DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0015107 cel-miR-71* 173277 tfg-1 cgcuuuuugucuuAUCACUAu |||||:| uuucuccuuuuuuUAGUGGUa 2 9 206 226 [ce6:I:14104402-14104422:+] 0.4914 124 0 -8.19 -0.1712 MIMAT0015115 cel-miR-239b* 173277 tfg-1 aaaaacgUGU-GGUGUUUUCACg ||| :: |||||||| agaggaaACAUUUUCAAAAGUGa 2 16 330 352 [ce6:I:14104526-14104548:+] 0.5000 150 7 -14.41 -0.8603 MIMAT0015119 cel-miR-247* 173277 tfg-1 ccauuaaUCUUUGAAAAGAGAu || : ||||||||| gcgcuggAGCGCCUUUUCUCUu 2 16 140 161 [ce6:I:14104336-14104357:+] 0.4914 155 7 -16.13 -0.2575 MIMAT0005032 cel-miR-1019 173277 tfg-1 gaccuuucGUUACACCUUAA-UGUc | | |||||||| ||| ucucuuuuCCACGUGGAAUUCACAu 2 17 156 180 [ce6:I:14104352-14104376:+] 0.4914 128 0 -11.01 -0.5125 MIMAT0011425 cel-miR-2207 173277 tfg-1 gaAUAUGUGUCAGAGUUAAGUGu | | ||| || ||||||| cuUUUCCAC-GU-GGAAUUCACa 2 22 159 179 [ce6:I:14104355-14104375:+] 0.4914 145 7 -13.53 -0.5680 MIMAT0011452 cel-miR-2217 173277 tfg-1 ugGCUU--UGUCCGUGUUCCCAGcu :||| |:|| | ||||||| auUGAAGCAUAGAAAAAAGGGUCua 3 22 287 311 [ce6:I:14104483-14104507:+] 0.5280 140 0 -18.74 -0.2759 MIMAT0000032 cel-miR-60 173277 tfg-1 acuugaucuuuuacacGUAUUAu |||||| uuguuuguuugauuccCAUAAUu 2 8 31 53 [ce6:I:14104227-14104249:+] 0.5480 120 6 -3.62 -0.1511 MIMAT0000302 cel-miR-246 173277 tfg-1 cgaggaugggcuuuGUACAUu |||||| aagggucuaaauuuCAUGUAa 2 8 303 323 [ce6:I:14104499-14104519:+] 0.5000 120 6 -10.84 -0.1332

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 tfg-1; CELE_Y63D3A.5; Y63D3A.5 cel-miR-233 796 827 -GGCGUG-----UACGCGU-----AACGAGUU ||||: |||: || ||||||| GCCGCGAAUCGAAUGU-CAAUCGUUUGCUCAU tfg-1; CELE_Y63D3A.5; Y63D3A.5 cel-miR-240 500 524 UCG-CUUCUAAA---CCCCCGGUCAU || |:||| |||||||| UGCGGGAGAACAAUGGGGGGCCAC-- tfg-1; CELE_Y63D3A.5; Y63D3A.5 cel-miR-243 656 678 CUAUAGG-GCGGCGCUAGCAUGGC |||| || |: :||||:|: --CAUCCACGUAGUCGUCGUGCUU tfg-1; CELE_Y63D3A.5; Y63D3A.5 cel-miR-245 497 524 CUCGAUGAACCU--------CCCCUGGUUA ||: ||| ||||:||| AAGUGCG--GGAGAACAAUGGGGGGCCAC- tfg-1; CELE_Y63D3A.5; Y63D3A.5 cel-miR-248 743 778 ACUCGCAAUAGGC---------------ACGUGCACAUA | ||||| ||:||||||| ----AGGAAUCCGAUUUGACCGACAAAUUGUACGUGUAG tfg-1; CELE_Y63D3A.5; Y63D3A.5 cel-miR-253* 829 852 CCAGUCACAAUCA--CUCCACAC- |||||||| ||| |||| -AUCAGUGUUUUAACGAGUUGUGG tfg-1; CELE_Y63D3A.5; Y63D3A.5 cel-miR-262 503 522 UAGUCUUUUGUAGCUCUUUG- :||:|||| :|:| :| --GGGAGAACAAUGGGGGGCC tfg-1; CELE_Y63D3A.5; Y63D3A.5 cel-miR-265 73 90 UAUGGUGGGAAGGAGGGAGU ||::|||||| |||| --CCCGUCCUUCCCCCCUA- tfg-1; CELE_Y63D3A.5; Y63D3A.5 cel-miR-270 657 678 GAGGUGACGAUGUAGUACGG- ||||| |:||:|||: AUCCACGUAGUCGUCGUGCUU tfg-1; CELE_Y63D3A.5; Y63D3A.5 cel-miR-273 757 778 GUCGGCUGUGU--CAUGCCCGU- |||||| ||||| |:| --ACCGACAAAUUGUACGUGUAG tfg-1; CELE_Y63D3A.5; Y63D3A.5 cel-miR-34 838 870 -GUUGGUCGAU-----UGG---UG-UGACGGA :||| ||:|: || :| |||||| UUAACGAGUUGUGGGAACGUCAGCAACUGCCG tfg-1; CELE_Y63D3A.5; Y63D3A.5 cel-miR-356 808 827 ACUAAACA---AGCGCAACGAGUU ||| |||: ||||||| ----AUGUCAAUCGU-UUGCUCAU tfg-1; CELE_Y63D3A.5; Y63D3A.5 cel-miR-392 654 682 -AGUAGUGUGCACUAGCU------ACUAU ||||| ||||| :||| |||| CUCAUC-CACGUAGUCGUCGUGCUUGAUU tfg-1; CELE_Y63D3A.5; Y63D3A.5 cel-miR-46 851 875 ACUU-CUCUCGCUGA-GGUACUGU ||| | ||| ||| ||: ||| GGAACGUCAGCAACUGCCGAGACU tfg-1; CELE_Y63D3A.5; Y63D3A.5 cel-miR-49 772 795 AGACGUCGAAGA----GCACCACGAA ||:|| ||| :|||||| -GUGUAGAUUCCUUUGUGUGGUGG-- tfg-1; CELE_Y63D3A.5; Y63D3A.5 cel-miR-52 497 520 -UCGUGCCUU--UGUAUACAUGCCCAC ||::|||:| ||| ||| ||| AAGUGCGGGAGAACA-AUGG--GGGG- tfg-1; CELE_Y63D3A.5; Y63D3A.5 cel-miR-53 497 520 -UCGUGCCUU--UGUUUACAUGCCCAC ||::|||:| |||| |: ||| AAGUGCGGGAGAACAA---UGGGGGG- tfg-1; CELE_Y63D3A.5; Y63D3A.5 cel-miR-54 475 507 GAGCCUAAU---------ACUUCUA---AUGCCCAU ||||: ||:||| |:|||| ---UGAUUGAAAUUUUUUUGGAGAAAAGUGCGGGA- tfg-1; CELE_Y63D3A.5; Y63D3A.5 cel-miR-55 462 507 GAGUCGUCU------------UUGAA------------UAUGCCCAU |||:||| ||:|| :|:|||| -CCAGUAGAGAAAUUGAUUGAAAUUUUUUUGGAGAAAAGUGCGGGA- tfg-1; CELE_Y63D3A.5; Y63D3A.5 cel-miR-56 500 520 GAGUCGCCUU--UGUAAUGCCCAU ||||:| ||| |: ||| ---UGCGGGAGAACAAUGGGGGG- tfg-1; CELE_Y63D3A.5; Y63D3A.5 cel-miR-59 619 642 -GUAGUAGGACUAUUUGCU---AAGCU- ||||:||| :|||| ||||| UCAUCGUCC-----GACGACACUUCGAC tfg-1; CELE_Y63D3A.5; Y63D3A.5 cel-miR-74 167 194 ACAUCUGACG-GUA---AAGAACGGU- ||:|| ||| ||||||:|: CGUGGAAUUCACAUCAAUUCUUGUCGU tfg-1; CELE_Y63D3A.5; Y63D3A.5 cel-miR-77 512 532 -ACCUGUCGAUACCGGACUACUU- |||: :|| |||| ||| AUGGGGGGCCA----CUGAAGAAA tfg-1; CELE_Y63D3A.5; Y63D3A.5 cel-miR-789 355 373 UGUUAACCACUGGGUCCGUCCCU- :|||||| :|| ||||| -UGAUUGGU-----GGGAAGGGAA tfg-1; CELE_Y63D3A.5; Y63D3A.5 cel-miR-800 854 873 -GCCGUCUGUUAAAGGCUCAAAC || ||| ||| ||||| ACGUCAG-CAACUGCCGAGA--- tfg-1; CELE_Y63D3A.5; Y63D3A.5 cel-miR-81 693 716 -UGAUCGAAAGUGCUACUAGAGU- :| |||||||| |||||:| CGCCU-CUUUCACGUCGAUCUUAA tfg-1; CELE_Y63D3A.5; Y63D3A.5 cel-miR-82 693 716 -UGACCGAAAGUGCUACUAGAGU- :| |||||||| |||||:| CGCCU-CUUUCACGUCGAUCUUAA tfg-1; CELE_Y63D3A.5; Y63D3A.5 cel-miR-87 798 828 -CGUGUGGACUUUGA-------AACGAGUG- ||: |:| ||| | |||||||: CGCGAAUC-GAAUGUCAAUCGUUUGCUCAUC tfg-1; CELE_Y63D3A.5; Y63D3A.5 cel-miR-233 797 826 GGCGUGUACGC-----GU-----AACGAGUu ||||: || || || ||||||| CCGCGAAT-CGAATGTCAATCGTTTGCTCAt tfg-1; CELE_Y63D3A.5; Y63D3A.5 cel-miR-240 504 525 uCGCUUCUAAACCCCCGGUCAu | ||| | | |||||||| | gGAGAACAATGGGGGGCCACTg tfg-1; CELE_Y63D3A.5; Y63D3A.5 cel-miR-243 654 677 cuaUAGG-GCGGCGCUAGCAUGgc |||| ||: |: :||||:| ctcATCCACGTAGTCGTCGTGCtt tfg-1; CELE_Y63D3A.5; Y63D3A.5 cel-miR-245 505 524 CUCGAUGAACCUCCCCUGGUua ||| || | ||||:||| GAG-AACAATG-GGGGGCCAct tfg-1; CELE_Y63D3A.5; Y63D3A.5 cel-miR-248 746 777 acucGC--AAUAGGC------ACGUGCACAUa || ||: ||| ||:||||||| aatcCGATTTGACCGACAAATTGTACGTGTAg tfg-1; CELE_Y63D3A.5; Y63D3A.5 cel-miR-253* 828 850 ccAGUCAC--AAUCACUCCACAC |||||| ||| ||| |||| aaTCAGTGTTTTAACGAGTTGTG tfg-1; CELE_Y63D3A.5; Y63D3A.5 cel-miR-262 490 509 uagUCUUUUGUAGCUCUUUg |||||| ||:||:| tggAGAAAAGTGCGGGAGAa tfg-1; CELE_Y63D3A.5; Y63D3A.5 cel-miR-265 71 90 uauGGUGGGAAGGAGGGAgu ||::|||||| |||| cccCCGTCCTTCCCCCCTag tfg-1; CELE_Y63D3A.5; Y63D3A.5 cel-miR-271 63 80 uUACGAAAGGGUGGGCCGcu |||:||||| |||| | tATGTTTTCC--CCCGTCct tfg-1; CELE_Y63D3A.5; Y63D3A.5 cel-miR-273 755 776 gucGGCUGUGU--CAUGCCCGU |||||| | ||||| |:| tgaCCGACAAATTGTACGTGTA tfg-1; CELE_Y63D3A.5; Y63D3A.5 cel-miR-34 839 869 gUUGGUCGA-----UUG--GU-G-UGACGGa ||| ||:| ||| || | |||||| tAACGAGTTGTGGGAACGTCAGCAACTGCCg tfg-1; CELE_Y63D3A.5; Y63D3A.5 cel-miR-392 667 690 AGUAGUGUGCACU--AGCUACUau ||:||:::| ||| |||| || TCGTCGTGCTTGATTTCGACGAat tfg-1; CELE_Y63D3A.5; Y63D3A.5 cel-miR-49 771 796 agACGUC----GAAGAGCACCACgaa ||:|| |||: :|||||| cgTGTAGATTCCTTTGTGTGGTGgag tfg-1; CELE_Y63D3A.5; Y63D3A.5 cel-miR-52 486 507 ucgugCCUUUGUAUACAUGCCCac |||:| | | ||:|||| tttttGGAGA-A-AAGTGCGGGag tfg-1; CELE_Y63D3A.5; Y63D3A.5 cel-miR-53 486 507 ucgugCCUUUGUUUACAUGCCCac |||:| ||| ||:|||| tttttGGAGA-AAA-GTGCGGGag tfg-1; CELE_Y63D3A.5; Y63D3A.5 cel-miR-54 488 507 gAGCCUAAUACUUCUAAUGCCCau |:||| ||| | |:|||| tTTGGA----GAAAAGTGCGGGag tfg-1; CELE_Y63D3A.5; Y63D3A.5 cel-miR-55 487 507 gAGUCGUCUUUGAAUAUGCCCau |: | ||||| :|:|||| tTTTGGAGAAA--AGTGCGGGag tfg-1; CELE_Y63D3A.5; Y63D3A.5 cel-miR-56 485 507 gagucgCCU-UUGUAAUGCCCau ||| || | |:|||| ttttttGGAGAAAAGTGCGGGag tfg-1; CELE_Y63D3A.5; Y63D3A.5 cel-miR-59 620 640 GUAGUAGGACUAUUUGCU---AAGCU ||||:||| :|||| ||||| CATCGTCC-----GACGACACTTCGA tfg-1; CELE_Y63D3A.5; Y63D3A.5 cel-miR-77 503 530 aCCUGUCGAUACC-----G-GACUACUU ||| | | |||| | |||| ||| gGGAGAACAATGGGGGGCCACTGAAGAA tfg-1; CELE_Y63D3A.5; Y63D3A.5 cel-miR-789 354 371 uguUAACCACUGGGUCCGUCCCU ||||||| || ||||| gtgATTGGTG-----GGAAGGGA tfg-1; CELE_Y63D3A.5; Y63D3A.5 cel-miR-800 855 875 GCCGUCUGUUAAAGGCUCaaac || ||| ||| | ||||| CGTCAG-CAACTGCCGAGactt tfg-1; CELE_Y63D3A.5; Y63D3A.5 cel-miR-233 819 826 -------------GGCGUG-----UAC-----GCGUAACGAGUU ||||: ||| ||: ||||||| UUGUGUGGUGGAGCCGCGAAUCGAAUGUCAAUCGU-UUGCUCAU tfg-1; CELE_Y63D3A.5; Y63D3A.5 cel-miR-248 770 777 ACUCG----CAAUAGGC---------------ACGUGCACAUA | ||||| ||:||||||| AUCCAUAUAGGAAUCCGAUUUGACCGACAAAUUGUACGUGUAG tfg-1; CELE_Y63D3A.5; Y63D3A.5 cel-miR-356 819 826 -----ACUAAACAAGCGC-----------------AACGAGUU ||:| |||| ||||||| UUGUGUGGUGGAGCCGCGAAUCGAAUGUCAAUCGUUUGCUCAU tfg-1; CELE_Y63D3A.5; Y63D3A.5 cel-miR-87 819 826 -------CGUG-UGGA-CUUUG------------AAACGAGUG |:: :|| ||| | ||||||||: UUGUGUGGUGGAGCCGCGAAUCGAAUGUCAAUCGUUUGCUCAUC

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score tfg-1 RAID01384048 cel-miR-246-3p miRNA MIMAT0000302 tfg-1 mRNA 173277 Prediction 0.1828 tfg-1 RAID02318513 cel-miR-250-3p miRNA MIMAT0000306 tfg-1 mRNA 173277 CLIP-seq 0.5483 tfg-1 RAID02635536 cel-miR-2-3p miRNA MIMAT0000004 tfg-1 mRNA 173277 CLIP-seq//Prediction 0.6308 tfg-1 RAID03654894 cel-miR-43-3p miRNA MIMAT0000014 tfg-1 mRNA 173277 CLIP-seq//Prediction 0.6308 tfg-1 RAID03908475 cel-miR-797-5p miRNA MIMAT0004232 tfg-1 mRNA 173277 CLIP-seq//Prediction 0.6478 tfg-1 RAID04032672 cel-miR-60-3p miRNA MIMAT0000032 tfg-1 mRNA 173277 CLIP-seq//Prediction 0.6308