DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000336 dme-miR-276* 31873 CG17754 gcauccuugagauaUGGAGCGAc :||||||| cucaccuucgccucGCCUCGCUc 2 10 518 540 [dm3:X:9148906-9148928:+] 0.5360 141 7 -15.25 -0.1117 MIMAT0005465 dme-miR-954 31873 CG17754 ugugUGUUGCGU-UGUGGGUCu ::| ||| |||||||| ugugGUAUGGCAUACACCCAGa 2 18 566 587 [dm3:X:9148954-9148975:+] 0.5360 152 7 -20.30 -1.0121 MIMAT0005465 dme-miR-954 31873 CG17754 uguguguUGCGUUGUGGGUCu |: :|:||||||| gauuugcAUUUAGCACCCAGc 2 15 86 106 [dm3:X:9148474-9148494:+] 0.5334 150 7 -18.34 -0.4330 MIMAT0005491 dme-miR-975 31873 CG17754 uauguCCUA-CAUCCU--UC-ACAAAu |||| | |||: || ||||| auuucGGAUAGAAGGGCCAGAUGUUUg 2 19 54 80 [dm3:X:9148442-9148468:+] 0.5334 120 0 -15.10 -0.3117 MIMAT0005502 dme-miR-985 31873 CG17754 acgggcUGGUAACCUUGUAAAc ||:|| ||||||| aagcaaACUAU--AAACAUUUa 2 17 27 46 [dm3:X:9149780-9149799:+] 0.4821 145 7 -9.12 -1.2246 MIMAT0005502 dme-miR-985 31873 CG17754 acGGGCUGGUAACC-UUG-UAAAc || ||: |||| ||| |||| ggCCAGAUGUUUGGAAACGAUUUg 2 21 68 91 [dm3:X:9148456-9148479:+] 0.5334 127 0 -18.61 -0.5151 MIMAT0005509 dme-miR-991 31873 CG17754 ugaaagGUUUGAUG-UUG-AAAUu |||||||: ||| |||| acaaagCAAACUAUAAACAUUUAa 2 17 24 47 [dm3:X:9149777-9149800:+] 0.4821 131 0 -14.24 -1.0247 MIMAT0005509 dme-miR-991 31873 CG17754 ugAAAGGUUUGAU--GUUGAAAUu | | | |:|| ||||||| cuUGUAGAUAUUAAGGAACUUUAg 2 21 333 356 [dm3:X:9148721-9148744:+] 0.5211 143 7 -8.07 -0.3396 MIMAT0011787 dme-miR-2280* 31873 CG17754 agUCAAUCGAACCUUCAUUUAa | ||| || ||||||| gcAUUUA--AUGUUAGUAAAUu 2 21 166 185 [dm3:X:9148554-9148573:+] 0.5055 145 7 -8.29 -0.9958 MIMAT0011787 dme-miR-2280* 31873 CG17754 agucaaucgaaccUUCAUUUAa |||||||| ugaaucuaaaaauAAGUAAAUc 2 10 655 676 [dm3:X:9149043-9149064:+] 0.5214 145 7 -5.21 -1.2088 MIMAT0011791 dme-miR-2283 31873 CG17754 uaacaGCAUAAG--UACUAUAAAAg ||| | | | |||||||| uuccaCGUUUACAAAAGAUAUUUUc 2 19 272 296 [dm3:X:9148660-9148684:+] 0.5055 153 7 -13.22 -0.5225 MIMAT0012199 dme-miR-2492 31873 CG17754 aaacuuucgagagCUGUUUUGUa |||||:||| ---augcuagacaGACAAGACAa 2 11 1 20 [dm3:X:9149754-9149773:+] 0.7011 134 0 -13.63 -0.2021 MIMAT0012199 dme-miR-2492 31873 CG17754 aaacuuucgagagcUGUUUUGUa |||||:|| agacaagacaacaaACAAAGCAa 2 10 10 32 [dm3:X:9149763-9149785:+] 0.5916 129 0 -9.72 -0.1017 MIMAT0012199 dme-miR-2492 31873 CG17754 aaaCUUUCGAGAGCUGUUUUGUa |||| ||:| ||||| | caaGAAA--ACUUGUCAAAAAAa 2 21 69 89 [dm3:X:9149822-9149842:+] 0.4735 125 0 -9.07 -0.1699 MIMAT0012199 dme-miR-2492 31873 CG17754 aaacuuucgagagcugUUUUGUa |||||| uugucaaaaaaaaaaaAAAACAa 2 8 78 100 [dm3:X:9149831-9149853:+] 0.4735 120 6 -2.77 -0.7361 MIMAT0012201 dme-miR-2493 31873 CG17754 ugcggagcgugUUUAUGUGUGCc ||| ||||| | aagcuaaaagaAAAAACACAAGa 2 13 51 73 [dm3:X:9149804-9149826:+] 0.4778 120 0 -8.52 -0.1070 MIMAT0012202 dme-miR-2494* 31873 CG17754 aaGGGUUAGACCACGUGAAUg |: || | |||||||| guCUGAAAGCGAUGCACUUAg 2 20 393 413 [dm3:X:9148781-9148801:+] 0.5420 151 7 -12.85 -0.4091 MIMAT0012208 dme-miR-2497* 31873 CG17754 uugUUGAUGUAA--AACGUUA-CGAAUg ::|| |:|| |||| || ||||| guaGGCU-CGUUAAUUGC-AUCGCUUAu 2 23 30 55 [dm3:X:9148418-9148443:+] 0.5150 121 0 -16.15 -0.6147 MIMAT0012211 dme-miR-2498 31873 CG17754 uucauucugcccuuacGGUCAAa |||||| uauuuucccaaauuuaCCAGUUc 2 8 290 312 [dm3:X:9148678-9148700:+] 0.5055 120 6 -8.35 -0.1375 MIMAT0012215 dme-miR-2500 31873 CG17754 gacuccaggugugugUUUUAGg |||||| cuugcauuaaucuuaAAAAUCc 2 8 245 266 [dm3:X:9148633-9148654:+] 0.5055 120 6 -8.40 -0.1452 MIMAT0012216 dme-miR-2501 31873 CG17754 aaUCGGGUCCG-UGAG-GUUUGA-AUg ||:: | || :| | |||||| || gcAGUUAAUGCUGCACACAAACUGUAg 2 23 205 231 [dm3:X:9148593-9148619:+] 0.5055 120 0 -15.12 -0.5904 MIMAT0000105 dme-miR-1 31873 CG17754 gaGGUAUGAAGAAAUGUAAGGu ::| | || ||||||| ucUUAAAAAUCCAAACAUUCCa 2 21 255 276 [dm3:X:9148643-9148664:+] 0.5055 144 7 -12.74 -1.1946 MIMAT0000109 dme-miR-4 31873 CG17754 aguuACCAACAGAUCGAAAUa ||| || ||||||| uauuUGG--GUAGAGCUUUAu 2 18 142 160 [dm3:X:9148530-9148548:+] 0.5055 146 7 -12.28 -0.7012 MIMAT0000113 dme-miR-8 31873 CG17754 cuGUAGAAAUGGACUGUCAUAAu || | ||| ||||||| caCACCCCAACC---CAGUAUUu 2 22 609 628 [dm3:X:9148997-9149016:+] 0.5360 141 7 -9.89 -0.2569 MIMAT0000114 dme-miR-9a 31873 CG17754 agUAUGUC-GAUC---UAUUGGUUUCu | |||| | || | || ||||| cuAGACAGACAAGACAACAAACAAAGc 2 22 4 30 [dm3:X:9149757-9149783:+] 0.5916 123 0 -12.26 -0.2176 MIMAT0000116 dme-miR-11 31873 CG17754 cguuCUUGAGUCUGACA-CUAc | || || ||||| ||| ugcuGCACACAAACUGUAGAUu 2 18 213 234 [dm3:X:9148601-9148622:+] 0.5055 125 0 -9.87 -0.7284 MIMAT0000338 dme-miR-277 31873 CG17754 acagcauGGUCUAUCACGUAAAu ::| | | ||||||| uagagcuUUAUAAAUUGCAUUUa 2 17 150 172 [dm3:X:9148538-9148560:+] 0.5055 148 7 -8.79 -1.2730 MIMAT0000338 dme-miR-277 31873 CG17754 acAGCAUGGUCUAUCACGUAAAu |:| | ||| ||||||| guUUGGAAACGAU-UUGCAUUUa 2 22 76 97 [dm3:X:9148464-9148485:+] 0.5334 147 7 -11.14 -0.7437 MIMAT0000338 dme-miR-277 31873 CG17754 acAGCAUGGUCUAUCACGUAAau |: |||| | |||||| uuUUAUACC-UUUCUUGCAUUaa 3 22 233 254 [dm3:X:9148621-9148642:+] 0.5055 127 0 -8.56 -0.1150 MIMAT0000346 dme-miR-282 31873 CG17754 ugucuguuucggaucaucUCCGAUCUaa | |||||| ------------------AUGCUAGAca 3 11 1 10 [dm3:X:9149754-9149763:+] 0.7011 122 0 -10.88 -0.1871 MIMAT0000347 dme-miR-283 31873 CG17754 ucuuAAUGGUCGACUAUAAAu ||| || ||||||| acguUUA-CAAAAGAUAUUUu 2 18 276 295 [dm3:X:9148664-9148683:+] 0.5055 147 7 -6.26 -0.9390 MIMAT0000352 dme-miR-79 31873 CG17754 uacgAAACCAUUAGAUCGAAAu ||||| :| |||||| auuaUUUGG--GUAGAGCUUUa 2 19 140 159 [dm3:X:9148528-9148547:+] 0.5055 123 6 -13.30 -0.1536 MIMAT0000355 dme-miR-210 31873 CG17754 aucGGCGACA-GUGU-GCGUGUu || || | |:|| |||||| cacCCACUUUCCGCACCGCACAc 2 19 591 613 [dm3:X:9148979-9149001:+] 0.5360 125 6 -17.28 -0.2562 MIMAT0000389 dme-miR-31b 31873 CG17754 gucGAUAAGGCUGUAGAACGgu :||| || : |||||| auuUUAUACC--UUUCUUGCau 3 20 232 251 [dm3:X:9148620-9148639:+] 0.5055 128 0 -10.82 -0.1014 MIMAT0000390 dme-miR-304 31873 CG17754 gaguguaaaUGUUUAAC-UCUAAu ||||| || ||||| augcugcacACAAACUGUAGAUUu 2 15 212 235 [dm3:X:9148600-9148623:+] 0.5055 126 0 -12.14 -0.9662 MIMAT0000395 dme-miR-9b 31873 CG17754 guaUGUC-GAUUU-UAG-UGGUUUCu |||| | |:| | | | ||||| uagACAGACAAGACAACAAACAAAGc 2 21 5 30 [dm3:X:9149758-9149783:+] 0.5916 121 0 -11.95 -0.2176 MIMAT0000400 dme-miR-31a 31873 CG17754 agucGAUACGGCUGUAGAACGgu :||| || : |||||| gauuUUAUACC--UUUCUUGCau 3 20 231 251 [dm3:X:9148619-9148639:+] 0.5055 128 0 -10.82 -0.1014 MIMAT0000407 dme-miR-315 31873 CG17754 cgAAAGACU-CGUUGUUAGUUUu ||| || ||||:||||||| acUUUAGGAGGCAAUAAUCAAAa 2 21 350 372 [dm3:X:9148738-9148760:+] 0.5315 171 7 -23.37 -1.1473 MIMAT0000407 dme-miR-315 31873 CG17754 cgaaagACUCGUUGUUAGUUUu | ||:| ||||||| uaaaaaUAAGUA--AAUCAAAa 2 17 661 680 [dm3:X:9149049-9149068:+] 0.5214 145 7 -7.69 -1.3241 MIMAT0000408 dme-miR-316 31873 CG17754 gcggucAUUCG---CCUUUUUCUgu ||||| | |||||| aacauuUAAGCCAAGCUAAAAGAaa 3 17 39 63 [dm3:X:9149792-9149816:+] 0.4778 127 0 -11.51 -0.1201 MIMAT0000408 dme-miR-316 31873 CG17754 gcggucauucgccuUUUUCUGu ||||||: cauuccacguuuacAAAAGAUa 2 9 270 291 [dm3:X:9148658-9148679:+] 0.5055 124 0 -10.42 -0.1025 MIMAT0000409 dme-miR-317 31873 CG17754 ugaccuaUGGUGGUCGACACAAGu :|: :|: |||||||| ucgccucGCUCUCGUCUGUGUUCu 2 18 530 553 [dm3:X:9148918-9148941:+] 0.5360 153 7 -19.13 -0.1715 MIMAT0005470 dme-miR-957 31873 CG17754 cgGAGUCAA-AACCUGC-CAAAGu | ::||| ||| || ||||| cuCGUGGUUGUUGCUCGUGUUUCc 2 21 469 492 [dm3:X:9148857-9148880:+] 0.5514 123 0 -13.18 -0.3081 MIMAT0005471 dme-miR-958 31873 CG17754 uuucaucuuaucuuCUUAGAgu |||||| gcucuuuucggcuuGAAUCUaa 3 9 642 663 [dm3:X:9149030-9149051:+] 0.5214 120 0 -5.13 -0.2043 MIMAT0005492 dme-miR-976 31873 CG17754 cgUAACUACUAUUGAUUAGGUu ||| || ||| |||||| gcAUUAAUCUUAA-AAAUCCAa 2 21 248 268 [dm3:X:9148636-9148656:+] 0.5055 130 6 -12.63 -0.1866 MIMAT0005492 dme-miR-976 31873 CG17754 cguaacuacuauugaUUAGGUu |||||| ------uccaaacccAAUCCAc 2 8 1 16 [dm3:X:9148389-9148404:+] 0.5909 120 6 -6.36 -0.2778 MIMAT0005507 dme-miR-137 31873 CG17754 gaugcacauaagagUUCGUUau |||||| caagacaacaaacaAAGCAAac 3 9 13 34 [dm3:X:9149766-9149787:+] 0.5916 120 0 -4.56 -0.3999 MIMAT0005520 dme-miR-1000 31873 CG17754 ugACGACACUGUCCUGUUAUa |||| |||| ||||| | -aUGCU-AGACA-GACAAGAc 2 20 1 18 [dm3:X:9149754-9149771:+] 0.7011 127 0 -13.65 -0.2298 MIMAT0005030 dme-miR-1017 31873 CG17754 ccUACUCAAACCCAUCUCGAAAg || | ||||||||||||||| ccAUUA-UUUGGGUAGAGCUUUa 2 22 138 159 [dm3:X:9148526-9148547:+] 0.5055 183 7 -25.29 -1.1691

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score CG17754 RAID00210011 dme-miR-8-3p miRNA MIMAT0000113 CG17754 mRNA 31873 Prediction 0.2202 CG17754 RAID00221282 dme-miR-1-3p miRNA MIMAT0000105 CG17754 mRNA 31873 Prediction 0.2202 CG17754 RAID00666017 dme-miR-991-3p miRNA MIMAT0005509 CG17754 mRNA 31873 Prediction 0.1828 CG17754 RAID00687518 dme-miR-998-3p miRNA MIMAT0005518 CG17754 mRNA 31873 Prediction 0.1828 CG17754 RAID00756952 dme-miR-9b-5p miRNA MIMAT0000395 CG17754 mRNA 31873 Prediction 0.1828 CG17754 RAID00882244 dme-miR-210-3p miRNA MIMAT0000355 CG17754 mRNA 31873 Prediction 0.1828 CG17754 RAID00942475 dme-miR-304-5p miRNA MIMAT0000390 CG17754 mRNA 31873 Prediction 0.1828 CG17754 RAID00958469 dme-miR-2c-3p miRNA MIMAT0000411 CG17754 mRNA 31873 Prediction 0.1828 CG17754 RAID01327286 dme-miR-137-3p miRNA MIMAT0005507 CG17754 mRNA 31873 Prediction 0.1828 CG17754 RAID01415031 dme-miR-285-3p miRNA MIMAT0000356 CG17754 mRNA 31873 Prediction 0.1828 CG17754 RAID01543705 dme-miR-976-3p miRNA MIMAT0005492 CG17754 mRNA 31873 Prediction 0.2202 CG17754 RAID01614347 dme-miR-4-3p miRNA MIMAT0000109 CG17754 mRNA 31873 Prediction 0.2202 CG17754 RAID01863536 dme-miR-1008-3p miRNA MIMAT0005021 CG17754 mRNA 31873 Prediction 0.1828 CG17754 RAID01893113 dme-miR-282-5p miRNA MIMAT0000346 CG17754 mRNA 31873 Prediction 0.1828 CG17754 RAID02071088 dme-miR-11-3p miRNA MIMAT0000116 CG17754 mRNA 31873 Prediction 0.1828 CG17754 RAID02088702 dme-miR-315-5p miRNA MIMAT0000407 CG17754 mRNA 31873 Prediction 0.2202 CG17754 RAID02327888 dme-miR-283-5p miRNA MIMAT0000347 CG17754 mRNA 31873 Prediction 0.2202 CG17754 RAID02530698 dme-bantam-3p miRNA MIMAT0000365 CG17754 mRNA 31873 Prediction 0.1828 CG17754 RAID02545662 dme-miR-316-5p miRNA MIMAT0000408 CG17754 mRNA 31873 Prediction 0.1828 CG17754 RAID02627006 dme-miR-957-3p miRNA MIMAT0005470 CG17754 mRNA 31873 Prediction 0.1828 CG17754 RAID02736947 dme-miR-31b-5p miRNA MIMAT0000389 CG17754 mRNA 31873 Prediction 0.1828 CG17754 RAID02937575 dme-miR-9a-5p miRNA MIMAT0000114 CG17754 mRNA 31873 Prediction 0.1828 CG17754 RAID03059560 dme-miR-958-3p miRNA MIMAT0005471 CG17754 mRNA 31873 Prediction 0.1828 CG17754 RAID03060898 dme-miR-1017-3p miRNA MIMAT0005030 CG17754 mRNA 31873 Prediction 0.2202 CG17754 RAID03100346 dme-mir-2a-2 miRNA MI0000118 CG17754 mRNA 31873 Prediction 0.1828 CG17754 RAID03235997 dme-miR-997-5p miRNA MIMAT0005517 CG17754 mRNA 31873 Prediction 0.1828 CG17754 RAID03316831 dme-miR-954-5p miRNA MIMAT0005465 CG17754 mRNA 31873 Prediction 0.1828 CG17754 RAID03354806 dme-miR-31a-5p miRNA MIMAT0000400 CG17754 mRNA 31873 Prediction 0.1828 CG17754 RAID03358186 dme-miR-995-3p miRNA MIMAT0005514 CG17754 mRNA 31873 Prediction 0.1828 CG17754 RAID03425121 dme-miR-277-3p miRNA MIMAT0000338 CG17754 mRNA 31873 Prediction 0.2202 CG17754 RAID03571487 dme-miR-79-3p miRNA MIMAT0000352 CG17754 mRNA 31873 Prediction 0.2202 CG17754 RAID03652522 dme-miR-1000-5p miRNA MIMAT0005520 CG17754 mRNA 31873 Prediction 0.1828 CG17754 RAID04060057 dme-miR-317-3p miRNA MIMAT0000409 CG17754 mRNA 31873 Prediction 0.2202