DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000568 rno-miR-330* 498492 Ccnb1ip1 agAGACGUCCGGGACACGAA-ACg |:|| ||| ||||||| || auUUUGGAGG---UGUGCUUAUGc 2 22 403 423 [rn4:15:26771223-26771243:-] 0.5328 125 0 -21.59 -0.2621 MIMAT0000607 rno-miR-7a* 498492 Ccnb1ip1 uaccgucugacACUAAACAACa | |||||||| uacugauaaaaUUAUUUGUUGa 2 12 482 503 [rn4:15:26771143-26771164:-] 0.5328 147 7 -8.79 -1.2886 MIMAT0000607 rno-miR-7a* 498492 Ccnb1ip1 uaccgucUGACACUAAACAAca |:|| ||||||| ugauuucAUUGGUAUUUGUUuu 3 16 501 522 [rn4:15:26771124-26771145:-] 0.5355 135 0 -6.73 -0.1320 MIMAT0004720 rno-miR-30e* 498492 Ccnb1ip1 cgacaUUUGUAGG-CUGACUUUc ||| ||:: ||||| | uuuaaAAAAAUUUAUACUGAUAa 2 18 468 490 [rn4:15:26771156-26771178:-] 0.5328 120 0 -4.47 -0.1874 MIMAT0004722 rno-miR-30d* 498492 Ccnb1ip1 cgucgUUUGUAGA-CUGACUUUc ||| ||:| ||||| | uuuaaAAAAAUUUAUACUGAUAa 2 18 468 490 [rn4:15:26771156-26771178:-] 0.5328 124 0 -6.58 -0.1874 MIMAT0000809 rno-miR-30a* 498492 Ccnb1ip1 cgacgUUUGUAGG-CUGACUUUc ||| ||:: ||||| | uuuaaAAAAAUUUAUACUGAUAa 2 18 468 490 [rn4:15:26771156-26771178:-] 0.5328 120 0 -4.81 -0.1874 MIMAT0004743 rno-miR-300-5p 498492 Ccnb1ip1 uguuuccuAUUGGAGAGAAGUu |:: :|||||||| ugcaucccUGGGUUCUCUUCAc 2 15 29 50 [rn4:15:26771596-26771617:-] 0.5060 150 7 -14.49 -0.3823 MIMAT0003162 rno-miR-1* 498492 Ccnb1ip1 cccaUGUAUUUC-UUCAUACACg :| |: || :||||||| guugGCUUGCAGUCGGUAUGUGg 2 19 69 91 [rn4:15:26771555-26771577:-] 0.4775 145 7 -12.56 -0.1334 MIMAT0003380 rno-miR-505 498492 Ccnb1ip1 ccuuuggucguucACAACUg |||||| ugauaaaauuauuUGUUGAu 2 8 485 504 [rn4:15:26771142-26771161:-] 0.5328 120 6 -7.25 -0.1391 MIMAT0005281 rno-miR-871 498492 Ccnb1ip1 acacUGGCCGUGGUUAG-ACUUAu || ||||:: || ||||| gggcACGGGCAUU--UCAUGAAUg 2 20 123 144 [rn4:15:26771502-26771523:-] 0.4775 120 0 -17.41 -0.3921 MIMAT0005332 rno-miR-708* 498492 Ccnb1ip1 gauCUUCGAGUGUCAGAUCAAc ||| ||| ||||||| cauGAAUGUCAGUCUCUAGUUu 2 20 137 158 [rn4:15:26771488-26771509:-] 0.4719 155 7 -9.78 -0.1263 MIMAT0012832 rno-miR-568 498492 Ccnb1ip1 cacacaUAUGUAAAUAUGua | | |||||||| cuuuaaAAAAAUUUAUACug 3 15 467 486 [rn4:15:26771160-26771179:-] 0.5328 134 0 -5.51 -0.2858 MIMAT0012846 rno-miR-201 498492 Ccnb1ip1 uucUUGUUACGGAAUGACUca || ||| :: |||||| uaaAAAAAU-UUAUACUGAua 3 19 470 489 [rn4:15:26771157-26771176:-] 0.5328 132 0 -5.01 -0.4113 MIMAT0012849 rno-miR-295 498492 Ccnb1ip1 cuUCACACGGGGUGUA-AACUCa |||||| :::|| ||||| ccAGUGUG---UGUAUGUUGAGu 2 21 263 282 [rn4:15:26771364-26771383:-] 0.5328 120 0 -16.99 -0.4128 MIMAT0004650 rno-miR-340-5p 498492 Ccnb1ip1 uuagucagaguaacgAAAUAUu |||||| uuaucuuuaaaaaaaUUUAUAc 2 8 463 484 [rn4:15:26771162-26771183:-] 0.5328 120 6 -2.54 -0.1819 MIMAT0000795 rno-miR-25 498492 Ccnb1ip1 aguCUGGCUCUGUUCACGUUAc |:|:|: ||||||||| aguGGCUGG---AAGUGCAAUu 2 20 425 443 [rn4:15:26771203-26771221:-] 0.5328 151 7 -16.93 -0.5186 MIMAT0000801 rno-miR-29b 498492 Ccnb1ip1 uuGUGACUAAAG---UUUACCA-CGAu :| ||:| |: ||||||| ||| aaUAAUGGUCUUAGAAAAUGGUGGCUu 2 22 348 374 [rn4:15:26771272-26771298:-] 0.5328 124 0 -14.66 -0.9772 MIMAT0000804 rno-miR-30c 498492 Ccnb1ip1 cgacucucACAUCCUACAAAUGu |||: ||||||: gaugcauaUGUGUUCUGUUUAUc 2 16 445 467 [rn4:15:26771179-26771201:-] 0.5328 131 0 -8.20 -0.1115 MIMAT0000805 rno-miR-30e 498492 Ccnb1ip1 gaaggucaguuccuACAAAUGu ||||||: augcauauguguucUGUUUAUc 2 9 446 467 [rn4:15:26771179-26771200:-] 0.5328 124 0 -4.86 -0.1160 MIMAT0000806 rno-miR-30b-5p 498492 Ccnb1ip1 ucgacucACAUCCUACAAAUGu |||: ||||||: augcauaUGUGUUCUGUUUAUc 2 16 446 467 [rn4:15:26771179-26771200:-] 0.5328 131 0 -8.51 -0.1115 MIMAT0000807 rno-miR-30d 498492 Ccnb1ip1 gaaggucagccccuACAAAUGu ||||||: augcauauguguucUGUUUAUc 2 9 446 467 [rn4:15:26771179-26771200:-] 0.5328 124 0 -5.00 -0.1160 MIMAT0000808 rno-miR-30a 498492 Ccnb1ip1 gaaggucagcuccuACAAAUGu ||||||: augcauauguguucUGUUUAUc 2 9 446 467 [rn4:15:26771179-26771200:-] 0.5328 124 0 -5.20 -0.1160 MIMAT0000811 rno-miR-32 498492 Ccnb1ip1 acguugaaucaUUACACGUUAu :| ||||||| gccaguggcugGAAGUGCAAUu 2 12 422 443 [rn4:15:26771203-26771224:-] 0.5328 143 7 -13.85 -0.5221 MIMAT0000816 rno-miR-92a 498492 Ccnb1ip1 guCCGGCCCUGUUCACGUUAu |||:|| ||||||||| guGGCUGG---AAGUGCAAUu 2 20 426 443 [rn4:15:26771203-26771220:-] 0.5328 159 7 -21.82 -0.5116 MIMAT0000838 rno-miR-132 498492 Ccnb1ip1 gcugguaccgacaUCUGACAAu |||||||| auuuuuuauuucaAGACUGUUu 2 10 4 25 [rn4:15:26771621-26771642:-] 0.5345 145 7 -11.09 -0.7365 MIMAT0000840 rno-miR-134 498492 Ccnb1ip1 ggGGAGACCAGUUGGUCAGUGu || :|| ||| ||||||| ugCCAUUGCUCACACAGUCACa 2 21 158 179 [rn4:15:26771467-26771488:-] 0.4663 164 7 -22.12 -0.7464 MIMAT0000850 rno-miR-144 498492 Ccnb1ip1 ucaUGUAGUAGAUAUGACau | | ||:||||||| uuaAAAAAAUUUAUACUGau 3 18 469 488 [rn4:15:26771158-26771177:-] 0.5328 137 0 -10.77 -0.2352 MIMAT0000857 rno-miR-181c 498492 Ccnb1ip1 ugaGUGGCUGUCCA--ACUUACAa ||| |:|| | ||||||| gggCACGGGCAUUUCAUGAAUGUc 2 20 123 146 [rn4:15:26771500-26771523:-] 0.4775 154 7 -16.79 -0.1790 MIMAT0000858 rno-miR-181a 498492 Ccnb1ip1 ugaGUGGCUGU-CGCAACUUACAa ||| |:|| : ||||||| gggCACGGGCAUUUCAUGAAUGUc 2 21 123 146 [rn4:15:26771500-26771523:-] 0.4775 151 7 -17.17 -0.1740 MIMAT0000859 rno-miR-181b 498492 Ccnb1ip1 uggGUGGCUGU-CGUUACUUACAa ||| |:|| : |||||||| gggCACGGGCAUUUCAUGAAUGUc 2 21 123 146 [rn4:15:26771500-26771523:-] 0.4775 159 7 -18.63 -0.1740 MIMAT0000868 rno-miR-193 498492 Ccnb1ip1 ugacccugaaacaucCGGUCAa |||||| ugcauugauucuucuGCCAGUa 2 8 286 307 [rn4:15:26771339-26771360:-] 0.5328 120 6 -11.28 -0.1072 MIMAT0000875 rno-miR-200b 498492 Ccnb1ip1 caguaGUAAUGGUCCGU-CAUAAu | ||| ||| || ||||| auguaCUUUA-CAGUCAUGUAUUu 2 19 384 406 [rn4:15:26771240-26771262:-] 0.5328 124 0 -8.82 -0.3191 MIMAT0000876 rno-miR-203 498492 Ccnb1ip1 gaucaccaggauuuGUAAAGUg :|||||| -----cucauuuuuUAUUUCAa 2 9 1 17 [rn4:15:26771629-26771645:-] 0.5345 124 6 -6.01 -0.2917 MIMAT0000880 rno-miR-208 498492 Ccnb1ip1 uguucgaaaaacgagCAGAAUa |||||| auggccaaaauaaugGUCUUAg 2 8 340 361 [rn4:15:26771285-26771306:-] 0.5328 120 6 -12.78 -0.1169 MIMAT0000883 rno-miR-212 498492 Ccnb1ip1 accggcacugaccUCUGACAAu |||||||| auuuuuuauuucaAGACUGUUu 2 10 4 25 [rn4:15:26771621-26771642:-] 0.5345 145 7 -10.79 -0.7365 MIMAT0000887 rno-miR-217 498492 Ccnb1ip1 uagGUCAGUCAAGGAC-UAC-GUCAu |:| || ||| || ||| |||| gcaCGGGCAUUUCAUGAAUGUCAGUc 2 22 125 150 [rn4:15:26771496-26771521:-] 0.4775 132 0 -14.07 -0.4591 MIMAT0000890 rno-miR-221 498492 Ccnb1ip1 cuuugggucgucuguUACAUCGa ||||||| gcuguguuuauguuuAUGUAGCc 2 9 208 230 [rn4:15:26771416-26771438:-] 0.5328 140 7 -8.69 -0.7945 MIMAT0000891 rno-miR-222 498492 Ccnb1ip1 ugggucaucggucUACAUCGa ||||||| uguguuuauguuuAUGUAGCc 2 9 210 230 [rn4:15:26771416-26771436:-] 0.5328 140 7 -10.14 -0.7872 MIMAT0001538 rno-miR-429 498492 Ccnb1ip1 ugccGUAAUGGUCUGU-CAUAAu | ||| ||| || ||||| uguaCUUUA-CAGUCAUGUAUUu 2 19 385 406 [rn4:15:26771240-26771261:-] 0.5328 124 0 -8.82 -0.3191 MIMAT0001549 rno-miR-365 498492 Ccnb1ip1 uauuccuaaaaaUCCCCGUAAu | ||||||| uuugcuuagggcACGGGCAUUu 2 11 115 136 [rn4:15:26771510-26771531:-] 0.4775 142 7 -13.37 -0.2086 MIMAT0003117 rno-miR-361 498492 Ccnb1ip1 cauggggaccucuaaGACUAUu |||||| uuaaaaaaauuuauaCUGAUAa 2 8 469 490 [rn4:15:26771156-26771177:-] 0.5328 120 6 -9.58 -0.4881 MIMAT0003210 rno-miR-363 498492 Ccnb1ip1 auGUCUACCUA-UGGCACGUUAa ||| ||| | : ||||||| gcCAG-UGGCUGGAAGUGCAAUu 2 21 422 443 [rn4:15:26771203-26771224:-] 0.5328 149 7 -17.12 -0.5081 MIMAT0003381 rno-miR-499 498492 Ccnb1ip1 uuuGUAGUGACGUUCAGA-AUu ||| | ||: ||||| || uuuCAUGAAUGUCAGUCUCUAg 2 19 134 155 [rn4:15:26771491-26771512:-] 0.4719 126 0 -10.83 -0.4732 MIMAT0003381 rno-miR-499 498492 Ccnb1ip1 uuuguagugacguUCAGAAUu :|||||| uggccaaaauaauGGUCUUAg 2 9 341 361 [rn4:15:26771285-26771305:-] 0.5328 124 6 -7.88 -0.1157 MIMAT0005299 rno-miR-181d 498492 Ccnb1ip1 uggGUGGCUGU-UGUUACUUACAa ||| |:|| : |||||||| gggCACGGGCAUUUCAUGAAUGUc 2 21 123 146 [rn4:15:26771500-26771523:-] 0.4775 159 7 -19.50 -0.1740 MIMAT0005309 rno-miR-384-5p 498492 Ccnb1ip1 uguaACGGAUCCUUA--ACAAAUGu ||| || | :| ||||||: uugaUGCAUAUGUGUUCUGUUUAUc 2 20 443 467 [rn4:15:26771179-26771203:-] 0.5328 138 0 -7.13 -0.1172 MIMAT0005320 rno-miR-495 498492 Ccnb1ip1 uucuucACGUG-GUACAA-ACAAa ||||: ::|||| |||| auuugaUGCAUAUGUGUUCUGUUu 2 17 441 464 [rn4:15:26771182-26771205:-] 0.5328 123 0 -11.12 -0.9929 MIMAT0005320 rno-miR-495 498492 Ccnb1ip1 uucUUCACGUGG-UACAAACAAa :| | ||:: :| |||||| guuGAUUUCAUUGGUAUUUGUUu 2 20 499 521 [rn4:15:26771125-26771147:-] 0.5355 122 6 -6.63 -0.1382 MIMAT0005320 rno-miR-495 498492 Ccnb1ip1 uucuucacgugguacAAACAAa |||||| auacugauaaaauuaUUUGUUg 2 8 481 502 [rn4:15:26771144-26771165:-] 0.5328 120 6 -2.89 -0.2171 MIMAT0005339 rno-miR-873 498492 Ccnb1ip1 uccucugaguguucAAGGACg |||||| auuucaagacuguuUUCCUGc 2 8 11 31 [rn4:15:26771615-26771635:-] 0.5060 120 6 -15.41 -0.1107 MIMAT0005340 rno-miR-92b 498492 Ccnb1ip1 ccuCCGGCCCUGCUCACGUUAu |||: ||| |||||||| aguGGCU-GGA--AGUGCAAUu 2 20 425 443 [rn4:15:26771203-26771221:-] 0.5328 154 7 -21.75 -0.5116

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G054687 Ccnb1ip1 Rattus norvegicus 498492

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Ccnb1ip1 RAID00436076 rno-miR-144-3p miRNA MIMAT0000850 Ccnb1ip1 mRNA 498492 Prediction 0.1828 Ccnb1ip1 RAID00465408 rno-miR-210-5p miRNA MIMAT0017156 Ccnb1ip1 mRNA 498492 Prediction 0.1828 Ccnb1ip1 RAID00482866 rno-miR-181d-5p miRNA MIMAT0005299 Ccnb1ip1 mRNA 498492 Prediction 0.1828 Ccnb1ip1 RAID00571459 rno-miR-181a-5p miRNA MIMAT0000858 Ccnb1ip1 mRNA 498492 Prediction 0.1828 Ccnb1ip1 RAID00578354 rno-miR-495 miRNA MIMAT0005320 Ccnb1ip1 mRNA 498492 Prediction 0.1828 Ccnb1ip1 RAID00590909 rno-miR-92a-3p miRNA MIMAT0000816 Ccnb1ip1 mRNA 498492 Prediction 0.1828 Ccnb1ip1 RAID00759404 rno-miR-30b-5p miRNA MIMAT0000806 Ccnb1ip1 mRNA 498492 Prediction 0.1828 Ccnb1ip1 RAID00762008 rno-miR-134-5p miRNA MIMAT0000840 Ccnb1ip1 mRNA 498492 Prediction 0.1828 Ccnb1ip1 RAID00763843 rno-miR-181b-5p miRNA MIMAT0000859 Ccnb1ip1 mRNA 498492 Prediction 0.1828 Ccnb1ip1 RAID00796685 rno-miR-29b-3p miRNA MIMAT0000801 Ccnb1ip1 mRNA 498492 Prediction 0.1828 Ccnb1ip1 RAID00805013 rno-miR-1306-5p miRNA MIMAT0024851 Ccnb1ip1 mRNA 498492 Prediction 0.1828 Ccnb1ip1 RAID01054166 rno-miR-3065-5p miRNA MIMAT0017839 Ccnb1ip1 mRNA 498492 Prediction 0.1828 Ccnb1ip1 RAID01093598 rno-miR-212-3p miRNA MIMAT0000883 Ccnb1ip1 mRNA 498492 Prediction 0.1828 Ccnb1ip1 RAID01142012 rno-miR-208a-3p miRNA MIMAT0000880 Ccnb1ip1 mRNA 498492 Prediction 0.1828 Ccnb1ip1 RAID01200666 rno-miR-200b-3p miRNA MIMAT0000875 Ccnb1ip1 mRNA 498492 Prediction 0.1828 Ccnb1ip1 RAID01335203 rno-miR-1912-3p miRNA MIMAT0017865 Ccnb1ip1 mRNA 498492 Prediction 0.1828 Ccnb1ip1 RAID01339976 rno-miR-30e-5p miRNA MIMAT0000805 Ccnb1ip1 mRNA 498492 Prediction 0.1828 Ccnb1ip1 RAID01509110 rno-miR-429 miRNA MIMAT0001538 Ccnb1ip1 mRNA 498492 Prediction 0.1828 Ccnb1ip1 RAID01563478 rno-miR-30a-5p miRNA MIMAT0000808 Ccnb1ip1 mRNA 498492 Prediction 0.1828 Ccnb1ip1 RAID01584349 rno-miR-221-3p miRNA MIMAT0000890 Ccnb1ip1 mRNA 498492 Prediction 0.1828 Ccnb1ip1 RAID01606590 rno-miR-25-3p miRNA MIMAT0000795 Ccnb1ip1 mRNA 498492 Prediction 0.1828 Ccnb1ip1 RAID01761900 rno-miR-32-5p miRNA MIMAT0000811 Ccnb1ip1 mRNA 498492 Prediction 0.1828 Ccnb1ip1 RAID01809649 rno-miR-222-3p miRNA MIMAT0000891 Ccnb1ip1 mRNA 498492 Prediction 0.1828 Ccnb1ip1 RAID02010290 rno-miR-92b-3p miRNA MIMAT0005340 Ccnb1ip1 mRNA 498492 Prediction 0.1828 Ccnb1ip1 RAID02062578 rno-miR-132-3p miRNA MIMAT0000838 Ccnb1ip1 mRNA 498492 Prediction 0.1828 Ccnb1ip1 RAID02179575 rno-miR-30d-5p miRNA MIMAT0000807 Ccnb1ip1 mRNA 498492 Prediction 0.1828 Ccnb1ip1 RAID02230264 rno-miR-217-5p miRNA MIMAT0000887 Ccnb1ip1 mRNA 498492 Prediction 0.1828 Ccnb1ip1 RAID02503503 rno-miR-466c-3p miRNA MIMAT0017287 Ccnb1ip1 mRNA 498492 Prediction 0.1828 Ccnb1ip1 RAID02521552 rno-miR-6326 miRNA MIMAT0025065 Ccnb1ip1 mRNA 498492 Prediction 0.1828 Ccnb1ip1 RAID02865452 rno-miR-499-5p miRNA MIMAT0003381 Ccnb1ip1 mRNA 498492 Prediction 0.1828 Ccnb1ip1 RAID02977343 rno-miR-873-5p miRNA MIMAT0005339 Ccnb1ip1 mRNA 498492 Prediction 0.1828 Ccnb1ip1 RAID03004312 rno-miR-361-5p miRNA MIMAT0003117 Ccnb1ip1 mRNA 498492 Prediction 0.1828 Ccnb1ip1 RAID03090217 rno-miR-203a-3p miRNA MIMAT0000876 Ccnb1ip1 mRNA 498492 Prediction 0.1828 Ccnb1ip1 RAID03180401 rno-miR-7a-1-3p miRNA MIMAT0000607 Ccnb1ip1 mRNA 498492 Prediction 0.1828 Ccnb1ip1 RAID03265962 rno-miR-551b-5p miRNA MIMAT0017335 Ccnb1ip1 mRNA 498492 Prediction 0.1828 Ccnb1ip1 RAID03408116 rno-miR-384-5p miRNA MIMAT0005309 Ccnb1ip1 mRNA 498492 Prediction 0.1828 Ccnb1ip1 RAID03504920 rno-miR-365-3p miRNA MIMAT0001549 Ccnb1ip1 mRNA 498492 Prediction 0.1828 Ccnb1ip1 RAID03550788 rno-miR-340-5p miRNA MIMAT0004650 Ccnb1ip1 mRNA 498492 Prediction 0.1828 Ccnb1ip1 RAID03639845 rno-miR-363-3p miRNA MIMAT0003210 Ccnb1ip1 mRNA 498492 Prediction 0.1828 Ccnb1ip1 RAID03649258 rno-miR-193a-3p miRNA MIMAT0000868 Ccnb1ip1 mRNA 498492 Prediction 0.1828 Ccnb1ip1 RAID03978304 rno-miR-181c-5p miRNA MIMAT0000857 Ccnb1ip1 mRNA 498492 Prediction 0.1828 Ccnb1ip1 RAID03984641 rno-miR-30c-5p miRNA MIMAT0000804 Ccnb1ip1 mRNA 498492 Prediction 0.1828