DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0005464 dme-miR-iab-4as-3p 34311 CG5899 auUUGCAUAUGACUUACAUAGg ||: | |::| ||||||| guAAUUUCUGUU-UAUGUAUCg 2 21 944 964 [dm3:2L:9908873-9908893:-] 0.4510 150 7 -11.05 -0.8953 MIMAT0005464 dme-miR-iab-4as-3p 34311 CG5899 auUUGCAUAUGACUUACAUAGg ||: | |::| ||||||| guAAUUUCUGUU-UAUGUAUCg 2 21 346 366 [dm3:2L:9908873-9908893:-] 0.4510 150 7 -11.05 -1.0082 MIMAT0005475 dme-miR-961 34311 CG5899 uagagucaaugaccACUAGUUu ||||||| ucugcgcgagcauuUGAUCAAc 2 9 648 669 [dm3:2L:9909168-9909189:-] 0.4510 140 7 -7.41 -0.2469 MIMAT0005475 dme-miR-961 34311 CG5899 uagagucaaugaccACUAGUUu ||||||| ucugcgcgagcauuUGAUCAAc 2 9 50 71 [dm3:2L:9909168-9909189:-] 0.4510 140 7 -7.41 -0.3278 MIMAT0005494 dme-miR-978 34311 CG5899 gacGUUAAAUG---CCGUGACCUGu ||:|| || | ::|||||| agcCAGUUCACCAUGAUGCUGGACa 2 20 86 110 [dm3:2L:9909727-9909751:-] 0.6829 138 6 -19.54 -0.1284 MIMAT0005502 dme-miR-985 34311 CG5899 acgggcugguaaCCUUGUAAAc | ||||||| ucauuaguaacaGCAACAUUUc 2 11 850 871 [dm3:2L:9908966-9908987:-] 0.4510 142 7 -4.72 -0.1482 MIMAT0005502 dme-miR-985 34311 CG5899 acgggcugguaaCCUUGUAAAc | ||||||| ucauuaguaacaGCAACAUUUc 2 11 252 273 [dm3:2L:9908966-9908987:-] 0.4510 142 7 -4.72 -0.2084 MIMAT0005510 dme-miR-992 34311 CG5899 gaaucauggucuuuGCACAUGa :|||||| gauaaagaucauuuUGUGUACg 2 9 986 1007 [dm3:2L:9908830-9908851:-] 0.4510 124 6 -12.92 -0.1596 MIMAT0005510 dme-miR-992 34311 CG5899 gaaucauggucuuuGCACAUGa :|||||| gauaaagaucauuuUGUGUACg 2 9 388 409 [dm3:2L:9908830-9908851:-] 0.4510 124 6 -12.92 -0.2237 MIMAT0005517 dme-miR-997 34311 CG5899 acuuugaggaagcUCAAACCc ||||||| cugcgaauacgaaAGUUUGGu 2 9 125 145 [dm3:2L:9909692-9909712:-] 0.6829 140 7 -10.07 -0.7773 MIMAT0011786 dme-miR-2280 34311 CG5899 uauaaaauaacggUUCGAUUcu ||||||| ggccgccgaagagAAGCUAAaa 3 10 424 445 [dm3:2L:9909392-9909413:-] 0.8578 125 0 -9.05 -0.1788 MIMAT0011788 dme-miR-2281* 34311 CG5899 aacGUAGACGUCGACGU-CUAUUa || | || :| || ||||| uaaCAGCAACAUUUCCACGAUAAa 2 21 857 880 [dm3:2L:9908957-9908980:-] 0.4510 120 0 -9.31 -0.4806 MIMAT0011788 dme-miR-2281* 34311 CG5899 aacGUAGACGUCGACGU-CUAUUa || | || :| || ||||| uaaCAGCAACAUUUCCACGAUAAa 2 21 259 282 [dm3:2L:9908957-9908980:-] 0.4510 120 0 -9.31 -0.6086 MIMAT0011790 dme-miR-2282 34311 CG5899 uaagauaaaAAUCGAGUGGCUa || | ||||||| ccgccaggaUUUGAUCACCGAc 2 14 181 202 [dm3:2L:9909635-9909656:-] 0.6829 149 7 -12.31 -0.6953 MIMAT0011791 dme-miR-2283 34311 CG5899 uaACAGCAUAAGUACUAUAAAAg | |:|||||::| ||||||| aaUAUUGUAUUUGU-AUAUUUUu 2 22 728 749 [dm3:2L:9909088-9909109:-] 0.4510 171 7 -10.94 -0.8883 MIMAT0011791 dme-miR-2283 34311 CG5899 uaACAGCAUAAGUACUAUAAAAg | |:|||||::| ||||||| aaUAUUGUAUUUGU-AUAUUUUu 2 22 130 151 [dm3:2L:9909088-9909109:-] 0.4510 171 7 -10.94 -1.0047 MIMAT0012211 dme-miR-2498 34311 CG5899 uucauucugcccuuaCGGUCAAa ||||||| guguguugcuuuucaGCCAGUUc 2 9 72 94 [dm3:2L:9909743-9909765:-] 0.6829 140 7 -11.07 -0.5549 MIMAT0000114 dme-miR-9a 34311 CG5899 aguaugucgaucuauUGGUUUCu ||||||| guguuccuacucuccACCAAAGc 2 9 227 249 [dm3:2L:9909588-9909610:-] 0.6829 140 7 -9.01 -0.1232 MIMAT0012531 dme-miR-10-3p 34311 CG5899 uuuGGAGAGAU-CUUGGCUUAAac :|| |:|| | |:|||||| auuUCUGUUUAUGUAUCGAAUUga 3 21 349 372 [dm3:2L:9908867-9908890:-] 0.4510 143 0 -14.93 -0.1380 MIMAT0000348 dme-miR-284 34311 CG5899 guuaACGACCUUAGUUCAACGACUGAAGu ||: | ||| | | : |||||| caccUGUGUCAUUCACGAUAUCGACUUCa 2 26 283 311 [dm3:2L:9909526-9909554:-] 0.6829 129 6 -16.01 -0.1045 MIMAT0000392 dme-miR-9c 34311 CG5899 agaugucgaucuuaUGGUUUCu ||||||| uguuccuacucuccACCAAAGc 2 9 228 249 [dm3:2L:9909588-9909609:-] 0.6829 140 7 -11.89 -0.1232 MIMAT0000395 dme-miR-9b 34311 CG5899 guAUGUCGAUUUUA-GUGGUUUCu |:: ||| | |||||||| ugUGUUCCUACUCUCCACCAAAGc 2 22 226 249 [dm3:2L:9909588-9909611:-] 0.6829 148 7 -13.14 -0.1207 MIMAT0000408 dme-miR-316 34311 CG5899 gcggucaUUCGCCUUUUUCUGu || : |||||:||| aagcuaaAACUAGAAAAGGACa 2 16 437 458 [dm3:2L:9909379-9909400:-] 0.8578 139 0 -15.44 -0.1033 MIMAT0000409 dme-miR-317 34311 CG5899 ugacCUAUGGUGGUCGACACAAGu |||| ||:| :||||||| ggacGAUAGCAUC-UUUGUGUUCc 2 21 211 233 [dm3:2L:9909604-9909626:-] 0.6829 162 7 -19.33 -0.7123 MIMAT0005466 dme-miR-955 34311 CG5899 cugUGAGUUUGGAGACGUGCUAc || ||| |:| |||||| guaACAGCAACAUUUCCACGAUa 2 21 258 280 [dm3:2L:9908959-9908981:-] 0.4510 132 6 -13.64 -0.1274 MIMAT0005469 dme-miR-956 34311 CG5899 uuACCUAAUCUCACCAGA-GCUUu |||| :|||| ||| |||| ugUGGA--GGAGU-AUCUGCGAAu 2 22 112 132 [dm3:2L:9909705-9909725:-] 0.6829 120 0 -17.01 -0.8856 MIMAT0005478 dme-miR-964 34311 CG5899 uuCAAUUCGAGGG-----GAUAAGAUu ||||| || : :||||||| cuGUUAACAUCGUUUGAAUUAUUCUAa 2 21 700 726 [dm3:2L:9909111-9909137:-] 0.4510 143 7 -11.56 -1.0994 MIMAT0005478 dme-miR-964 34311 CG5899 uuCAAUUCGAGGG-----GAUAAGAUu ||||| || : :||||||| cuGUUAACAUCGUUUGAAUUAUUCUAa 2 21 102 128 [dm3:2L:9909111-9909137:-] 0.4510 143 7 -11.56 -1.1763 MIMAT0005479 dme-miR-932 34311 CG5899 gacGUUACGUG-AUGCCUUAACu | :| :|: ||: |||||| uuuCUGUUUAUGUAUCGAAUUGa 2 20 948 970 [dm3:2L:9908867-9908889:-] 0.4510 122 6 -15.67 -0.1240 MIMAT0005479 dme-miR-932 34311 CG5899 gacGUUACGUG-AUGCCUUAACu | :| :|: ||: |||||| uuuCUGUUUAUGUAUCGAAUUGa 2 20 350 372 [dm3:2L:9908867-9908889:-] 0.4510 122 6 -15.67 -0.1759 MIMAT0005496 dme-miR-980 34311 CG5899 auucgggaaguguucCGUCGAu |||||| caaggaucaggaggaGCAGCUa 2 8 535 556 [dm3:2L:9909281-9909302:-] 0.7872 120 6 -17.14 -0.1660 MIMAT0005497 dme-miR-981 34311 CG5899 acguccaaaGCAGCUGUUGCUu ||| ||||||| acuucaaccCGU--ACAACGAu 2 14 306 325 [dm3:2L:9909512-9909531:-] 0.6829 142 7 -11.80 -0.7300 MIMAT0005501 dme-miR-927 34311 CG5899 ccAUU-UCGCAUCCU---UAAGAUUu ||| | ||| || ||||||| guUAACAUCGUUUGAAUUAUUCUAAc 2 21 702 727 [dm3:2L:9909110-9909135:-] 0.4510 150 7 -9.63 -0.9081 MIMAT0005501 dme-miR-927 34311 CG5899 ccAUU-UCGCAUCCU---UAAGAUUu ||| | ||| || ||||||| guUAACAUCGUUUGAAUUAUUCUAAc 2 21 104 129 [dm3:2L:9909110-9909135:-] 0.4510 150 7 -9.63 -1.0225 MIMAT0005019 dme-miR-1006 34311 CG5899 gauACUUAUUCUUUAGCUUAAau || || | |||||||| uucUGUUUAUG-UAUCGAAUUga 3 21 351 372 [dm3:2L:9908867-9908888:-] 0.4510 134 0 -12.49 -0.1380

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Etl1 RAID00142116 dme-miR-316-5p miRNA MIMAT0000408 Etl1 mRNA 34311 Prediction 0.1828 Etl1 RAID00277568 dme-miR-964-5p miRNA MIMAT0005478 Etl1 mRNA 34311 Prediction 0.2202 Etl1 RAID00504639 dme-miR-999-3p miRNA MIMAT0005519 Etl1 mRNA 34311 Prediction 0.1828 Etl1 RAID00706365 dme-miR-263b-5p miRNA MIMAT0000362 Etl1 mRNA 34311 Prediction 0.1828 Etl1 RAID00822424 dme-miR-9b-5p miRNA MIMAT0000395 Etl1 mRNA 34311 Prediction 0.1828 Etl1 RAID00935079 dme-miR-955-5p miRNA MIMAT0005466 Etl1 mRNA 34311 Prediction 0.2202 Etl1 RAID01279791 dme-miR-284-3p miRNA MIMAT0000348 Etl1 mRNA 34311 Prediction 0.1828 Etl1 RAID01326043 dme-miR-985-3p miRNA MIMAT0005502 Etl1 mRNA 34311 Prediction 0.1828 Etl1 RAID01712218 dme-miR-981-3p miRNA MIMAT0005497 Etl1 mRNA 34311 Prediction 0.1828 Etl1 RAID01854534 dme-miR-932-5p miRNA MIMAT0005479 Etl1 mRNA 34311 Prediction 0.2202 Etl1 RAID02228046 dme-miR-9c-5p miRNA MIMAT0000392 Etl1 mRNA 34311 Prediction 0.1828 Etl1 RAID02529141 dme-miR-10-3p miRNA MIMAT0012531 Etl1 mRNA 34311 Prediction 0.1828 Etl1 RAID02547371 dme-miR-980-3p miRNA MIMAT0005496 Etl1 mRNA 34311 Prediction 0.1828 Etl1 RAID02631500 dme-miR-956-3p miRNA MIMAT0005469 Etl1 mRNA 34311 Prediction 0.1828 Etl1 RAID02812339 dme-miR-961-5p miRNA MIMAT0005475 Etl1 mRNA 34311 Prediction 0.1828 Etl1 RAID02891367 dme-miR-927-5p miRNA MIMAT0005501 Etl1 mRNA 34311 Prediction 0.2202 Etl1 RAID02968491 dme-miR-317-3p miRNA MIMAT0000409 Etl1 mRNA 34311 Prediction 0.1828 Etl1 RAID02973700 dme-miR-9a-5p miRNA MIMAT0000114 Etl1 mRNA 34311 Prediction 0.1828 Etl1 RAID04050427 dme-miR-1006-3p miRNA MIMAT0005019 Etl1 mRNA 34311 Prediction 0.1828