DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000901 rno-miR-299 362087 Ubac1 uacauacacccugccAUUUGGu |||||| ggcuucuuuaauaaaUAAACCc 2 8 377 398 [rn4:3:4178972-4178993:-] 0.5434 120 6 -4.53 -0.3283 MIMAT0005322 rno-miR-532-5p 362087 Ubac1 uguCAGGAUGUGAGUUCCGUAc || :| :| ||||||| aauGUAUUUUAAAGAAGGCAUg 2 20 299 320 [rn4:3:4179050-4179071:-] 0.5434 147 7 -14.15 -0.6583 MIMAT0005338 rno-miR-770 362087 Ubac1 gcaccgggucugugCACCACGa ||||||| --------------GUGGUGCc 2 9 1 8 [rn4:3:4179362-4179369:-] 0.6998 140 7 -12.40 -0.5162 MIMAT0012856 rno-miR-759 362087 Ubac1 caguuuuaacaaacGUGAGACg ||||||| ccguccccuccagaCACUCUGc 2 9 223 244 [rn4:3:4179126-4179147:-] 0.5434 140 7 -15.05 -0.1714 MIMAT0000552 rno-miR-301a 362087 Ubac1 cgaaaCUGUUA-UGAUAACGUGAc || |:| :|||||||||| uuacaGAGAGUGGCUAUUGCACUg 2 19 179 202 [rn4:3:4179168-4179191:-] 0.5434 165 7 -23.53 -0.2149 MIMAT0000579 rno-miR-148b-3p 362087 Ubac1 ugUUUCA-AGACACUACGUGACu |:||| || | ||||||| agAGAGUGGCUAU--UGCACUGg 2 21 183 203 [rn4:3:4179167-4179187:-] 0.5434 148 7 -17.74 -0.2431 MIMAT0000796 rno-miR-26a 362087 Ubac1 ucggauAGGACCU-A--AUGAACUu ||||| | | ||||||| cugggcUCCUGAAGUGCUACUUGAa 2 17 244 268 [rn4:3:4179102-4179126:-] 0.5434 150 7 -15.62 -0.5828 MIMAT0000797 rno-miR-26b 362087 Ubac1 uggauAGGACUU-A--AUGAACUu ||||||| | ||||||| ugggcUCCUGAAGUGCUACUUGAa 2 17 245 268 [rn4:3:4179102-4179125:-] 0.5434 158 7 -18.72 -0.5828 MIMAT0000804 rno-miR-30c 362087 Ubac1 cgacucucACAUCCUACAAAUGu || |:||||||| ccagcuucUGACAGGUGUUUACa 2 16 161 183 [rn4:3:4179187-4179209:-] 0.5434 147 7 -15.71 -0.4322 MIMAT0000805 rno-miR-30e 362087 Ubac1 gaAGGUCAGUUCCUACAAAUGu |:| | || |:||||||| gcUUCUGACA--GGUGUUUACa 2 21 164 183 [rn4:3:4179187-4179206:-] 0.5434 153 7 -18.59 -0.4258 MIMAT0000806 rno-miR-30b-5p 362087 Ubac1 ucgacucACAUCCUACAAAUGu || |:||||||| cagcuucUGACAGGUGUUUACa 2 16 162 183 [rn4:3:4179187-4179208:-] 0.5434 147 7 -17.07 -0.4322 MIMAT0000807 rno-miR-30d 362087 Ubac1 gaaGGUC--AGCC--CCUACAAAUGu |||| || | |:||||||| gucCCAGCUUCUGACAGGUGUUUACa 2 20 158 183 [rn4:3:4179187-4179212:-] 0.5434 149 7 -18.15 -0.4290 MIMAT0000808 rno-miR-30a 362087 Ubac1 gaaGGUC--AG-CU-CCUACAAAUGu |||| || || |:||||||| gucCCAGCUUCUGACAGGUGUUUACa 2 20 158 183 [rn4:3:4179187-4179212:-] 0.5434 152 7 -19.75 -0.4322 MIMAT0000810 rno-miR-31 362087 Ubac1 guCGAUACGGUCGUAGAACGGa || ||||| |||||||| ggGCCCAGCCAGGAUCUUGCCu 2 21 61 82 [rn4:3:4179288-4179309:-] 0.5434 168 7 -28.34 -0.1719 MIMAT0000836 rno-miR-130a 362087 Ubac1 uacgggaaaAUUG-UAACGUGAc |::| |||||||| uacagagagUGGCUAUUGCACUg 2 14 180 202 [rn4:3:4179168-4179190:-] 0.5434 148 7 -16.50 -0.2189 MIMAT0000837 rno-miR-130b 362087 Ubac1 uacgggaaaguaGUAACGUGAc :|||||||| acagagaguggcUAUUGCACUg 2 11 181 202 [rn4:3:4179168-4179189:-] 0.5434 146 7 -15.02 -0.2169 MIMAT0000854 rno-miR-152 362087 Ubac1 ggUUCA-AGACAGUACGUGACu :||| || | ||||||| gaGAGUGGCUAU--UGCACUGg 2 20 184 203 [rn4:3:4179167-4179186:-] 0.5434 143 7 -16.17 -0.2431 MIMAT0000855 rno-miR-153 362087 Ubac1 cuagugaaaaCACUGAU-ACGUu |||:||| |||| uuuacagagaGUGGCUAUUGCAc 2 13 178 200 [rn4:3:4179170-4179192:-] 0.5434 120 0 -13.15 -0.1229 MIMAT0000863 rno-miR-186 362087 Ubac1 ucgGGUUUUCCUCUUAAGAAAc |: | || |: |||||| ugaCUCACAGAUGGCUUCUUUa 2 20 365 386 [rn4:3:4178984-4179005:-] 0.5434 123 6 -10.58 -0.1178 MIMAT0004742 rno-miR-296 362087 Ubac1 ccucucggaggugggUUGGGAg |||||| cuucuuuaauaaauaAACCCUu 2 8 379 400 [rn4:3:4178970-4178991:-] 0.5434 120 6 -12.81 -0.1749 MIMAT0003114 rno-miR-383 362087 Ubac1 ucggugUCAGUGGAAGACUAGa || ||: |||||||| uaaagaAGGCAUGUUCUGAUCc 2 17 308 329 [rn4:3:4179041-4179062:-] 0.5434 160 7 -17.51 -0.9070 MIMAT0005304 rno-miR-301b 362087 Ubac1 cgaaaCUGUUA-UGGUAACGUGAc || |:| :|:|||||||| uuacaGAGAGUGGCUAUUGCACUg 2 19 179 202 [rn4:3:4179168-4179191:-] 0.5434 161 7 -22.84 -0.2149 MIMAT0005309 rno-miR-384-5p 362087 Ubac1 uguaacGGAUCCUUAACAAAUGu :||: |: ||||||| ccagcuUCUGACAGGUGUUUACa 2 18 161 183 [rn4:3:4179187-4179209:-] 0.5434 149 7 -14.18 -0.4322

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G101584 Ubac1 Rattus norvegicus 362087

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Ubac1; Kpc2; Ubadc1 rno-miR-125b 45 65 AGUGUUCAAUC-CCAGAGUCCCU :|| :| || ||||| ---UGAGGCGGUGGGCGCAGGGC Ubac1; Kpc2; Ubadc1 rno-miR-127 61 89 -UCGGUUCGAGUCU--------GCCUAGGCU :||| ||| |||: :||||| GGGCCCAGC-CAGGAUCUUGCCUGGAUCA-- Ubac1; Kpc2; Ubadc1 rno-miR-128a 182 207 UUUUCUCUGGCCAA----GUGACACU- ||||| :|| ||||| || --CAGAGAGUGGCUAUUGCACUGGGAA Ubac1; Kpc2; Ubadc1 rno-miR-128b 182 207 CUUUCUCUGGCCAA----GUGACACU- ||||| :|| ||||| || --CAGAGAGUGGCUAUUGCACUGGGAA Ubac1; Kpc2; Ubadc1 rno-miR-130a 174 204 -UACGGGAAA-----AUUG-UAACGUGAC- :||::: |::| ||||||||| GGUGUUUACAGAGAGUGGCUAUUGCACUGG Ubac1; Kpc2; Ubadc1 rno-miR-133a 48 74 -UGUCGACCAACUUCCCC---UGGUU- :|:| ||| | |||| :|||: GGCGG-UGGGCGCAGGGCCCAGCCAGG Ubac1; Kpc2; Ubadc1 rno-miR-133b 47 74 AUCG--ACCAACUUCCCC---UGGUU- :|| ||| | |||| :|||: AGGCGGUGGGCGCAGGGCCCAGCCAGG Ubac1; Kpc2; Ubadc1 rno-miR-134 16 38 -GGGAGACCAGUUGGUCAGUGU- :||| ||| :: ||||| || CUCCU-UGGCUGUGCAGUCUCAG Ubac1; Kpc2; Ubadc1 rno-miR-148b 180 205 -UGUUUCAAGACACU----ACGUGACU- |||:|| |||: |||||||: UACAGAGA---GUGGCUAUUGCACUGGG Ubac1; Kpc2; Ubadc1 rno-miR-152 159 205 -GGGUUCAAGAC--------AGU--------------ACGUGACU ||||: ||||| |:| |||||||: UCCCAGCUUCUGACAGGUGUUUACAGAGAGUGGCUAUUGCACUGGG Ubac1; Kpc2; Ubadc1 rno-miR-153 8 33 AGUGAAAAC----ACUGAUACGUU- :||| ||:||:||||: CUACUGUGCUCCUUGGCUGUGCAGU Ubac1; Kpc2; Ubadc1 rno-miR-15b 202 223 ACAUUUGGUACUACA--CGACGAU ::| :||:||| ||||| --GGGAAGGUGGUGUUUGCUGCC- Ubac1; Kpc2; Ubadc1 rno-miR-181a* 25 57 CCAUGUU--AGUUG---------CCAGCUACCA ||:||: |||:| || ||:||| UGUGCAGUCUCAGCAGUCUGUGAGG-CGGUGGG Ubac1; Kpc2; Ubadc1 rno-miR-189 22 61 -UGACUAU----AGUCGA----------GUCAUCCGUG- :||| ||||| |:||:|||:| GGCUGUGCAGUCUCAGCAGUCUGUGAGGCGGUGGGCGCA Ubac1; Kpc2; Ubadc1 rno-miR-193 41 63 -GAC-C-CUGAAACAUCCG-GUCAA ||| | |:| ||:||| ||| UCUGUGAGGCG--GUGGGCGCAGG- Ubac1; Kpc2; Ubadc1 rno-miR-199a 169 206 CUUGUCCA--------UCAGACU-----UGUGACCC- :|||||| || ||: :||||||| UGACAGGUGUUUACAGAGAGUGGCUAUUGCACUGGGA Ubac1; Kpc2; Ubadc1 rno-miR-214 4 29 GACGGACAGACACGGA----CGACA- ||||| ||||||: ||||| GUGCCUA-CUGUGCUCCUUGGCUGUG Ubac1; Kpc2; Ubadc1 rno-miR-222 270 298 CUCUGGG---UCAU---CGGUCUACAUCGA ||||| :||: ||: :|||||| -UGACCCUUAGGUGUUUGCUU-GUGUAGCC Ubac1; Kpc2; Ubadc1 rno-miR-224 81 104 AUUUGCCU--UGGUGA--UCACUGAAC :||| || :|| ||||||| ---CUGGAUCACAGCUUCAGUGACUC- Ubac1; Kpc2; Ubadc1 rno-miR-24 239 264 GACAAGGACGACUUGA------CUCGGU- :||||||::|| | ||:| ----CUCUGCUGGGCUCCUGAAGUGCUAC Ubac1; Kpc2; Ubadc1 rno-miR-26a 242 270 -CGGAU--AGGACCUA---AUGAACUU- ||: ||||| |||||||| UGCUGGGCUCCUGAAGUGCUACUUGAAU Ubac1; Kpc2; Ubadc1 rno-miR-26b 242 270 UUGGAU--AGGACUUA---AUGAACUU- :|: ||||||| |||||||| UGCUGGGCUCCUGAAGUGCUACUUGAAU Ubac1; Kpc2; Ubadc1 rno-miR-27a 1 17 CGCCUUGAAUCGG-UGACACUU |:|| ||| |||||| GUGGU-----GCCUACUGUGC- Ubac1; Kpc2; Ubadc1 rno-miR-27b 27 50 -CGUCUUGAAUCGGU-GACACUU- |||| || ||| ||||||: UGCAGU-CUCAGCAGUCUGUGAGG Ubac1; Kpc2; Ubadc1 rno-miR-28 229 255 -GAGUUAUCUG----AC-ACUCGAGGAA ||| |||| || ||:|||||| CCUCC--AGACACUCUGCUGGGCUCCUG Ubac1; Kpc2; Ubadc1 rno-miR-290 134 151 UUUUUCACGGGGGUAUCAAACUC |||| |||:|||||| -----CUGCCA-CAUGGUUUGAA Ubac1; Kpc2; Ubadc1 rno-miR-296 36 68 -UGUCCUA-ACUCC-CC--------CCCGGGA :||| ||||| || |||||| AGCAGUCUGUGAGGCGGUGGGCGCAGGGCCCA Ubac1; Kpc2; Ubadc1 rno-miR-298 117 140 CCUUCUUGUCGGG----AGGAGACGG- |||:||:: ||:|||||| ----UAACGGCUUGUCAUCUUCUGCCA Ubac1; Kpc2; Ubadc1 rno-miR-29a 198 217 UUGGCUAAAGUCUACCACGAU ||:|: ||:|||||:| CACUGGGA--AGGUGGUGUUU Ubac1; Kpc2; Ubadc1 rno-miR-29b 196 217 UUGUGACUAAAGUUUACCACGAU :|||||: |::|||||:| UGCACUGGGA--AGGUGGUGUUU Ubac1; Kpc2; Ubadc1 rno-miR-29c 198 217 -UGGCUAAAGUUUACCACGAU ||:|: |::|||||:| CACUGGGA--AGGUGGUGUUU Ubac1; Kpc2; Ubadc1 rno-miR-301 163 204 UACGAA-ACUGU--------------UA-UGAUAACGUGAC |||| ||||| :| :||||||||||| -AGCUUCUGACAGGUGUUUACAGAGAGUGGCUAUUGCACUGG Ubac1; Kpc2; Ubadc1 rno-miR-30b 199 220 UCGACUCACAUC-CUACAAAUGU |||:| :| |:|||||:| -ACUGGGAA-GGUGGUGUUUGCU Ubac1; Kpc2; Ubadc1 rno-miR-30c 183 220 CGACUCUCAC----------AUCCU------ACAAAUGU ||||||| |:||| |||||:| --AGAGAGUGGCUAUUGCACUGGGAAGGUGGUGUUUGCU Ubac1; Kpc2; Ubadc1 rno-miR-30d 199 220 GAAGGUCAG-CCCCUACAAAUGU |::| || |:|||||:| --ACUGGGAAGGUGGUGUUUGCU Ubac1; Kpc2; Ubadc1 rno-miR-30e 160 185 AGGUC--AGU---UCCUACAAAUGU- |||| || ||| |||||||| CCCAGCUUCUGACAGG-UGUUUACAG Ubac1; Kpc2; Ubadc1 rno-miR-31 61 84 GUCGAUACGGUCGUAGAACGGA- :|| ||||| ||||||||| GGGCCCAGCCAGGAUCUUGCCUG Ubac1; Kpc2; Ubadc1 rno-miR-32 14 34 -CGUUGAAUCAUUACACGUUAU || |||:| ||||||:| UGCUCCUUGGC--UGUGCAGUC Ubac1; Kpc2; Ubadc1 rno-miR-320 101 127 AAGCGGGAGAG--UUGGG---UCGAAAA || :|||:|| :|||: :|||| CUC-UCCUUUCCUGACCUAACGGCUUG- Ubac1; Kpc2; Ubadc1 rno-miR-324-3p 33 57 -GGUCGUCGUGGACCCCGUCACC- :||||||: : || |||:|||| CUCAGCAGUCUGUGAGGCGGUGGG Ubac1; Kpc2; Ubadc1 rno-miR-325 235 264 -UGUGA-AUGACUCGUGGA-----UGAUCC ||||| |:|||:|| ||| :||| GACACUCUGCUGGGCUCCUGAAGUGCUAC- Ubac1; Kpc2; Ubadc1 rno-miR-326 50 75 UGACCUCCU---UCCCGGGUC--UCC- || ||: ||||||||| ||| --CGGUGGGCGCAGGGCCCAGCCAGGA Ubac1; Kpc2; Ubadc1 rno-miR-327 219 237 -UGGGAGUACGGGGAGUUCC :||| |:| |||||| || UGCCC-CGU-CCCCUCCAGA Ubac1; Kpc2; Ubadc1 rno-miR-328 48 74 -UGCCUUCC-CGUCUCUCC-CGGUC- :||| :|| ||||:| ||||| GGCGGUGGGCGCAGGGCCCAGCCAGG Ubac1; Kpc2; Ubadc1 rno-miR-330 238 268 AGAGACG-UCCG-GGA---CACGA--AACG |||||| :||| ||| ||||| ||| ACUCUGCUGGGCUCCUGAAGUGCUACUUGA Ubac1; Kpc2; Ubadc1 rno-miR-331 40 65 AAGA----UC-CUAUCCGGGUCCCCG ||| :| |:|:||| ||||| GUCUGUGAGGCGGUGGGCGCAGGGC- Ubac1; Kpc2; Ubadc1 rno-miR-336 184 213 -UCUGAUCUAU------ACCUUCCCACU- ||| |:| || |||:| ||||: GAGAGUGGCUAUUGCACUGGGAAGGUGGU Ubac1; Kpc2; Ubadc1 rno-miR-339 35 65 ACUCGA-GGAC-CUCC--------UGUCCCU ||| :||| |||| :||||| -CAGCAGUCUGUGAGGCGGUGGGCGCAGGGC Ubac1; Kpc2; Ubadc1 rno-miR-340 21 54 -CCGAUAUUUCA---UUG------ACUCUGCCU ||||:|: ||| |:| ||||:||| UGGCUGUGCAGUCUCAGCAGUCUGUGAGGCGGU Ubac1; Kpc2; Ubadc1 rno-miR-342 20 51 CUGCCCACGCUAAAGAC-------ACACUCU- :|| ||:| ||| ||||||: -UUGGCUGUGCAGUCUCAGCAGUCUGUGAGGC Ubac1; Kpc2; Ubadc1 rno-miR-343 52 75 AGACCCGUGUGCC-------UCCCUCU |||||:|| || ||| -GUGGGCGCAGGGCCCAGCCAGGA--- Ubac1; Kpc2; Ubadc1 rno-miR-344 48 78 -UGCCAGUCCGAAA-CCGA------UCUAGU :|||| :||| ||| :|||| GGCGGU-GGGCGCAGGGCCCAGCCAGGAUCU Ubac1; Kpc2; Ubadc1 rno-miR-345 48 71 -CGUGACCUGA-UCCCCAGUCGU ||: |||:| |||| |||| GGCGGUGGGCGCAGGGCCCAGCC Ubac1; Kpc2; Ubadc1 rno-miR-346 45 73 UCUCCG---UCCGUGAGUCCG--UCUGU- ||||| :|||:| :||| || || UGAGGCGGUGGGCGCA-GGGCCCAGCCAG Ubac1; Kpc2; Ubadc1 rno-miR-349 45 66 UCUCCAAU-UCUGUCGUCCCGAC |||| :|:| ||||||| UGAGGCGGUGGGC-GCAGGGCC- Ubac1; Kpc2; Ubadc1 rno-miR-351 245 282 GUCCGAG--UUUCCCGA------------GGAGUCCCU :||||| :||| ||| |||:||| UGGGCUCCUGAAGUGCUACUUGAAUUGACCCUUAGGU- Ubac1; Kpc2; Ubadc1 rno-miR-370 66 94 -UUGGUCCAAGGUGGGGUCGUC---CG- |:||||| ||: ||::| || CAGCCAGGAUCUUGCCUGGAUCACAGCU Ubac1; Kpc2; Ubadc1 rno-miR-378 55 76 -UGUGUCCUGGACCUCAGUCCUC :|:||||:|| || ||||| GGCGCAGGGCCC--AGCCAGGAU Ubac1; Kpc2; Ubadc1 rno-miR-382 71 97 -CUUAG-GUGGUGCU--UGUUGAAG- |:||| ::|| || |||:|||| AGGAUCUUGCCUGGAUCACAGCUUCA Ubac1; Kpc2; Ubadc1 rno-miR-383 150 173 -UCGGUGUCAG--UGGAAGACUAGA ||:::||||| | ||||||| AAGUUGCAGUCCCAGCUUCUGAC-- Ubac1; Kpc2; Ubadc1 rno-miR-409-5p 277 299 GUUUCA---ACGAGCCCAUUGGA |:|| ||||:| |||:|| -UAGGUGUUUGCUUGUGUAGCCC Ubac1; Kpc2; Ubadc1 rno-miR-421 34 52 -GUUGUUUGUAAAUUACUCCGG ||:||: | :|||||| UCAGCAGUCU----GUGAGGCG Ubac1; Kpc2; Ubadc1 rno-miR-422b 5 34 -CGGAAGAC-UGAGGUU----CAGGUCA- |||| ||| :|||| || |||| UGCCUACUGUGCUCCUUGGCUGUGCAGUC Ubac1; Kpc2; Ubadc1 rno-miR-424 200 223 AGGUUUUGUACUU--AACGACGAC : ::|| :||: ||||||| CUGGGAAGGUGGUGUUUGCUGCC- Ubac1; Kpc2; Ubadc1 rno-miR-431 26 53 -ACGUAC----UGCCGGACGUUCUGU- |||| :| |:|||::||:|: GUGCAGUCUCAGCAGUCUGUGAGGCGG Ubac1; Kpc2; Ubadc1 rno-miR-449 119 141 UGGUCGAUU-GUUAUGUGACGGU- |:||| || |||||| -ACGGCUUGUCAUCUU-CUGCCAC Ubac1; Kpc2; Ubadc1 rno-miR-485 50 72 CUUAA--GUAGUGCCGG-UCGGAGA ::| |: || |||| |||| CGGUGGGCG-CAGGGCCCAGCCA-- Ubac1; Kpc2; Ubadc1 rno-miR-489 314 345 CGACGGUAUA-----------UACACUACAGUAA | |||:| :||| |||||| --AGGCAUGUUCUGAUCCAAAGUGUUAUGUCAA- Ubac1; Kpc2; Ubadc1 rno-miR-542-3p 119 143 AAGUC-AAUAGUU--AGACAGUGU- |:| ||:||| |||| |||| -ACGGCUUGUCAUCUUCUGCCACAU Ubac1; Kpc2; Ubadc1 rno-miR-542-5p 187 227 GCACUG---------------UACUACUA-----GGGGCUC |||:| :||:|| ||||| AGUGGCUAUUGCACUGGGAAGGUGGUGUUUGCUGCCCCGU- Ubac1; Kpc2; Ubadc1 rno-miR-125b 34 64 AGU-GUU---CAAUC--CCA---GAGUCCCu ||| ||: || || ||| | ||||| TCAGCAGTCTGTGAGGCGGTGGGCGCAGGGc Ubac1; Kpc2; Ubadc1 rno-miR-127 57 79 uCGGUUCGAGUCUG-CCUAGgcu || ::|| ||| | ||||| cGCAGGGCCCAGCCAGGATCttg Ubac1; Kpc2; Ubadc1 rno-miR-128a 180 205 uUUUCUCUGGCC---AA-GUGACACU | ||||| :|| || ||||| || tACAGAGAGTGGCTATTGCACTGGGA Ubac1; Kpc2; Ubadc1 rno-miR-128b 184 205 CUUUCUCUGGCCAAGUGACACU ||:|| |:|: | ||||| || GAGAGTGGCTATTGCACTGGGA Ubac1; Kpc2; Ubadc1 rno-miR-130a 180 202 uacgggaaaAUUG-UAACGUGAC |::| ||||||||| tacagagagTGGCTATTGCACTG Ubac1; Kpc2; Ubadc1 rno-miR-130b 181 202 uacgggaaaguagUAACGUGAC ||||||||| acagagagtggctATTGCACTG Ubac1; Kpc2; Ubadc1 rno-miR-133a 45 68 ugUCGACCAACUUC--CCCUGGUu || ||| |: | ||| ||| tgAGGCGGTGGGCGCAGGGCCCAg Ubac1; Kpc2; Ubadc1 rno-miR-133b 46 68 aUCGACCAACUUC--CCCUGGUu || ||| |: | ||| ||| gAGGCGGTGGGCGCAGGGCCCAg Ubac1; Kpc2; Ubadc1 rno-miR-148b 181 203 UGUUUCAAGAC-ACUACGUGACu |||:|| : | | ||||||| ACAGAGAGTGGCTATTGCACTGg Ubac1; Kpc2; Ubadc1 rno-miR-152 183 203 ggguUCA-AGACAGUACGUGACu ||| || | ||||||| agagAGTGGCTAT--TGCACTGg Ubac1; Kpc2; Ubadc1 rno-miR-153 12 31 agugaaaacACUGAUACGUu ||:||:|||| tgtgctcctTGGCTGTGCAg Ubac1; Kpc2; Ubadc1 rno-miR-15b 201 223 ACAUUUGGUACUAC--ACGACGau || :|| :||:|| |||||| TGGGAA-GGTGGTGTTTGCTGCcc Ubac1; Kpc2; Ubadc1 rno-miR-181a* 34 56 ccauGUUAGUUGC-CAGCUACCa ||:|| ::| | ||:||| tcagCAGTCTGTGAGGCGGTGGg Ubac1; Kpc2; Ubadc1 rno-miR-189 38 59 ugacuAUAGUCGAGUCAUCCGUG |:| || |:||:|||:| cagtcTGTGAG-GCGGTGGGCGC Ubac1; Kpc2; Ubadc1 rno-miR-193 42 63 GACCCUGAAACAUCCG-GUCaa ||| || ||:||| ||| CTGTGAGGCGGTGGGCGCAGgg Ubac1; Kpc2; Ubadc1 rno-miR-199a 179 204 cuUGUCCAUCA--GA-CUUGUGACCC |||| ||| || :||||||| ttACAGAGAGTGGCTATTGCACTGGG Ubac1; Kpc2; Ubadc1 rno-miR-222 269 297 cuCUGGG--UCAUCGGUC---UACAUCGa ||||| || |:: | :|||||| ttGACCCTTAGGTGTTTGCTTGTGTAGCc Ubac1; Kpc2; Ubadc1 rno-miR-224 78 104 auuugCCU--UGGUGA--UCACUGAac ||| || :|| ||||||| tgcctGGATCACAGCTTCAGTGACTct Ubac1; Kpc2; Ubadc1 rno-miR-24 227 251 gacaAGGAC---GACUUGACUCGgu ||| | || :|||:|| ccccTCCAGACACTCTGCTGGGCtc Ubac1; Kpc2; Ubadc1 rno-miR-26b 244 268 uuggauAGGACUU-A--AUGAACUU ||||||| | |||||||| ctgggcTCCTGAAGTGCTACTTGAA Ubac1; Kpc2; Ubadc1 rno-miR-27a 1 17 CGCCUUGAAUCGGUGACACuu |:|| :| |:|||||| GTGGTGC----CTACTGTGct Ubac1; Kpc2; Ubadc1 rno-miR-27b 28 48 CGUCUUGAAUCG-GUGACACUu |||| || ||| |||||| GCAG-TCTCAGCAGTCTGTGAg Ubac1; Kpc2; Ubadc1 rno-miR-28 230 254 GAGUUAUCU--GAC-ACUCGAGGAa ||| | | | ||| ||:|||||| CTCCAGACACTCTGCTGGGCTCCTg Ubac1; Kpc2; Ubadc1 rno-miR-290 129 150 uuuuucACGGGGGUAUCAAACUc || || |||:|||||| atcttcTG-CCACATGGTTTGAa Ubac1; Kpc2; Ubadc1 rno-miR-296 45 67 ugUCC-UAACUC-CCCCCCGGGa ||| : ||:| | |||||| tgAGGCGGTGGGCGCAGGGCCCa Ubac1; Kpc2; Ubadc1 rno-miR-298 113 138 ccuucUUGUCG----GGAGGAGACGG |||:|| | ||:|||||| gacctAACGGCTTGTCATCTTCTGCC Ubac1; Kpc2; Ubadc1 rno-miR-29a 196 216 uuggcuaaagUCUACCACGAu ||:|||||:| tgcactgggaAGGTGGTGTTt Ubac1; Kpc2; Ubadc1 rno-miR-29c 197 216 uggcuaaagUUUACCACGAu |::|||||:| gcactgggaAGGTGGTGTTt Ubac1; Kpc2; Ubadc1 rno-miR-301 175 202 uACGAA--ACUGUUA-UGAUAACGUGAC ||:|| || |:| :||||||||||| gTGTTTACAGAGAGTGGCTATTGCACTG Ubac1; Kpc2; Ubadc1 rno-miR-30a-5p 165 183 GAAGGUCAGCUCCUACAAAUGU ||||: | | ||| |||||||| CTTCT-GAC-AGG-TGTTTACA Ubac1; Kpc2; Ubadc1 rno-miR-30b 163 183 UCGACUCACAUCCUACAAAUGU |||| || |:|||||||| AGCT-TCTGACAGGTGTTTACA Ubac1; Kpc2; Ubadc1 rno-miR-30b 198 219 ucGACUCACAUCCUACAAAUGu |||:| : |:|||||:| caCTGGGAAGGTGGTGTTTGCt Ubac1; Kpc2; Ubadc1 rno-miR-30c 167 183 cGACUCUCACAUCCUACAAAUGU |||| | |:|||||||| tCTGACA------GGTGTTTACA Ubac1; Kpc2; Ubadc1 rno-miR-30c 199 219 cGACUCUCACAUCCUACAAAUGu |||:|| || |:|||||:| aCTGGGAAGGT--GGTGTTTGCt Ubac1; Kpc2; Ubadc1 rno-miR-30d 194 219 gAAGGUCAGC---CC-CUACAAAUGu || || | | || |:|||||:| aTTGCACTGGGAAGGTGGTGTTTGCt Ubac1; Kpc2; Ubadc1 rno-miR-30e 160 183 aGGUC--AG--UUCCUACAAAUGU |||| || | |:|||||||| cCCAGCTTCTGACAGGTGTTTACA Ubac1; Kpc2; Ubadc1 rno-miR-31 61 82 guCGAUACGGUCGUAGAACGGA || ||||| ||||||||| ggGCCCAGCCAGGATCTTGCCT Ubac1; Kpc2; Ubadc1 rno-miR-32 15 33 CGUUGAAUCAUUACACGUUAu || |||:| ||||||:| GCTCCTTGG--CTGTGCAGTc Ubac1; Kpc2; Ubadc1 rno-miR-320 101 127 aAGCGG-GAGAGUUGG---GUCGAAaa || || :|| ::||| |:|||| cTCTCCTTTCCTGACCTAACGGCTTgt Ubac1; Kpc2; Ubadc1 rno-miR-324-3p 34 55 gGUCGUCGUGGACCCCGUCACC ||||||: : || |||:|||| tCAGCAGTCTGTGAGGCGGTGG Ubac1; Kpc2; Ubadc1 rno-miR-325 236 267 UGUGA-AUGACUCGUG--------GAUGAUCc ||||| |:|||:|| | ||||| | ACACTCTGCTGGGCTCCTGAAGTGCTACTTGa Ubac1; Kpc2; Ubadc1 rno-miR-326 51 73 ugACCUCCUUCCCGGGUC--UCC |||: | ||||||||| ||| ggTGGGCGCAGGGCCCAGCCAGG Ubac1; Kpc2; Ubadc1 rno-miR-327 220 236 uGGGAGUACGGGGAGUUCc ||| |:| |||||| || gCCC-CGT-CCCCTCCAGa Ubac1; Kpc2; Ubadc1 rno-miR-328 49 67 uGCCUUCCCGUCUCUCCCGGuc ||| |||| : |||||| gCGG-TGGGC--GCAGGGCCca Ubac1; Kpc2; Ubadc1 rno-miR-331 40 65 aAGA---UC--CUAUCCGGGUCCCcg ||| || |:|:||| ||||| gTCTGTGAGGCGGTGGGCGCAGGGcc Ubac1; Kpc2; Ubadc1 rno-miR-336 185 214 UCUGAUCUAUA-------CCUUC--CCACu ||| |:| ||| ||||| |||| AGAGTGGCTATTGCACTGGGAAGGTGGTGt Ubac1; Kpc2; Ubadc1 rno-miR-339 45 64 ACUCGAGGACCUCCUGUCCCu |||| |||: | ||||| TGAGGCGGTGGGCG-CAGGGc Ubac1; Kpc2; Ubadc1 rno-miR-340 22 53 CCGAUAUUUCA---UUG------ACUCUGCCu ||||:|: ||| |:| ||||:||| GGCTGTGCAGTCTCAGCAGTCTGTGAGGCGGt Ubac1; Kpc2; Ubadc1 rno-miR-342 19 49 cugCC--CACGCUAAAG-----ACACACUCu || |||| :| || | |||||| cttGGCTGTGCAGTCTCAGCAGTCTGTGAGg Ubac1; Kpc2; Ubadc1 rno-miR-343 41 59 AGACCCGUGUGCCUCCCUCu |||| | | :||| ||| | TCTGTG-AGGCGGTGGGCGc Ubac1; Kpc2; Ubadc1 rno-miR-344 65 88 uGCCAGUCCGA-AACCGAUCUAGU | | |||| | ||| ||:||||| cCAGCCAGGATCTTGCCTGGATCA Ubac1; Kpc2; Ubadc1 rno-miR-345 49 70 CGUGACCUG-AUCCCCAGUCGu ||: |||:| |||| |||| GCGGTGGGCGCAGGGCCCAGCc Ubac1; Kpc2; Ubadc1 rno-miR-349 45 66 uCUCCAAUUCUGUCGUCCCGac |||| : |: ||||||| tGAGGCGGTGGGCGCAGGGCcc Ubac1; Kpc2; Ubadc1 rno-miR-351 245 282 guCCGAG--UUUCCCGA------------GGAGUCCcu ||||| :||| ||| |||:||| tgGGCTCCTGAAGTGCTACTTGAATTGACCCTTAGGtg Ubac1; Kpc2; Ubadc1 rno-miR-370 56 74 uugGUCCAAGGUGGGGUC-GUCCg |||| ||||| |||| gcgCAGG-----GCCCAGCCAGGa Ubac1; Kpc2; Ubadc1 rno-miR-378 56 75 uGUGUCCUGGACCUCAGUCCUc |:||||:|| || ||||| gCGCAGGGCC--CAGCCAGGAt Ubac1; Kpc2; Ubadc1 rno-miR-382 72 95 CUUAG-GUGGUGCU--UGUUGAAG |:||| ::|| || |||:|||| GGATCTTGCCTGGATCACAGCTTC Ubac1; Kpc2; Ubadc1 rno-miR-383 308 329 ucggugUCAGUGGAAGACUAGa || ||: |||||||| taaagaAGGCATGTTCTGATCc Ubac1; Kpc2; Ubadc1 rno-miR-383 151 174 UCGGUGUCAGUG--GAAGACUaga ||:::||||| | ||||||| AGTTGCAGTCCCAGCTTCTGAcag Ubac1; Kpc2; Ubadc1 rno-miR-409-5p 279 298 guuucAACGAGCCCAUUGGa |||||:| |||:|| ggtgtTTGCTTGTGTAGCCc Ubac1; Kpc2; Ubadc1 rno-miR-421 31 51 guuguUUGUAAAUUACUCCGg |:|| | :|||||| gtctcAGCAGTCTGTGAGGCg Ubac1; Kpc2; Ubadc1 rno-miR-422b 6 38 CGGAAGAC-UGAGG---------UUCAG-GUCa |||| ||| :|||| |||| ||| GCCTACTGTGCTCCTTGGCTGTGCAGTCTCAGc Ubac1; Kpc2; Ubadc1 rno-miR-424 200 223 agguuUUGUAC--UUAACGACGac || :|| : ||||||| ctgggAAGGTGGTGTTTGCTGCcc Ubac1; Kpc2; Ubadc1 rno-miR-431 43 65 ACGUACUGCCG---GACGUUCUGu ||:: |:|||: | |||:|:| TGTGAGGCGGTGGGC-GCAGGGCc Ubac1; Kpc2; Ubadc1 rno-miR-449 118 139 UGGUCGAUUGUUAUGUGACGGU | |:||| :: || : |||||| AACGGCTTGTCATCTTCTGCCA Ubac1; Kpc2; Ubadc1 rno-miR-485 51 73 cuuaaguaGUGCC-GGUCGGaga || || |||||| ggtgggcgCAGGGCCCAGCCagg Ubac1; Kpc2; Ubadc1 rno-miR-489 322 345 cGAC--GGUAUAUACACUACAGUaa ||| ||| | :||| |||||| tCTGATCCA-AAGTGTTATGTCAag Ubac1; Kpc2; Ubadc1 rno-miR-542-3p 118 141 aaGUC-AAUAGU--UAGACAGUGU |:| ||:||| |||| |||| aaCGGCTTGTCATCTTCTGCCACA Ubac1; Kpc2; Ubadc1 rno-miR-542-5p 207 227 gCACUGU--ACUACUAGGGGCuc |||::: || || ||||| gGTGGTGTTTGCTG--CCCCGtc Ubac1; Kpc2; Ubadc1 rno-miR-130a 195 202 ----------------------------UACGGGAAAAUUGUAACGUGAC :|| | :||||||||| CCCAGCUUCUGACAGGUGUUUACAGAGAGUGGC-------UAUUGCACUGG Ubac1; Kpc2; Ubadc1 rno-miR-130b 195 202 ----------------------------UACGGGAAAGUAGUAACGUGAC :|| | :||||||||| CCCAGCUUCUGACAGGUGUUUACAGAGAGUGGC-------UAUUGCACUGG Ubac1; Kpc2; Ubadc1 rno-miR-148b 196 203 --------------------UGUUUCAAGACACU----ACGUGACU |||:|| |||: |||||||: CCAGCUUCUGACAGGUGUUUACAGAGA---GUGGCUAUUGCACUGGG Ubac1; Kpc2; Ubadc1 rno-miR-152 196 203 GGGUUCAAGACAGU----------------------ACGUGACU |||: ||||| || |||||||: -CCAGCUUCUGACAGGUGUUUACAGAGAGUGGCUAUUGCACUGGG Ubac1; Kpc2; Ubadc1 rno-miR-26a 261 268 -----------------CGGAU--AGGACCUA---AUGAACUU ||: ||||| |||||||| UCCCCUCCAGACACUCUGCUGGGCUCCUGAAGUGCUACUUGAAU Ubac1; Kpc2; Ubadc1 rno-miR-26b 261 268 U----------------UGGAU--AGGACUUA---AUGAACUU :|: ||||||| |||||||| UCCCCUCCAGACACUCUGCUGGGCUCCUGAAGUGCUACUUGAAU Ubac1; Kpc2; Ubadc1 rno-miR-301 195 202 UA--CGAA-ACUGUUA---------------UGAUAACGUGAC |||| |||||: :||||||||||| CCCAGCUUCUGACAGGUGUUUACAGAGAGUGGCUAUUGCACUGG Ubac1; Kpc2; Ubadc1 rno-miR-30a-5p 176 183 G-----------AAGGUCAG---------CUC-CUACAAAUGU || ||||| || |:|||||||| AUGGUUUGAAAGUUGCAGUCCCAGCUUCUGACAGGUGUUUACAG Ubac1; Kpc2; Ubadc1 rno-miR-30b 176 183 ----------------------UCGACUCACAUCCUACAAAUGU |||| || |:|||||||| AUGGUUUGAAAGUUGCAGUCCCAGCUUC-UGACAGGUGUUUACAG Ubac1; Kpc2; Ubadc1 rno-miR-30c 176 183 C----GACUCUCA-CAUC---------------CUACAAAUGU :||| ||| | || |:|||||||| AUGGUUUGAAAGUUGCAGUCCCAGCUUCUGACAGGUGUUUACAG Ubac1; Kpc2; Ubadc1 rno-miR-30e 176 183 A-------------------GGUC--AGUUC--CUACAAAUGU |||| || |:|||||||| AUGGUUUGAAAGUUGCAGUCCCAGCUUCUGACAGGUGUUUACAG Ubac1; Kpc2; Ubadc1 rno-miR-31 75 82 G---------------------UCGAUACGGUCGUAGAACGGA :|| ||||| ||||||||| GUCUGUGAGGCGGUGGGCGCAGGGCCCAGCCAGGAUCUUGCCUG Ubac1; Kpc2; Ubadc1 rno-miR-383 322 329 -------UCGGUG--------------UCAGUGGAAGACUAGA |||| || ||: |||||||| CUUGUGUAGCCCAAUGUAUUUUAAAGAAGGCAUGUUCUGAUCC

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Ubac1 RAID00088013 rno-miR-301a-3p miRNA MIMAT0000552 Ubac1 mRNA 362087 Prediction 0.1828 Ubac1 RAID00232299 rno-miR-30a-5p miRNA MIMAT0000808 Ubac1 mRNA 362087 Prediction 0.2202 Ubac1 RAID00357812 rno-miR-26a-5p miRNA MIMAT0000796 Ubac1 mRNA 362087 Prediction 0.1828 Ubac1 RAID00367727 rno-miR-152-3p miRNA MIMAT0000854 Ubac1 mRNA 362087 Prediction 0.1828 Ubac1 RAID00391747 rno-miR-30b-5p miRNA MIMAT0000806 Ubac1 mRNA 362087 Prediction 0.2202 Ubac1 RAID00527336 rno-miR-30c-5p miRNA MIMAT0000804 Ubac1 mRNA 362087 Prediction 0.2202 Ubac1 RAID01118610 rno-miR-148b-3p miRNA MIMAT0000579 Ubac1 mRNA 362087 Prediction 0.1828 Ubac1 RAID01224789 rno-miR-301b-3p miRNA MIMAT0005304 Ubac1 mRNA 362087 Prediction 0.1828 Ubac1 RAID01383625 rno-miR-374-3p miRNA MIMAT0017223 Ubac1 mRNA 362087 Prediction 0.1828 Ubac1 RAID01419082 rno-miR-130b-3p miRNA MIMAT0000837 Ubac1 mRNA 362087 Prediction 0.1828 Ubac1 RAID01777414 rno-miR-186-5p miRNA MIMAT0000863 Ubac1 mRNA 362087 Prediction 0.1828 Ubac1 RAID01913392 rno-miR-384-5p miRNA MIMAT0005309 Ubac1 mRNA 362087 Prediction 0.2202 Ubac1 RAID02670878 rno-miR-153-3p miRNA MIMAT0000855 Ubac1 mRNA 362087 Prediction 0.1828 Ubac1 RAID02676432 rno-miR-26b-5p miRNA MIMAT0000797 Ubac1 mRNA 362087 Prediction 0.1828 Ubac1 RAID02786290 rno-miR-296-3p miRNA MIMAT0004742 Ubac1 mRNA 362087 Prediction 0.1828 Ubac1 RAID02870694 rno-miR-31a-5p miRNA MIMAT0000810 Ubac1 mRNA 362087 Prediction 0.1828 Ubac1 RAID02982851 rno-miR-30d-5p miRNA MIMAT0000807 Ubac1 mRNA 362087 Prediction 0.2202 Ubac1 RAID03105181 rno-miR-30e-5p miRNA MIMAT0000805 Ubac1 mRNA 362087 Prediction 0.2202 Ubac1 RAID03148786 rno-miR-130a-3p miRNA MIMAT0000836 Ubac1 mRNA 362087 Prediction 0.1828 Ubac1 RAID03786651 rno-miR-383-5p miRNA MIMAT0003114 Ubac1 mRNA 362087 Prediction 0.1828