DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000568 rno-miR-330* 83616 Trim3 agagacguCCGGGACACGAAACg ||::|| ||||||| auuuauucGGUUCU-UGCUUUGg 2 16 164 185 [rn4:1:163337837-163337858:-] 0.6820 153 7 -17.19 -0.5713 MIMAT0004652 rno-miR-342-5p 83616 Trim3 gaGUUAGUGUC--UAU--CGUGGGGa ||: |||| ||| |||||| gaCAGAGACAGCAAUACCCCACCCCa 2 21 357 382 [rn4:1:163337640-163337665:-] 0.6430 122 6 -18.20 -0.1017 MIMAT0000598 rno-miR-347 83616 Trim3 acccGCUGGGU--CUCCCUGu :|:|:|| ||||||| ugcuUGGCUCAUGGAGGGACg 2 16 15 35 [rn4:1:163337987-163338007:-] 0.6820 150 7 -23.59 -0.1972 MIMAT0000847 rno-miR-142-5p 83616 Trim3 ucaucaCGAAAGAUGAAAUAc | || | ||||||| ccccacGGUUGC-ACUUUAUu 2 16 147 166 [rn4:1:163337856-163337875:-] 0.6820 145 7 -5.65 -0.5930 MIMAT0003174 rno-miR-540 83616 Trim3 gguccUAG-CUGGAGACUGGa :|| | :|||||||| ccucaGUCUGCUCUCUGACCc 2 16 264 284 [rn4:1:163337738-163337758:-] 0.6820 150 7 -21.72 -0.1353 MIMAT0003209 rno-miR-363* 83616 Trim3 uuuaacguagcacuaGGUGGGc |||||| agagacagcaauaccCCACCCc 2 8 360 381 [rn4:1:163337641-163337662:-] 0.6430 120 6 -12.43 -0.1404 MIMAT0012828 rno-miR-362 83616 Trim3 uaagugugGAUCCAAGGUUCCUAa || ||| |||||||| ggccuggaCU-GGUCCCAAGGAUg 2 17 196 218 [rn4:1:163337804-163337826:-] 0.6820 158 7 -21.48 -0.1777 MIMAT0000552 rno-miR-301a 83616 Trim3 cgaaacUGUUAUGAUAACGUGAc || || :||||||| uccccaACCCCACGGUUGCACUu 2 18 140 162 [rn4:1:163337860-163337882:-] 0.6820 149 7 -11.65 -0.7088 MIMAT0000596 rno-miR-346 83616 Trim3 ucUCCGUCCG---UGAGUCCGUC-UGu |||::||| || | ||||| || agAGGUGGGCCAGAC-CCGGCAGCACu 2 22 70 95 [rn4:1:163337927-163337952:-] 0.6820 122 0 -25.45 -0.3640 MIMAT0000602 rno-miR-20a 83616 Trim3 gaUGGACGUGAUAUUCGUGAAAu ||| ||| :| ||||||| caACC-CCACGGU-UGCACUUUa 2 22 144 164 [rn4:1:163337858-163337878:-] 0.6820 149 7 -16.85 -1.2240 MIMAT0000786 rno-miR-17-5p 83616 Trim3 gaUGGACGUGACAUUCGUGAAAc ||| ||| || ||||||| caACC-CCACGGU-UGCACUUUa 2 22 144 164 [rn4:1:163337858-163337878:-] 0.6820 153 7 -15.30 -1.2226 MIMAT0000817 rno-miR-93 83616 Trim3 gaUGGACGUGCUUGUCGUGAAAc ||| |||| :: ||||||| caACC-CCACG-GUUGCACUUUa 2 22 144 164 [rn4:1:163337858-163337878:-] 0.6820 153 7 -19.79 -1.2212 MIMAT0000825 rno-miR-106b 83616 Trim3 uagacGUGACAGUCGUGAAAu ||| ||: ||||||| aacccCACGGUU-GCACUUUa 2 17 145 164 [rn4:1:163337858-163337877:-] 0.6820 154 7 -15.71 -1.2113 MIMAT0000836 rno-miR-130a 83616 Trim3 uacgggaaaauUG-UAACGUGAc || :||||||| uccccaaccccACGGUUGCACUu 2 12 140 162 [rn4:1:163337860-163337882:-] 0.6820 142 7 -14.58 -0.7199 MIMAT0000837 rno-miR-130b 83616 Trim3 uacgggaaaGUAGUAACGUGAc || :||||||| ccccaacccCACGGUUGCACUu 2 14 141 162 [rn4:1:163337860-163337881:-] 0.6820 145 7 -15.13 -0.7125 MIMAT0000843 rno-miR-137 83616 Trim3 gaugcgcauaagaauUCGUUAUu ||||||| cacacugacagagacAGCAAUAc 2 9 351 373 [rn4:1:163337649-163337671:-] 0.6430 140 7 -6.10 -0.2740 MIMAT0003203 rno-miR-485 83616 Trim3 cuuaaguagugccgGUCGGAGa ||||||| gccuggggccagaaCAGCCUCu 2 9 288 309 [rn4:1:163337713-163337734:-] 0.6625 140 7 -18.79 -0.7705 MIMAT0003211 rno-miR-20b-5p 83616 Trim3 uggacGUGAUACUCGUGAAAc ||| :| ||||||| aacccCACGGU-UGCACUUUa 2 17 145 164 [rn4:1:163337858-163337877:-] 0.6820 146 7 -14.05 -1.2240 MIMAT0005304 rno-miR-301b 83616 Trim3 cgaaacUGUUAUGGUAACGUGAc || || :||||||| uccccaACCCCACGGUUGCACUu 2 18 140 162 [rn4:1:163337860-163337882:-] 0.6820 149 7 -12.96 -0.7088

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G057500 Trim3 Rattus norvegicus 83616

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Trim3; Berp; Rnf22 rno-let-7a 300 318 UUGAUAUGUUGGAUGAUGGAGU- |||:||| :|||:||| -----AACAGCCUCUUACUUCAG Trim3; Berp; Rnf22 rno-let-7b 293 318 -UUGGUG-UGUUGGAUGAUGGAGU- ::||| |||:||| :|||:||| GGGCCAGAACAGCCUCUUACUUCAG Trim3; Berp; Rnf22 rno-let-7c 293 318 -UUGGUA-UGUUGGAUGAUGGAGU- ::||| |||:||| :|||:||| GGGCCAGAACAGCCUCUUACUUCAG Trim3; Berp; Rnf22 rno-let-7e 300 318 UGAUAUGUUGGAGGAUGGAGU- |||:||||:|||:||| ----AACAGCCUCUUACUUCAG Trim3; Berp; Rnf22 rno-miR-10a 162 197 -GUGUUUAAGCCUAGA----------UGUCCCAU- :|: |||||| ||| || ||||: UUAUUUAUUCGGUUCUUGCUUUGGUGACUGGGUGG Trim3; Berp; Rnf22 rno-miR-130a 124 163 -UACGGGAAAAUU-G---------------UAACGUGAC |||||||| | :||||||| AAUGCCCUUCCCUUCCUCCCCAACCCCACGGUUGCACUU Trim3; Berp; Rnf22 rno-miR-130b 124 163 -UACGGGA----AAGUAG------------UAACGUGAC ||||||| ||| || :||||||| AAUGCCCUUCCCUUCCUCCCCAACCCCACGGUUGCACUU Trim3; Berp; Rnf22 rno-miR-133a 59 84 UGUC-GACCAAC-UUCC-CCUGGUU- :| |||| :||| ||:|||: -GGGUCUGGCUAAGAGGUGGGCCAGA Trim3; Berp; Rnf22 rno-miR-133b 59 84 AUC-GACCAAC-UUCC-CCUGGUU- :| |||| :||| ||:|||: GGGUCUGGCUAAGAGGUGGGCCAGA Trim3; Berp; Rnf22 rno-miR-140* 171 189 ACAGGCACCAAGAUGGGACACCAU- |||||| |:| ||||: ------CGGUUCUUGCUU-UGGUGA Trim3; Berp; Rnf22 rno-miR-145 27 56 -UUCCCUAA--GGA-CCCUUUUGACCUG- :||||| | ||| :|:||||| GGAGGGACGGACAUAGGGGUGAUUGGACA Trim3; Berp; Rnf22 rno-miR-148b 56 99 UGUUUCAAGACA------CUA---------------CGUGACU :|:| |||| |:| ||||||| -AGAGGGUCUGGCUAAGAGGUGGGCCAGACCCGGCAGCACUGAA Trim3; Berp; Rnf22 rno-miR-151 251 275 -GGAGUUCCUC--GGAGUCAGAUCA |||| |||||||||: CCCUCCCUUACACCCUCAGUCUGC- Trim3; Berp; Rnf22 rno-miR-181a 77 103 -UGAGU---GGCUGUCGCAACUUACAA :| || |||:|||| ||||||| GGC-CAGACCCGGCAGCACUGAAUGUG Trim3; Berp; Rnf22 rno-miR-181b 78 103 GGGU---GGCUGUCGUUACUUACAA ||| |||:||||| ||||||| GCCAGACCCGGCAGCACUGAAUGUG Trim3; Berp; Rnf22 rno-miR-181c 77 103 -UGAGU---GGCUGUCCA-ACUUACAA :| || |||:||| ||||||| GGC-CAGACCCGGCAGCACUGAAUGUG Trim3; Berp; Rnf22 rno-miR-184 254 285 UGGGAAU-----AGUCA----AGAGGCAGGU |||||| ||||| ||||:| || UCCCUUACACCCUCAGUCUGCUCUCUGACCC Trim3; Berp; Rnf22 rno-miR-185 298 318 -CUUGACGGAAAGAGAGGU- |||| |||| |: ||:|| AGAACAGCCUCUUACUUCAG Trim3; Berp; Rnf22 rno-miR-189 92 115 -UGAC-UAUAGUCGAGUCAUCCGUG- |||| ||:| :|| ||:||||: CACUGAAUGUGGGC---GUGGGCAUG Trim3; Berp; Rnf22 rno-miR-193 182 203 GACC-CUGAAACAUCCGGUCAA ||| |||| ||:|||| | UUGGUGACUGGGUGGGCCUGG- Trim3; Berp; Rnf22 rno-miR-204 34 63 UCC-GUAUCCUA------CUG-UUUCCCUU || ||||||: ||| |:|||| CGGACAUAGGGGUGAUUGGACAAGAGGGU- Trim3; Berp; Rnf22 rno-miR-205 19 46 GUCUGAG-GCCA-CCUUACU---UCCU- |:||| :|| ||| || |||: -UGGCUCAUGGAGGGACGGACAUAGGGG Trim3; Berp; Rnf22 rno-miR-207 56 94 -UUCCC----------UCCUCUCGGUCC---UCUUCG- :|||| ||| |:||||| :| ||| AGAGGGUCUGGCUAAGAGGUGGGCCAGACCCGGCAGCA Trim3; Berp; Rnf22 rno-miR-210 265 290 -AGUC-GGCGACAGUGUGCGUGUC- |||| |:||| || || | ||| CUCAGUCUGCUCUCUGACCCCCAGC Trim3; Berp; Rnf22 rno-miR-211 19 47 UCCG-----UUUCCUA-CUGUUUCCCUU ||| :|:||| |||| ||||: UGGCUCAUGGAGGGACGGACAUAGGGGU Trim3; Berp; Rnf22 rno-miR-212 178 208 CCGG---CACUGACC--------UCUGACAAU ||: |||||||| :||||| UGCUUUGGUGACUGGGUGGGCCUGGACUGG-- Trim3; Berp; Rnf22 rno-miR-214 177 208 GACGG----ACAGACA----CGGAC--GACA |||: || ||| ||||| ||| UUGCUUUGGUGACUGGGUGGGCCUGGACUGG Trim3; Berp; Rnf22 rno-miR-22* 15 36 UUUCGAA-CG-GUGACUUCUUGA |||| || ||: ||:|:|| --UGCUUGGCUCAUGGAGGGACG Trim3; Berp; Rnf22 rno-miR-221 80 107 CUUUGGGUCGUC-UG--UUACA-UCGA |:||||:|||| || ||||| :|| CAGACCCGGCAGCACUGAAUGUGGGCG Trim3; Berp; Rnf22 rno-miR-222 80 107 CUCUGGGUCAUCG-GUC-UACA-UCGA ||||||:| ||| | | |||| :|| CAGACCCGGCAGCACUGAAUGUGGGCG Trim3; Berp; Rnf22 rno-miR-24 172 198 GACAAGGACGAC----UUGACUCGGU- ||||:|||| :||||:|: : -GGUUCUUGCUUUGGUGACUGGGUGGG Trim3; Berp; Rnf22 rno-miR-292-3p 77 97 UGUGAGUUUUGGACCGCCGUGAA :| | |:||| ||| ||||| -GGC-C-AGACCCGGCAGCACUG Trim3; Berp; Rnf22 rno-miR-296 178 202 -UGU--CCUAACUCCCCCCCGGGA :| || ||| |||||: UGCUUUGGUGACUGGGUGGGCCUG Trim3; Berp; Rnf22 rno-miR-298 292 330 -CCU--UCUUGUCGG-GA-------------GGAGACGG ||: ||||||||| || |||||| GGGGCCAGAACAGCCUCUUACUUCAGAAGUCCCUCUGG- Trim3; Berp; Rnf22 rno-miR-29c* 34 57 -CUUGUGGUCCUCUUUAGCCAGU- |:||| :|||:| :||:|| || CGGACA-UAGGGGUGAUUGGACAA Trim3; Berp; Rnf22 rno-miR-30e 203 226 AGGUCAG--UUCCUACAAAUGU- |::||| |||||||| |:|| ACUGGUCCCAAGGAUGUGUGCAG Trim3; Berp; Rnf22 rno-miR-320 271 291 AAGCGGGAGAGUU-GGGUCGAAAA :||:|||| | |||||| -CUGCUCUCUGACCCCCAGCC--- Trim3; Berp; Rnf22 rno-miR-324-3p 84 111 -GGUCGUCGUGG---AC-CCCGUCACC- ||:|||||||: || |||| |||| CCCGGCAGCACUGAAUGUGGGC-GUGGG Trim3; Berp; Rnf22 rno-miR-326 187 209 -UGACCUCCUUCCCGGGUCU--CC- |||||: |||||::|| || GACUGGGU---GGGCCUGGACUGGU Trim3; Berp; Rnf22 rno-miR-327 261 296 -UGGGAGU----------AC-GGGGAGU----UCC- ||||||| || |||| || :|| CACCCUCAGUCUGCUCUCUGACCCC-CAGCCUGGGG Trim3; Berp; Rnf22 rno-miR-328 49 84 UGCCU----UCCCG-------UCUCU-CCCGGUC- :||| ||||: ||||: ||||||| UUGGACAAGAGGGUCUGGCUAAGAGGUGGGCCAGA Trim3; Berp; Rnf22 rno-miR-329 54 78 -UUUUUCCA-AUCGA--C-CCACACAA ||:|:||| |:||| | |||| CAAGAGGGUCUGGCUAAGAGGUGG--- Trim3; Berp; Rnf22 rno-miR-330 1 24 AGAGACG----UCCGGGACACGAAACG- |||| :|||||| |||| || ---CUGCACAAGGGCCCU--GCUUGGCU Trim3; Berp; Rnf22 rno-miR-331 188 210 AAGAUCCUAUCCGGGUCC--CCG- ||:|| |:||||::| ||: -ACUGGG-UGGGCCUGGACUGGUC Trim3; Berp; Rnf22 rno-miR-336 19 50 UCUGA---UCUAUACCU--------UCCCACU- |:|| :|| ||| :|||||| UGGCUCAUGGAG--GGACGGACAUAGGGGUGAU Trim3; Berp; Rnf22 rno-miR-339 19 47 ACUCGAGGACCUCCU-------GUCCCU- :|||| ||||||: :||||: -UGGCUCAUGGAGGGACGGACAUAGGGGU Trim3; Berp; Rnf22 rno-miR-342 186 228 -CUG-CCCACGCUAA-------AG-------ACACAC-UCU ||| ||||| | || |||||| ||| UGACUGGGUGGGCCUGGACUGGUCCCAAGGAUGUGUGCAGAG Trim3; Berp; Rnf22 rno-miR-343 13 38 AGAC---CCGUGUGCCUCCCU-CU- ||| ||| ||:||||||| |: CCUGCUUGGCUCAUGGAGGGACGGA Trim3; Berp; Rnf22 rno-miR-345 47 69 CGUGACCUGAUC-CCCAG-UCGU |:||||| || ||||| :|| -GAUUGGACAAGAGGGUCUGGCU Trim3; Berp; Rnf22 rno-miR-346 69 95 -UCUCCGUCCG---UGAGUCCGUCUGU- |||||::||| || | ||||| || AAGAGGUGGGCCAGAC-CCGGCAG-CAC Trim3; Berp; Rnf22 rno-miR-347 8 37 ACCCG-------CUGGG--UCUCCCUGU- |||| |:|:| :|||||||: AGGGCCCUGCUUGGCUCAUGGAGGGACGG Trim3; Berp; Rnf22 rno-miR-349 40 67 -UCUCCAAU--UCUGUCGUCCC-GAC- ||:||| :|||| |||| ||| UAGGGGUGAUUGGACAAGAGGGUCUGG Trim3; Berp; Rnf22 rno-miR-34a 51 83 -UUGUU------GGUCGAUUCUGUGA-CGGU- :|||| |::||||||| : |||| GGACAAGAGGGUCUGGCUAAGAGGUGGGCCAG Trim3; Berp; Rnf22 rno-miR-34c 266 293 CGUUAGUCGAUUGAUGUGA---CGGA- ||:|| ||| ||: |||| UCAGUCUGCUCUCUGACCCCCAGCCUG Trim3; Berp; Rnf22 rno-miR-351 19 47 GUCCGAGU--UUCCC-GAG-GAGUCCCU- |||||| :|||| | | :||||: -UGGCUCAUGGAGGGACGGACAUAGGGGU Trim3; Berp; Rnf22 rno-miR-370 64 94 -UUGG---UCCAA--GGUG-GGGUCGUCCG- ::|: |||| ||| |||:|||| | UGGCUAAGAGGUGGGCCAGACCCGGCAG-CA Trim3; Berp; Rnf22 rno-miR-378 191 218 UGUGUCCUGGACCU---CAG---UCCUC : ||:|||||| ||| |||| -GGGUGGGCCUGGACUGGUCCCAAGGAU Trim3; Berp; Rnf22 rno-miR-383 263 283 UCGGUGUCAGUGGA-AGACUAGA || ||||| || ||||| -CCCUCAGUCUGCUCUCUGAC-- Trim3; Berp; Rnf22 rno-miR-409-3p 75 95 CCCCAAG-UGGCUCGUUGUAA ||| ||| :|||:|| UGGGCCAGACCCGGCAGCAC- Trim3; Berp; Rnf22 rno-miR-409-5p 171 192 GUUUCA---ACGAGCCCAUUGGA :|| ||||: |||:||: --CGGUUCUUGCUUUGGUGACUG Trim3; Berp; Rnf22 rno-miR-422b 272 301 -CGGAAGACUGA-GGU----UCA-GGUCA ||: |||||| ||| :| |||| UGCUCUCUGACCCCCAGCCUGGGGCCAGA Trim3; Berp; Rnf22 rno-miR-483 15 50 -UGUUCUGC---CCUCCCC-------UCCUCACU- :| |:| |||||| |||:|||| UGCUUGGCUCAUGGAGGGACGGACAUAGGGGUGAU Trim3; Berp; Rnf22 rno-miR-541 290 327 -ACACUGGU--UGU----------AGUC-UUAGGGAA || |:||| ||| |||| |:||||| CUGGGGCCAGAACAGCCUCUUACUUCAGAAGUCCCUC Trim3; Berp; Rnf22 rno-miR-543 69 103 -UCUUCACGUGG----------CG---CUUACAAA |||:||| :|| || |||||| AAGAGGUGGGCCAGACCCGGCAGCACUGAAUGUG- Trim3; Berp; Rnf22 rno-miR-92 194 227 GUCCGGCCCUGUU-------------CACGUUAU :|||| |||| |||||: UGGGCCUGGACUGGUCCCAAGGAUGUGUGCAGA- Trim3; Berp; Rnf22 rno-miR-96 108 131 -UCGUUUUUACACGAUC-ACGGUUU :||| :|||||| |||| GGGCAUGGAUGUGCCCAAUGCCC-- Trim3; Berp; Rnf22 rno-miR-98 296 318 UUGUUAUGUUGAAUGAUGGAGU- ||: |||:| :|||:||| -CCAGAACAGCCUCUUACUUCAG Trim3; Berp; Rnf22 rno-miR-99b 25 49 -GCGUUCCAGCCAAGAUGCCCAC- :| |:|| ||| || ||||| AUGGAGGGACGGACAUAGGGGUGA Trim3; Berp; Rnf22 rno-let-7a 295 316 uugauaUGUUGGAUGAUGGAGU |||:||| :|||:||| gccagaACAGCCTCTTACTTCA Trim3; Berp; Rnf22 rno-let-7b 294 316 uuGGU-GUGUUGGAUGAUGGAGU ||| |||:||| :|||:||| ggCCAGAACAGCCTCTTACTTCA Trim3; Berp; Rnf22 rno-let-7c 294 316 uuGGU-AUGUUGGAUGAUGGAGU ||| |||:||| :|||:||| ggCCAGAACAGCCTCTTACTTCA Trim3; Berp; Rnf22 rno-let-7e 296 316 ugauaUGUUGGAGGAUGGAGU |||:||||:|||:||| ccagaACAGCCTCTTACTTCA Trim3; Berp; Rnf22 rno-miR-106b 145 164 UAGACGUGACAGUCGUGAAAU | | ||| ||: |||||||| AACCCCACGGTT-GCACTTTA Trim3; Berp; Rnf22 rno-miR-10a 163 195 guguuUAAGCCUAGA----------UGUCCCAu |||||| ||| || |||| tatttATTCGGTTCTTGCTTTGGTGACTGGGTg Trim3; Berp; Rnf22 rno-miR-130a 125 162 UACGGGAA---AA-------UUG------UAACGUGAc |||||||| || ||| :||||||| ATGCCCTTCCCTTCCTCCCCAACCCCACGGTTGCACTt Trim3; Berp; Rnf22 rno-miR-130b 125 162 UACGGGA----AAGUAG------------UAACGUGAc ||||||| ||| || :||||||| ATGCCCTTCCCTTCCTCCCCAACCCCACGGTTGCACTt Trim3; Berp; Rnf22 rno-miR-132 186 209 gCUGGUACCGAC----AUCUGACAAu ||| ||| || |:||||| | tGAC--TGGGTGGGCCTGGACTGGTc Trim3; Berp; Rnf22 rno-miR-133b 60 82 aucGACCAACU-UCC-CCUGGUu |||| | | ||| ||:||| ggtCTGGCTAAGAGGTGGGCCAg Trim3; Berp; Rnf22 rno-miR-140* 167 187 ACAGGCACCAAGAUGGGACACCAu | |:| |||||| : || |||| TATTC--GGTTCT-TGCTTTGGTg Trim3; Berp; Rnf22 rno-miR-145 28 54 uUCCCU--AAGGA-CCCUUUUGACCUG ||||| | | |||: :|:||||| gAGGGACGGACATAGGGGTGATTGGAC Trim3; Berp; Rnf22 rno-miR-148b 76 97 uguuucaagacacuaCGUGACU ||||||| gggccagacccggcaGCACTGA Trim3; Berp; Rnf22 rno-miR-151 256 275 GGAGUUCCUCGGAGUCAGAuca |||:| | ||||||||| CCTTA--CACCCTCAGTCTgct Trim3; Berp; Rnf22 rno-miR-17 143 164 uGAUGGACGUGACAUUCGUGAAAc | ||| ||| || ||||||| cCAACC-CCACGGT-TGCACTTTa Trim3; Berp; Rnf22 rno-miR-181a 80 102 ugaguGGCUGUCGCAACUUACAa |||:|||| ||||||| cagacCCGGCAGCACTGAATGTg Trim3; Berp; Rnf22 rno-miR-181b 78 102 gGGU---GGCUGUCGUUACUUACAa ||| |||:||||| ||||||| gCCAGACCCGGCAGCACTGAATGTg Trim3; Berp; Rnf22 rno-miR-181c 80 102 ugaguGGCUGUC-CAACUUACAa |||:||| ||||||| cagacCCGGCAGCACTGAATGTg Trim3; Berp; Rnf22 rno-miR-184 262 284 UGGGAAU-AGUCAAGAGGCAGGu ||||| | || | ||||:| || ACCCTCAGTCTGCTCTCTGACCc Trim3; Berp; Rnf22 rno-miR-185 317 338 CUUGACGGA----AAGAGAGGu ||| | ||| || ||||| GAAGTCCCTCTGGTTGTCTCCc Trim3; Berp; Rnf22 rno-miR-189 93 113 UGAC-UAUAGUCGAGUCAUCCGUg |||| ||:| :|| ||:|||| ACTGAATGTGGGC---GTGGGCAt Trim3; Berp; Rnf22 rno-miR-193 182 203 gACC-CUGAAACAUCCGGUCaa ||| |||| ||:|||| | tTGGTGACTGGGTGGGCCTGga Trim3; Berp; Rnf22 rno-miR-204 34 63 uCC-GUAUC----CUA--CUG-UUUCCCuu || ||||| ||| ||| |:|||| cGGACATAGGGGTGATTGGACAAGAGGGtc Trim3; Berp; Rnf22 rno-miR-205 8 32 guCUGAGGC-CACC--UUACUUCCu |:| |:| ||| |||:||| agGGCCCTGCTTGGCTCATGGAGGg Trim3; Berp; Rnf22 rno-miR-207 28 58 uUCCCU-CCU-----CUCGGU--CCUCUUCg ||||| ||| |:|: | ||| ||| gAGGGACGGACATAGGGGTGATTGGACAAGa Trim3; Berp; Rnf22 rno-miR-20a 144 164 GAUGGACGUGAUAUUCGUGAAAU | ||| ||| :| |||||||| CAACC-CCACGGT-TGCACTTTA Trim3; Berp; Rnf22 rno-miR-210 266 288 AGUC-GGCGACAGUGUGCGUGUC |||| |:||| || || | ||| TCAGTCTGCTCTCTGACCCCCAG Trim3; Berp; Rnf22 rno-miR-211 34 63 uCC-GUUUC----CUA--CUG-UUUCCCuu || || || ||| ||| |:|||| cGGACATAGGGGTGATTGGACAAGAGGGtc Trim3; Berp; Rnf22 rno-miR-212 191 209 CCGGCACUGACCUCUGACAAu || :| | ||| ||||| | GGGTGGGCCTG--GACTGGTc Trim3; Berp; Rnf22 rno-miR-214 185 207 gACGGACAGACACGGAC--GACa || ||| || ||||| ||| gTGACTGGGTGGGCCTGGACTGg Trim3; Berp; Rnf22 rno-miR-22* 13 35 uuuCGAAC--GGUGACUUCUUGa ||||| :||: ||:|:|| cctGCTTGGCTCATGGAGGGACg Trim3; Berp; Rnf22 rno-miR-24 171 200 GACAAGGACG-----ACU---UGACUCGGu | ||||:||| ||| : ||:||| CGGTTCTTGCTTTGGTGACTGGGTGGGCCt Trim3; Berp; Rnf22 rno-miR-292-3p 74 96 ugugaGUUUUGGACCGCCGUGAa | |:||| ||| ||||| gtgggCCAGACCCGGCAGCACTg Trim3; Berp; Rnf22 rno-miR-296 181 201 uguCCUAACU--CCCCCCCGGga || ||| ||| ||||| tttGG--TGACTGGGTGGGCCtg Trim3; Berp; Rnf22 rno-miR-298 293 330 CCU--UCUUGUCGG-----GA---------GGAGACgg ||: ||||||||| || |||||| GGGCCAGAACAGCCTCTTACTTCAGAAGTCCCTCTGgt Trim3; Berp; Rnf22 rno-miR-29c* 35 55 CUUGUGGUCCUCUUUAGCCAGU |:||| :|||:| :||:|| || GGACA-TAGGGGTGATTGGACA Trim3; Berp; Rnf22 rno-miR-320 269 293 aAG-CGGGAGAGU-UGGGUCGAAaa || ||:|||| | |||||| | gTCTGCTCTCTGACCCCCAGCCTgg Trim3; Berp; Rnf22 rno-miR-324-3p 85 109 GGUCGUCGUGG---AC-CCCGUCACC ||:|||||||: || |||| |||| CCGGCAGCACTGAATGTGGGC-GTGG Trim3; Berp; Rnf22 rno-miR-326 203 228 UGACC-----UCCUUCCCGGGUCUCc ||||| |||| | |: ||||| ACTGGTCCCAAGGATGTGTGCAGAGc Trim3; Berp; Rnf22 rno-miR-327 250 271 UGGGA--GUACG-GGGAGUucc ||||| | | | |||||| ACCCTCCCTTACACCCTCAgtc Trim3; Berp; Rnf22 rno-miR-328 58 82 UGCCUUCCCG--UCU-CUCCCGGUC | || ||| ||| | ||||||| AGGGTCTGGCTAAGAGGTGGGCCAG Trim3; Berp; Rnf22 rno-miR-329 55 80 UUUUUCCA-AUCGA--C-CCACACaa ||:|:||| |:||| | |||| | AAGAGGGTCTGGCTAAGAGGTGGGcc Trim3; Berp; Rnf22 rno-miR-330 165 185 AGAGACGUCCGGGACACGAAACg |:| | | ||::|| ||||||| TTTATTC-GGTTCT-TGCTTTGg Trim3; Berp; Rnf22 rno-miR-331 197 217 aaGAUCCUAUCCGGGUCCCcg ||:| |:| |||| || gcCTGGACTGGTCCCAAGGat Trim3; Berp; Rnf22 rno-miR-336 31 48 uCUGAUCUAUACCUUCCCACU ||| :|| || |:|||||| gGAC-GGACAT--AGGGGTGA Trim3; Berp; Rnf22 rno-miR-342 202 226 CUGCCCACGCUAAAGACACAC-UCU ||| ||| | | |||||| ||| GACTGGTCCCAAGGATGTGTGCAGA Trim3; Berp; Rnf22 rno-miR-342 169 198 cuGCC---CACG---CUAAAGACACACUCu ||| ||| |:| ||| |||:| ttCGGTTCTTGCTTTGGTGACTGGGTGGGc Trim3; Berp; Rnf22 rno-miR-343 16 35 aGACCCGUGUGCCUCCCUcu || ||| ||:||||||| gCTTGGCTCATGGAGGGAcg Trim3; Berp; Rnf22 rno-miR-345 46 68 cgUGACCUGAUC-CCCAG-UCGu |:||||| || ||||| :|| tgATTGGACAAGAGGGTCTGGCt Trim3; Berp; Rnf22 rno-miR-346 70 95 UCUCCGUCCG---UGAGUCCGUC-UGu |||||::||| || | ||||| || AGAGGTGGGCCAGAC-CCGGCAGCACt Trim3; Berp; Rnf22 rno-miR-347 15 35 ACCCGCUGGGU--CUCCCUGu || :|:|:|| ||||||| TGCTTGGCTCATGGAGGGACg Trim3; Berp; Rnf22 rno-miR-349 41 65 UCUCCA--AUUCUGUCGUCCC-GAC ||:||| | :|||| |||| ||| AGGGGTGATTGGACAAGAGGGTCTG Trim3; Berp; Rnf22 rno-miR-34a 80 99 uUGUUGGUCGAUUCUGUGACggu | | ||:|| || ||||| cAGACCCGGC--AG-CACTGaat Trim3; Berp; Rnf22 rno-miR-351 1 29 gucCGAGUUUCC----CGAG--GAGUCCCU || |||:|| |||: |||| ||| -ctGCACAAGGGCCCTGCTTGGCTCATGGA Trim3; Berp; Rnf22 rno-miR-370 68 93 uuggUCCA--AGGU-GGGGUCGUCcg |||| ||| |||:|||| taagAGGTGGGCCAGACCCGGCAGca Trim3; Berp; Rnf22 rno-miR-378 190 217 uguguCCUGGACCU---CAG---UCCUc ||:|||||| ||| |||| tgggtGGGCCTGGACTGGTCCCAAGGAt Trim3; Berp; Rnf22 rno-miR-383 262 284 UCGGUGUCAGUGGA-AGACUAGa | || ||||| || ||||| | ACCCTCAGTCTGCTCTCTGACCc Trim3; Berp; Rnf22 rno-miR-409-3p 76 95 CCCCAAGUGGCUCGUUGUaa ||| ||| :|||:|| GGGCCAGACCCGGCAGCAct Trim3; Berp; Rnf22 rno-miR-409-5p 172 191 guuucAACGAGCCCAUUGga |||||: |||:|| ggttcTTGCTTTGGTGACtg Trim3; Berp; Rnf22 rno-miR-422b 273 300 CGGAAGACUGAGG------UUCAGGUCa ||: |||||| || ::| |||| GCTCTCTGACCCCCAGCCTGGGGCCAGa Trim3; Berp; Rnf22 rno-miR-483 23 48 uGUUCUGCCCUCCC---CUCCUCACU || |: |||| || |||:|||| tCATGGAGGGACGGACATAGGGGTGA Trim3; Berp; Rnf22 rno-miR-485 289 309 cuuaaguaGUGCCGGUCGGAGA || | |||||||| cctggggcCA-GAACAGCCTCT Trim3; Berp; Rnf22 rno-miR-540 266 284 gGUCCUAG-CUGGAGACUGGa ||| || | :|||||||| tCAG--TCTGCTCTCTGACCc Trim3; Berp; Rnf22 rno-miR-541 303 326 acacuGGUUGUAGUC-UUAGGGAa |: || |||| |:||||| agcctCTTACTTCAGAAGTCCCTc Trim3; Berp; Rnf22 rno-miR-543 70 103 UCUUCAC---GU---GGC-------GCUUACAaa |||:||| || ||| :|||||| AGAGGTGGGCCAGACCCGGCAGCACTGAATGTgg Trim3; Berp; Rnf22 rno-miR-92 204 227 GUCC--GG-CCCUGUUCACGUuau | || || |||:: ||||| CTGGTCCCAAGGATGTGTGCAgag Trim3; Berp; Rnf22 rno-miR-93 144 164 GAUGGACGUGCUUGUCGUGAAAc | ||| |||| :: ||||||| CAACC-CCACG-GTTGCACTTTa Trim3; Berp; Rnf22 rno-miR-96 105 125 uCGUUUUUACACGAUCACGGUUU |:::: ||| | | ||||| || cGTGGGCATG-GAT-GTGCCCAA Trim3; Berp; Rnf22 rno-miR-98 295 316 uuGUUAUGUUGAAUGAUGGAGU ||: |||:| | :|||:||| gcCAGAACAGCCTCTTACTTCA Trim3; Berp; Rnf22 rno-miR-99b 26 47 gCGUUCCAGCCAAGAUGCCCAC | |:|| ||| || ||||| tGGAGGGACGGACATAGGGGTG Trim3; Berp; Rnf22 rno-miR-106b 157 164 UAGAC-----------------------GUGACAGUCGUGAAAU ||| ||: |||||||| CCAAUGCCCUUCCCUUCCUCCCCAACCCCACGGUU-GCACUUUAU Trim3; Berp; Rnf22 rno-miR-130a 155 162 -----UACGGGAAAAU---------------UG-UAACGUGAC |||||||| || :||||||| GCCCAAUGCCCUUCCCUUCCUCCCCAACCCCACGGUUGCACUU Trim3; Berp; Rnf22 rno-miR-130b 155 162 -----UACGGGAA----AGUAG------------UAACGUGAC |||||||| || || :||||||| GCCCAAUGCCCUUCCCUUCCUCCCCAACCCCACGGUUGCACUU Trim3; Berp; Rnf22 rno-miR-17 157 164 UGA---------------------UGGACGUGACAUUCGUGAAAC ||| ||| || ||||||| CCAAUGCCCUUCCCUUCCUCCCCAACCC-CACGGUU-GCACUUUA Trim3; Berp; Rnf22 rno-miR-181a 95 102 UGAGU--------------------GGCUGUCGCAACUUACAA |||:|||| ||||||| GGUCUGGCUAAGAGGUGGGCCAGACCCGGCAGCACUGAAUGUG Trim3; Berp; Rnf22 rno-miR-181b 95 102 G------------------GGU---GGCUGUCGUUACUUACAA ||| |||:||||| ||||||| GGUCUGGCUAAGAGGUGGGCCAGACCCGGCAGCACUGAAUGUG Trim3; Berp; Rnf22 rno-miR-181c 95 102 UGAGU--------------------GGCUGUCCA-ACUUACAA |||:||| ||||||| GGUCUGGCUAAGAGGUGGGCCAGACCCGGCAGCACUGAAUGUG Trim3; Berp; Rnf22 rno-miR-20a 157 164 GA----------------------UGGACGUGAUAUUCGUGAAAU ||| ||| |||||||| CCAAUGCCCUUCCCUUCCUCCCCAACCC-CACGGUU-GCACUUUAU Trim3; Berp; Rnf22 rno-miR-330 178 185 AGA---------GACGU------------CCGGGACACGAAACG :|||| ||::|| ||||||| CCAACCCCACGGUUGCACUUUAUUUAUUCGGUUCU-UGCUUUGG Trim3; Berp; Rnf22 rno-miR-485 302 309 CUUAAGUAG----------------UGCCG-----GUCGGAGA : ||| |||||||| CAGUCUGCUCUCUGACCCCCAGCCUGGGGCCAGAACAGCCUCUU Trim3; Berp; Rnf22 rno-miR-540 277 284 ----------------------GGUCCUAG-CUGGAGACUGGA || :|| | |||||||| CUUUACACACCCUCCCUUACACCCUCAGUCUGCUCUCUGACCC Trim3; Berp; Rnf22 rno-miR-93 157 164 GA----------------------UGGACGUGCUUGUCGUGAAAC ||| ||||: ||||||| CCAAUGCCCUUCCCUUCCUCCCCAACCC-CACGGUU-GCACUUUA

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Trim3 RAID00047558 rno-miR-17-5p miRNA MIMAT0000786 Trim3 mRNA 83616 Prediction 0.2202 Trim3 RAID00083380 rno-miR-130a-3p miRNA MIMAT0000836 Trim3 mRNA 83616 Prediction 0.2202 Trim3 RAID00246666 rno-miR-301a-3p miRNA MIMAT0000552 Trim3 mRNA 83616 Prediction 0.2202 Trim3 RAID00344559 rno-miR-106b-5p miRNA MIMAT0000825 Trim3 mRNA 83616 Prediction 0.2202 Trim3 RAID00385583 rno-miR-702-3p miRNA MIMAT0017885 Trim3 mRNA 83616 Prediction 0.1828 Trim3 RAID00399704 rno-miR-130b-3p miRNA MIMAT0000837 Trim3 mRNA 83616 Prediction 0.2202 Trim3 RAID00830617 rno-miR-365-5p miRNA MIMAT0017184 Trim3 mRNA 83616 Prediction 0.1828 Trim3 RAID01210472 rno-miR-485-5p miRNA MIMAT0003203 Trim3 mRNA 83616 Prediction 0.1828 Trim3 RAID01218598 rno-miR-93-5p miRNA MIMAT0000817 Trim3 mRNA 83616 Prediction 0.2202 Trim3 RAID01687284 rno-miR-301b-3p miRNA MIMAT0005304 Trim3 mRNA 83616 Prediction 0.2202 Trim3 RAID02113622 rno-miR-20a-5p miRNA MIMAT0000602 Trim3 mRNA 83616 Prediction 0.2202 Trim3 RAID02230931 rno-miR-137-3p miRNA MIMAT0000843 Trim3 mRNA 83616 Prediction 0.2202 Trim3 RAID02523878 rno-miR-455-3p miRNA MIMAT0017308 Trim3 mRNA 83616 Prediction 0.1828 Trim3 RAID02699013 rno-miR-346 miRNA MIMAT0000596 Trim3 mRNA 83616 Prediction 0.1828 Trim3 RAID02875153 rno-miR-448-5p miRNA MIMAT0017177 Trim3 mRNA 83616 Prediction 0.1828 Trim3 RAID02928162 rno-miR-291b miRNA MIMAT0017822 Trim3 mRNA 83616 Prediction 0.1828 Trim3 RAID03034720 rno-miR-1956-5p miRNA MIMAT0035735 Trim3 mRNA 83616 Prediction 0.1828 Trim3 RAID03246488 rno-miR-92a-1-5p miRNA MIMAT0017107 Trim3 mRNA 83616 Prediction 0.1828 Trim3 RAID03438137 rno-miR-20b-5p miRNA MIMAT0003211 Trim3 mRNA 83616 Prediction 0.2202 Trim3 RAID03614681 rno-miR-92a-2-5p miRNA MIMAT0017108 Trim3 mRNA 83616 Prediction 0.1828