DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0005464 dme-miR-iab-4as-3p 2768995 CG33291 auuugcauaugacuUACAUAGg ||||||: aucucugagcuuuuAUGUAUUa 2 9 87 108 [dm3:3L:21659207-21659228:+] 0.6106 124 0 -7.64 -0.2129 MIMAT0005499 dme-miR-983 2768995 CG33291 aguaaucaagcuuUGCAUAAUa |:|||||| ucucugagcuuuuAUGUAUUAu 2 10 88 109 [dm3:3L:21659208-21659229:+] 0.6106 129 6 -8.74 -0.1060 MIMAT0005026 dme-miR-1013 2768995 CG33291 gcucaAGCCGUAUGAAAAUa || :: :|||||| uuuaaUCUCUGAGCUUUUAu 2 16 83 102 [dm3:3L:21659203-21659222:+] 0.6106 127 6 -6.11 -0.1230 MIMAT0011787 dme-miR-2280* 2768995 CG33291 agucaaucgaaCCUUCAUUUaa ||||||||| cauuaaaugaaGGAAGUAAAau 3 12 263 284 [dm3:3L:21659383-21659404:+] 0.6106 135 0 -10.97 -0.1465 MIMAT0011791 dme-miR-2283 2768995 CG33291 uaaCAGCAUAAGUACUAUAAAAg ||:|||||: | :|||||| cuaGUUGUAUUU-UUGUAUUUUc 2 21 150 171 [dm3:3L:21659270-21659291:+] 0.6106 154 6 -17.25 -0.1788 MIMAT0000109 dme-miR-4 2768995 CG33291 aguuaccaACAGA-UCGAAAua | ||| |||||| uaauuuaaUCUCUGAGCUUUua 3 14 80 101 [dm3:3L:21659200-21659221:+] 0.6106 128 0 -6.89 -0.1508 MIMAT0000109 dme-miR-4 2768995 CG33291 aguuaCCAACAGAUCGA-AAUa ||| ||||||| ||| caggcGGUCCUCUAGCUAUUAu 2 17 220 241 [dm3:3L:21659340-21659361:+] 0.6106 128 0 -15.39 -0.7126 MIMAT0012531 dme-miR-10-3p 2768995 CG33291 uuuGGAGAGAU-C-UUGGCUUAAac :||||| | | ||:|||||| uucUCUCUCGACGAAAUCGAAUUcu 3 21 37 61 [dm3:3L:21659157-21659181:+] 0.6106 146 0 -18.31 -0.1906 MIMAT0000319 dme-miR-263a 2768995 CG33291 cacUUAAGAAGGUCACGGUAAUUg |||| ||:| | |||||| ugaAAUUGUUUC--U-GCAUUAAa 2 22 249 269 [dm3:3L:21659369-21659389:+] 0.6106 124 6 -9.02 -0.2534 MIMAT0000338 dme-miR-277 2768995 CG33291 acagcAUGGUCUAUCACGUAAau | ::| || |||||| cgaauUCUUAUUUAUUGCAUUgu 3 19 54 76 [dm3:3L:21659174-21659196:+] 0.6106 130 0 -5.48 -0.3890 MIMAT0000338 dme-miR-277 2768995 CG33291 acAGCAUGGUCUAUCACGUAAau |:| | : | | |||||| agUUGAAAUUGUUUCUGCAUUaa 3 22 246 268 [dm3:3L:21659366-21659388:+] 0.6106 129 0 -7.89 -0.2121 MIMAT0000352 dme-miR-79 2768995 CG33291 uacgaaaccauuagaUCGAAAu |||||| uuaauuuaaucucugAGCUUUu 2 8 79 100 [dm3:3L:21659199-21659220:+] 0.6106 120 6 -9.18 -0.1762 MIMAT0005471 dme-miR-958 2768995 CG33291 uuucaucuuaucuucUUAGAGu |||||| cauuguuuuuaauuuAAUCUCu 2 8 71 92 [dm3:3L:21659191-21659212:+] 0.6106 120 6 -5.12 -0.2051 MIMAT0005486 dme-miR-970 2768995 CG33291 uaucggcgcacacAGAAUAcu |||||| gacgaaaucgaauUCUUAUuu 3 9 46 66 [dm3:3L:21659166-21659186:+] 0.6106 120 0 -5.85 -0.1362 MIMAT0005504 dme-miR-987 2768995 CG33291 guAGUUAGGUCUGAUAAAUGAAAu |:| | || | |||| ||| auUUAUUGCAUUGUUUUUAAUUUa 2 23 63 86 [dm3:3L:21659183-21659206:+] 0.6106 126 0 -4.19 -0.1248 MIMAT0005512 dme-miR-993 2768995 CG33291 ucuauggacaucucuGCUCGAAg :|||||| uuuuaauuuaaucucUGAGCUUu 2 9 77 99 [dm3:3L:21659197-21659219:+] 0.6106 124 6 -9.62 -0.1600 MIMAT0005019 dme-miR-1006 2768995 CG33291 gauacuuaUUCUUUAGCUUAAau | ||||||||||| cucucucgACGAAAUCGAAUUcu 3 16 39 61 [dm3:3L:21659159-21659181:+] 0.6106 147 0 -12.23 -0.1889 MIMAT0005020 dme-miR-1007 2768995 CG33291 acguuugUCAAUUA---ACUCGAAu | ||||| ||||||| guuuuuaAUUUAAUCUCUGAGCUUu 2 16 75 99 [dm3:3L:21659195-21659219:+] 0.6106 150 7 -8.96 -1.1143 MIMAT0005030 dme-miR-1017 2768995 CG33291 ccuacucaaacccauCUCGAAAg ||||||| uuuaauuuaaucucuGAGCUUUu 2 9 78 100 [dm3:3L:21659198-21659220:+] 0.6106 140 7 -8.27 -1.2079

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score CG43980 RAID00106906 dme-miR-982-5p miRNA MIMAT0005498 CG43980 mRNA 2768995 Prediction 0.1828 CG43980 RAID00111457 dme-miR-932-5p miRNA MIMAT0005479 CG43980 mRNA 2768995 Prediction 0.1828 CG43980 RAID00165750 dme-miR-309-3p miRNA MIMAT0000401 CG43980 mRNA 2768995 Prediction 0.1828 CG43980 RAID00362541 dme-miR-263a-5p miRNA MIMAT0000319 CG43980 mRNA 2768995 Prediction 0.1828 CG43980 RAID00423251 dme-miR-966-5p miRNA MIMAT0005481 CG43980 mRNA 2768995 Prediction 0.1828 CG43980 RAID00522583 dme-miR-277-3p miRNA MIMAT0000338 CG43980 mRNA 2768995 Prediction 0.1828 CG43980 RAID00545347 dme-miR-3-3p miRNA MIMAT0000108 CG43980 mRNA 2768995 Prediction 0.1828 CG43980 RAID00633745 dme-miR-318-3p miRNA MIMAT0000410 CG43980 mRNA 2768995 Prediction 0.1828 CG43980 RAID00769617 dme-miR-981-3p miRNA MIMAT0005497 CG43980 mRNA 2768995 Prediction 0.1828 CG43980 RAID00815216 dme-miR-1007-3p miRNA MIMAT0005020 CG43980 mRNA 2768995 Prediction 0.2202 CG43980 RAID01526195 dme-miR-1016-3p miRNA MIMAT0005029 CG43980 mRNA 2768995 Prediction 0.1828 CG43980 RAID01714034 dme-miR-79-3p miRNA MIMAT0000352 CG43980 mRNA 2768995 Prediction 0.1828 CG43980 RAID01892028 dme-miR-979-3p miRNA MIMAT0005495 CG43980 mRNA 2768995 Prediction 0.1828 CG43980 RAID02267777 dme-miR-1010-3p miRNA MIMAT0005023 CG43980 mRNA 2768995 Prediction 0.1828 CG43980 RAID02415576 dme-miR-282-5p miRNA MIMAT0000346 CG43980 mRNA 2768995 Prediction 0.1828 CG43980 RAID02553243 dme-miR-958-3p miRNA MIMAT0005471 CG43980 mRNA 2768995 Prediction 0.2202 CG43980 RAID02561393 dme-miR-1006-3p miRNA MIMAT0005019 CG43980 mRNA 2768995 Prediction 0.1828 CG43980 RAID02741359 dme-miR-284-3p miRNA MIMAT0000348 CG43980 mRNA 2768995 Prediction 0.1828 CG43980 RAID03070020 dme-miR-993-3p miRNA MIMAT0005512 CG43980 mRNA 2768995 Prediction 0.1828 CG43980 RAID03153461 dme-miR-4-3p miRNA MIMAT0000109 CG43980 mRNA 2768995 Prediction 0.1828 CG43980 RAID03230529 dme-miR-87-3p miRNA MIMAT0000361 CG43980 mRNA 2768995 Prediction 0.1828 CG43980 RAID03267455 dme-miR-970-3p miRNA MIMAT0005486 CG43980 mRNA 2768995 Prediction 0.1828 CG43980 RAID03665620 dme-miR-10-3p miRNA MIMAT0012531 CG43980 mRNA 2768995 Prediction 0.1828 CG43980 RAID03857932 dme-miR-1017-3p miRNA MIMAT0005030 CG43980 mRNA 2768995 Prediction 0.2202 CG43980 RAID03862683 dme-miR-987-5p miRNA MIMAT0005504 CG43980 mRNA 2768995 Prediction 0.1828