DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004654 rno-miR-344-5p 298577 Ubxd3 ggACCUUAGAUCGGUCCUCGGACu |||| | | : |||||||| agUGGACUGACGGUUGGAGCCUGg 2 23 674 697 [rn4:5:157530664-157530687:-] 0.5236 158 7 -24.33 -0.2464 MIMAT0000604 rno-miR-350 298577 Ubxd3 cacuuucACAUACC---CG---AAACACUu ||| ||| || ||||||| agggccuUGUCUGGAUAGCAUGUUUGUGAa 2 18 119 148 [rn4:5:157531213-157531242:-] 0.5343 143 7 -14.83 -0.3436 MIMAT0004706 rno-let-7e* 298577 Ubxd3 ccUUUCGAUCCUCCGGCAUAUc |:|||| || ||||||| cuAGAGCU---AGCCCGUAUAa 2 21 616 634 [rn4:5:157530727-157530745:-] 0.5236 156 7 -18.55 -0.4630 MIMAT0004739 rno-miR-204* 298577 Ubxd3 uugcagggaaacGGAAGGGUCg :|||||||| accagauuaaacUCUUCCCAGa 2 11 366 387 [rn4:5:157530974-157530995:-] 0.5656 146 7 -18.20 -0.7338 MIMAT0000900 rno-miR-298 298577 Ubxd3 ccCUUCUUGUCGGGAGGAGACGg |::| | | |: |||||||| aaGGGGUAGAACUGUCCUCUGCu 2 22 558 580 [rn4:5:157530781-157530803:-] 0.5236 161 7 -28.09 -0.1830 MIMAT0003175 rno-miR-543* 298577 Ubxd3 ucuuCACGUGGCGCUUACAAa | ||| | ||||||| cuuuGAGCAAAGAGAAUGUUg 2 18 30 50 [rn4:5:157531311-157531331:-] 0.5204 153 7 -11.98 -0.4346 MIMAT0003197 rno-miR-376a* 298577 Ubxd3 gaguaucuuccUCUUAGAUGg ||||||||| uggcuccuuccAGAAUCUACu 2 11 287 307 [rn4:5:157531054-157531074:-] 0.5656 150 7 -14.24 -0.4000 MIMAT0003205 rno-miR-409-3p 298577 Ubxd3 ccccaAGUGGCUCGU-UGUAa || || |||| |||| gaaaaUCCCCCAGCACACAUc 2 16 584 604 [rn4:5:157530757-157530777:-] 0.5236 123 0 -10.22 -0.2322 MIMAT0005278 rno-miR-466b 298577 Ubxd3 guaCCUGUAUGUG--UGUGUGUAu | | || | | :||||||| gucGAAAAUCCCCCAGCACACAUc 2 20 581 604 [rn4:5:157530757-157530780:-] 0.5236 146 7 -10.01 -0.1514 MIMAT0005281 rno-miR-871 298577 Ubxd3 acACUGGC-CGUGGUU--AGACUUAu || | | ||| ::| ||||||| acUGCCAGUGCAGUGAAUUCUGAAUc 2 22 305 330 [rn4:5:157531031-157531056:-] 0.5656 151 7 -13.81 -0.5226 MIMAT0005287 rno-miR-879 298577 Ubxd3 ccgAAUC--UCGAUAUUCGGAGa ||:| ||| ||||||| augUUGGACAGCCUGAAGCCUCc 2 19 45 67 [rn4:5:157531294-157531316:-] 0.5343 149 7 -15.65 -0.1785 MIMAT0005319 rno-miR-484 298577 Ubxd3 uagcccuccCCUGACUCGGACu || : ||||||| uggacugacGGUUGGAGCCUGg 2 14 676 697 [rn4:5:157530664-157530685:-] 0.5236 145 7 -20.19 -0.2377 MIMAT0005338 rno-miR-770 298577 Ubxd3 gcACCGGG--UCUGUGCACC-ACGa || ||| ||||| |||| ||| ucUGUCCCUAAGACA-GUGGCUGCa 2 21 239 262 [rn4:5:157531099-157531122:-] 0.5656 129 0 -21.25 -0.1851 MIMAT0012822 rno-miR-202 298577 Ubxd3 uuUCUUCAUAUACGUA-UCCUu || || | || ||| |||| ccAGCAG-AGAUCCAUGAGGAu 2 20 514 534 [rn4:5:157530827-157530847:-] 0.5208 121 0 -7.59 -0.1336 MIMAT0012831 rno-miR-544 298577 Ubxd3 cucGAACGAUUUUUACGUCUUa | || | ||:||||||| acuCCUG-UCUAAGUGCAGAAu 2 20 700 720 [rn4:5:157530641-157530661:-] 0.5236 153 7 -16.82 -0.3487 MIMAT0000552 rno-miR-301a 298577 Ubxd3 cgaAACUGUUAUGAUAACGUGAc |||::| | | ||||||| gcaUUGGUAUU--UCUUGCACUa 2 21 436 456 [rn4:5:157530905-157530925:-] 0.5418 153 7 -13.33 -0.6463 MIMAT0000560 rno-miR-326 298577 Ubxd3 ugaccuccuucccGGGUCUCc ||||||| agauuaaacucuuCCCAGAGa 2 9 369 389 [rn4:5:157530972-157530992:-] 0.5656 140 7 -13.41 -0.9944 MIMAT0004641 rno-miR-330 298577 Ubxd3 cgGAUUCUGUGUCCGGGUCUCu :||| || | ||||||| gaUUAA-ACUC-UUCCCAGAGa 2 21 370 389 [rn4:5:157530972-157530991:-] 0.5656 144 7 -19.06 -0.9855 MIMAT0000836 rno-miR-130a 298577 Ubxd3 uaCGGGAAAAU-UGUAACGUGAc || :| || : ||||||| ugGCAUUGGUAUUUCUUGCACUa 2 21 434 456 [rn4:5:157530905-157530927:-] 0.5418 143 7 -11.05 -0.6389 MIMAT0000837 rno-miR-130b 298577 Ubxd3 uaCGGGAAAGU-AGUAACGUGAc || :| :| |: ||||||| ugGCAUUGGUAUUUCUUGCACUa 2 21 434 456 [rn4:5:157530905-157530927:-] 0.5418 147 7 -13.67 -0.6463 MIMAT0000844 rno-miR-138 298577 Ubxd3 gccggacuaagUGUUGUGGUCGa :| |||||||| cucccucccgaGCUACACCAGCa 2 13 497 519 [rn4:5:157530842-157530864:-] 0.5180 148 7 -18.27 -0.6564 MIMAT0000862 rno-miR-185 298577 Ubxd3 aguccuugacgGAAAGAGAGGu | |||||||| uguagcccccaCAUUCUCUCCu 2 12 196 217 [rn4:5:157531144-157531165:-] 0.5343 147 7 -14.90 -0.5062 MIMAT0000871 rno-miR-196a 298577 Ubxd3 ggGUUGUU-GUACUUUGAU-GGAu | |||: |||| :|||| ||| cuCUACAGCCAUG-GACUAGCCUg 2 21 640 662 [rn4:5:157530699-157530721:-] 0.5236 125 0 -19.70 -0.1599 MIMAT0000877 rno-miR-204 298577 Ubxd3 uccguauccuACUGUUUCCCUu || ||||||| gcagaauccuUGCAAAAGGGAa 2 13 714 735 [rn4:5:157530626-157530647:-] 0.5236 144 7 -13.32 -0.8829 MIMAT0000882 rno-miR-211 298577 Ubxd3 ucCGU-UUCCUACUG-UUUCCCUu ||| || | :| ||||||| guGCAGAAUCCUUGCAAAAGGGAa 2 21 712 735 [rn4:5:157530626-157530649:-] 0.5236 146 7 -15.40 -0.8795 MIMAT0000887 rno-miR-217 298577 Ubxd3 uaggucagucaaggacUACGUCAu ||||||| aaaagggaaguaaaauAUGCAGUa 2 9 727 750 [rn4:5:157530611-157530634:-] 0.5236 140 7 -14.20 -1.1374 MIMAT0001082 rno-miR-196b 298577 Ubxd3 ggGUUGUUGUCCUUUGAU-GGAu | |||:| ::|||| ||| cuCUACAGCCAUGGACUAGCCUg 2 21 640 662 [rn4:5:157530699-157530721:-] 0.5236 120 0 -16.91 -0.1599 MIMAT0001534 rno-miR-448 298577 Ubxd3 uaCCCUGUAGGAUGUAUACGUu |||| :| | ||||||| aaGGGAAGU--AAAAUAUGCAg 2 21 729 748 [rn4:5:157530613-157530632:-] 0.5236 149 7 -16.18 -0.7216 MIMAT0003114 rno-miR-383 298577 Ubxd3 ucgGUGUCAGUGGAAGAC-UAGa ::|||| | ||||| ||| cagUGCAGUGA-AUUCUGAAUCu 2 20 310 331 [rn4:5:157531030-157531051:-] 0.5656 121 0 -15.80 -0.5349 MIMAT0005303 rno-miR-196c 298577 Ubxd3 ggGUUGUU-GUGCUUUGAU-GGAu | |||: ||:| :|||| ||| cuCUACAGCCAUG-GACUAGCCUg 2 21 640 662 [rn4:5:157530699-157530721:-] 0.5236 121 0 -19.71 -0.1599 MIMAT0005304 rno-miR-301b 298577 Ubxd3 cgaAACUGUUAUGGUAACGUGAc |||::| | | ||||||| gcaUUGGUAUUUC--UUGCACUa 2 21 436 456 [rn4:5:157530905-157530925:-] 0.5418 153 7 -15.06 -0.6177

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G116369 Ubxn10 Rattus norvegicus 298577

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Ubxn10 RAID00138791 rno-miR-383-5p miRNA MIMAT0003114 Ubxn10 mRNA 298577 Prediction 0.1828 Ubxn10 RAID00685667 rno-miR-330-5p miRNA MIMAT0004641 Ubxn10 mRNA 298577 Prediction 0.2202 Ubxn10 RAID00787147 rno-miR-130a-3p miRNA MIMAT0000836 Ubxn10 mRNA 298577 Prediction 0.1828 Ubxn10 RAID00879453 rno-miR-217-5p miRNA MIMAT0000887 Ubxn10 mRNA 298577 Prediction 0.2202 Ubxn10 RAID01364242 rno-miR-138-5p miRNA MIMAT0000844 Ubxn10 mRNA 298577 Prediction 0.2202 Ubxn10 RAID01497250 rno-miR-196b-5p miRNA MIMAT0001082 Ubxn10 mRNA 298577 Prediction 0.1828 Ubxn10 RAID01558743 rno-miR-17-2-3p miRNA MIMAT0017295 Ubxn10 mRNA 298577 Prediction 0.1828 Ubxn10 RAID02008202 rno-miR-301b-3p miRNA MIMAT0005304 Ubxn10 mRNA 298577 Prediction 0.1828 Ubxn10 RAID02402030 rno-miR-448-3p miRNA MIMAT0001534 Ubxn10 mRNA 298577 Prediction 0.1828 Ubxn10 RAID02468312 rno-miR-204-5p miRNA MIMAT0000877 Ubxn10 mRNA 298577 Prediction 0.1828 Ubxn10 RAID02548258 rno-miR-211-5p miRNA MIMAT0000882 Ubxn10 mRNA 298577 Prediction 0.1828 Ubxn10 RAID02600014 rno-miR-196c-5p miRNA MIMAT0005303 Ubxn10 mRNA 298577 Prediction 0.1828 Ubxn10 RAID02743424 rno-miR-196a-5p miRNA MIMAT0000871 Ubxn10 mRNA 298577 Prediction 0.1828 Ubxn10 RAID02747044 rno-miR-191a-3p miRNA MIMAT0017146 Ubxn10 mRNA 298577 Prediction 0.1828 Ubxn10 RAID03376156 rno-miR-196b-3p miRNA MIMAT0017171 Ubxn10 mRNA 298577 Prediction 0.1828 Ubxn10 RAID03558247 rno-miR-301a-3p miRNA MIMAT0000552 Ubxn10 mRNA 298577 Prediction 0.1828 Ubxn10 RAID03685733 rno-miR-185-5p miRNA MIMAT0000862 Ubxn10 mRNA 298577 Prediction 0.2202 Ubxn10 RAID03740667 rno-miR-3575 miRNA MIMAT0017861 Ubxn10 mRNA 298577 Prediction 0.1828 Ubxn10 RAID03803322 rno-miR-130b-3p miRNA MIMAT0000837 Ubxn10 mRNA 298577 Prediction 0.1828 Ubxn10 RAID03807152 rno-miR-455-3p miRNA MIMAT0017308 Ubxn10 mRNA 298577 Prediction 0.1828 Ubxn10 RAID03809944 rno-miR-376a-5p miRNA MIMAT0003197 Ubxn10 mRNA 298577 Prediction 0.1828 Ubxn10 RAID03885257 rno-miR-204-3p miRNA MIMAT0004739 Ubxn10 mRNA 298577 Prediction 0.1828 Ubxn10 RAID04046996 rno-miR-326-3p miRNA MIMAT0000560 Ubxn10 mRNA 298577 Prediction 0.2202