGAGGCCATGTCTCTTTCACTTTGA Aamp; Aamp_predicted; rCG_23739 rno-miR-128b 214 241 cuUUCUCUGG--C----CAAGUGACACU |:|||:|| | |||||| ||| ttAGGAGGCCATGTCTCTTTCACTTTGA Aamp; Aamp_predicted; rCG_23739 rno-miR-129* 271 292 uACGAAAAACCCCAUUCCCGAA ||: | |||||| ||| ||| tTGTATGTTGGGGGTAGGTCTT Aamp; Aamp_predicted; rCG_23739 rno-miR-135a 200 226 aguGUAUCCU----UAUUUUUCGGUAu | |:||: ||::|:||||| agcCCTGGGGCCTTTTAGGAGGCCATg Aamp; Aamp_predicted; rCG_23739 rno-miR-135b 234 260 GUGUAUC----C--UUACUUUUCGGUAu ||| | | | ::|| :|||||| CACTTTGATTCGCTGGTG-TGAGCCATg Aamp; Aamp_predicted; rCG_23739 rno-miR-145 89 111 UUC-CCUAAGGACCCUUUUG--ACCUG ||| ||| ||||:||| ||||| AAGAGGA----GGGGAGAACATTGGAC Aamp; Aamp_predicted; rCG_23739 rno-miR-15b 250 271 ACAUUUGGUACUACACGACGAu |||:|:|||||: |||| || TGTGAGCCATGGGGTGCGTCTt Aamp; Aamp_predicted; rCG_23739 rno-miR-18 154 177 AUAGACGUGA--UCUACGUGGAAu | ||| | || ||| |||||| TTTCTTCCCTGGAGACCCACCTTg Aamp; Aamp_predicted; rCG_23739 rno-miR-184 171 200 ugGGAAUAGUC---A--AGAGG---CAGGU ||||: ||| | |||| ||||| caCCTTGCCAGGCCTGCCCTCCCCTGTCCA Aamp; Aamp_predicted; rCG_23739 rno-miR-193 204 228 GACCCUG--AAA-CAUCCGGU-CAa |||||:| ||| | |||||| || CTGGGGCCTTTTAGGAGGCCATGTc Aamp; Aamp_predicted; rCG_23739 rno-miR-199a 88 110 CUUGUCCAUCAGACUUGUGACCc ||| ||| :| |||||:||| GAAGAGGAGGGGAGAACATTGGa Aamp; Aamp_predicted; rCG_23739 rno-miR-204 26 51 uCCGUA----UCCUACUGUUUCCCUu ||::| :||: ||:||||||| tGGTGTTGAGGGGGGGATAAAGGGAc Aamp; Aamp_predicted; rCG_23739 rno-miR-204 71 90 UCCGUAUCCUACUGUUUCCCUU |||::| ||:|| ||:|||||| AGGTGT-GGGTG-CAGAGGGAA Aamp; Aamp_predicted; rCG_23739 rno-miR-205 28 49 gucugaggCCACCUUACUUCCu || ||:|| |||| gtgttgagGGGGGGATAAAGGg Aamp; Aamp_predicted; rCG_23739 rno-miR-211 30 51 uccgUUUCCUACUGUUUCCCUu |::||: ||:||||||| gttgAGGGGGGGATAAAGGGAc Aamp; Aamp_predicted; rCG_23739 rno-miR-211 65 90 ucCGUUUCC-UAC---UGUUUCCCUU |||:||| :|| :||:|||||| caGCAGAGGTGTGGGTGCAGAGGGAA Aamp; Aamp_predicted; rCG_23739 rno-miR-214 4 31 GACG-----GACAG-A-CACGGACGACA |||| ||| | | |||:||| ||| CTGCAGCCTCTGGCATGGTGTCTGGTGT Aamp; Aamp_predicted; rCG_23739 rno-miR-217 62 86 uaGGUCAG--UCAAGGACUACGUCau |||| | || | : |:||||| ccCCAG-CAGAGGTGTGGGTGCAGag Aamp; Aamp_predicted; rCG_23739 rno-miR-291-5p 216 243 UCUCUCC----CGGAG---GUGAAACUAc || |||| |:||| ||||||||| AG-GAGGCCATGTCTCTTTCACTTTGATt Aamp; Aamp_predicted; rCG_23739 rno-miR-296 24 54 uGUCC-UAACUCCC---------CCCCGGGa | || :||||||| ||| ||| tCTGGTGTTGAGGGGGGGATAAAGGGACCCc Aamp; Aamp_predicted; rCG_23739 rno-miR-298 177 198 ccuUCUUGUCGGGAGGAGACGG ||: | ||||||| |||:| gccAGGCCTGCCCTCCCCTGTC Aamp; Aamp_predicted; rCG_23739 rno-miR-320 53 72 aagCGGGAGAGUUGGGUCGaaaa |||||| | |||||| cctGCCCTC-C--CCCAGCagag Aamp; Aamp_predicted; rCG_23739 rno-miR-324-3p 64 87 GGUCGUC-GUGGACCC-CGUCACC ||||||| :: |||| |||| || CCAGCAGAGGTGTGGGTGCAGAGG Aamp; Aamp_predicted; rCG_23739 rno-miR-326 66 87 ugacCUCC-UUCCCGGGUCUCC |||| : |||: |||||| agcaGAGGTGTGGGTGCAGAGG Aamp; Aamp_predicted; rCG_23739 rno-miR-336 83 102 UCUGAUCUAUACCUUCCCACU ||| :|| : |||:||| || AGA-GGGAAGAGGAGGGGAGA Aamp; Aamp_predicted; rCG_23739 rno-miR-342 231 256 cugcccACGCUAA-AGA-CACACUCu | :|||| || ||||||| tttcacTTTGATTCGCTGGTGTGAGc Aamp; Aamp_predicted; rCG_23739 rno-miR-343 24 40 AGACCCGUGUGCCUCCCUCu ||||| ::: |||||:| TCTGG---TGTTGAGGGGGg Aamp; Aamp_predicted; rCG_23739 rno-miR-347 76 91 ACCCGCUGGGUCUCCCUgu ||||:| |||||||| TGGGTG---CAGAGGGAag Aamp; Aamp_predicted; rCG_23739 rno-miR-34a 117 141 uuGUUG-----GUCGAUUCUGUGACGGu |||| ||||| ||| ||||| tcCAACCCTTTCAGCT--GAC-CTGCCt Aamp; Aamp_predicted; rCG_23739 rno-miR-34b 124 142 guuAGUCGAUUAAUGUGACGGAU ||||||:| ||||||| cttTCAGCTGAC----CTGCCTA Aamp; Aamp_predicted; rCG_23739 rno-miR-34c 123 141 cguuAGUCGAUUGAUGUGACGGA ||||||: || |||||| ccttTCAGCTG---AC-CTGCCT Aamp; Aamp_predicted; rCG_23739 rno-miR-352 122 146 auGAUA--CG-UUGGA-UGAUGAGa || | || :|||| |||||| ccCTTTCAGCTGACCTGCCTACTCc Aamp; Aamp_predicted; rCG_23739 rno-miR-381 261 277 CUCUCGAACGGGAACAUAu |:| || |:|:|||||| GGGTGC--GTCTTTGTATg Aamp; Aamp_predicted; rCG_23739 rno-miR-421 199 223 GUUG----UUUGUAAAUUACUCCGG ||:| :::| ||| | |||||| CAGCCCTGGGGCCTTTTAGGAGGCC Aamp; Aamp_predicted; rCG_23739 rno-miR-422b 182 202 CGGAAGACUGA-GGUUCAGGUCa |||| | || || |||||| GCCTGC--CCTCCCCTGTCCAGc Aamp; Aamp_predicted; rCG_23739 rno-miR-483 80 102 uguUCUGCCCUCCCCUCCUCACU ||| || || |||||:| || tgcAGAGGGAAGAGGAGGGGAGA Aamp; Aamp_predicted; rCG_23739 rno-miR-96 66 86 UCGUUUUUACACGAUCACGGUUu ||||:|::|||| :|||| :| AGCAGAGGTGTG--GGTGCAGAg Aamp; Aamp_predicted; rCG_23739 rno-miR-204 44 51 U-----CCGUA----------------UCCUACUGUUUCCCUU ||||| :|| ||:||||||| GCCUCUGGCAUGGUGUCUGGUGUUGAGGGGGGGAUAAAGGGAC Aamp; Aamp_predicted; rCG_23739 rno-miR-211 44 51 U-----CCGU--------------UUCCUA--CUGUUUCCCUU |||| :|||: ||:||||||| GCCUCUGGCAUGGUGUCUGGUGUUGAGGGGGGGAUAAAGGGAC Aamp; Aamp_predicted; rCG_23739 rno-miR-291-5p 236 243 UC--------------UCUCCC-------GGAGGUGAAACUAC :|||| |:|:||||||||| GCCCUGGGGCCUUUUAGGAGGCCAUGUCUCUUUCACUUUGAUU Aamp; Aamp_predicted; rCG_23739 rno-miR-342 249 256 CUGCCCACG-----------------CUAAA-GA-CACACUCU || || |||| || ||||||| UUAGGAGGCCAUGUCUCUUUCACUUUGAUUCGCUGGUGUGAGC

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Aamp RAID00619100 rno-miR-3576 miRNA MIMAT0017862 Aamp mRNA 301512 Prediction 0.1828 Aamp RAID02687041 rno-miR-3593-5p miRNA MIMAT0017896 Aamp mRNA 301512 Prediction 0.1828