ubq-1
DNA & RNA Element - microRNA
Mirbase AccmiRNA NameGene IDGene SymbolmiRNA AlignmentAlignmentGene AlignmentmiRNA StartmiRNA EndGene StartGene EndGenome CoordinatesConservationAlign ScoreSeed CatEnergymirSVR Score
MIMAT0015114cel-miR-238*175840ubq-1cgaaacuugcAGGC---UCUUGUAGGu |||| | ||||||| acgcacucuaUCCGAUUACAACAUCCa21588114[ce6:III:5943579-5943605:+]0.81461457-18.39-1.2632
MIMAT0015114cel-miR-238*175840ubq-1cgaaacuugcAGGC---UCUUGUAGGu |||| | ||||||| acgcacucuaUCCGAUUACAACAUCCa21588114[ce6:III:5943579-5943605:+]0.81461457-18.39-1.2632
MIMAT0000313cel-miR-258175840ubq-1uuuuccuaaggAGAGUUUUGg | |||||:| --------gaaUGUCAAAGCc211113[ce6:III:5943492-5943504:+]0.81461260-10.57-0.1219
MIMAT0015241cel-miR-797*175840ubq-1uaAAGUGUCUUUGGUUACUUuu ||: :: | ::|||||| aaUUUCUGUAUUUUAAUGAAcg321245266[ce6:III:5943736-5943757:+]0.66901280-8.07-0.1278
MIMAT0015241cel-miR-797*175840ubq-1uaAAGUGUCUUUGGUUACUUuu ||: :: | ::|||||| aaUUUCUGUAUUUUAAUGAAcg32179100[ce6:III:5943736-5943757:+]0.66901280-8.07-0.1402
MIMAT0015241cel-miR-797*175840ubq-1uaAAGUGUCUUUGGUUACUUuu ||: :: | ::|||||| aaUUUCUGUAUUUUAAUGAAcg321245266[ce6:III:5943736-5943757:+]0.66901280-8.07-0.1271
MIMAT0015241cel-miR-797*175840ubq-1uaAAGUGUCUUUGGUUACUUuu ||: :: | ::|||||| aaUUUCUGUAUUUUAAUGAAcg32179100[ce6:III:5943736-5943757:+]0.66901280-8.07-0.1409
MIMAT0005033cel-miR-1020175840ubq-1gaCUUUCACAGUGUCUUAUUa ||| | | | | |||||| auGAACGAG-CUCUGAAUAAa220260279[ce6:III:5943751-5943770:+]0.66901256-6.95-0.2326
MIMAT0005033cel-miR-1020175840ubq-1gaCUUUCACAGUGUCUUAUUa ||| | | | | |||||| auGAACGAG-CUCUGAAUAAa22094113[ce6:III:5943751-5943770:+]0.66901256-6.95-0.1779
MIMAT0005033cel-miR-1020175840ubq-1gaCUUUCACAGUGUCUUAUUa ||| | | | | |||||| auGAACGAG-CUCUGAAUAAa220260279[ce6:III:5943751-5943770:+]0.66901256-6.95-0.1617
MIMAT0005033cel-miR-1020175840ubq-1gaCUUUCACAGUGUCUUAUUa ||| | | | | |||||| auGAACGAG-CUCUGAAUAAa22094113[ce6:III:5943751-5943770:+]0.66901256-6.95-0.2543
MIMAT0006776cel-miR-1834175840ubq-1aaccuagaguuaccaaCUAGAGa |||||| cucguuauuccuccucGAUCUCc28185207[ce6:III:5943676-5943698:+]0.74181206-8.47-0.1755
MIMAT0006776cel-miR-1834175840ubq-1aaccuagaguuaccaaCUAGAGa |||||| cucguuauuccuccucGAUCUCc281941[ce6:III:5943676-5943698:+]0.74181206-8.47-0.2017
MIMAT0006776cel-miR-1834175840ubq-1aaccuagaguuaccaaCUAGAGa |||||| cucguuauuccuccucGAUCUCc28185207[ce6:III:5943676-5943698:+]0.74181206-8.47-0.1756
MIMAT0006776cel-miR-1834175840ubq-1aaccuagaguuaccaaCUAGAGa |||||| cucguuauuccuccucGAUCUCc281941[ce6:III:5943676-5943698:+]0.74181206-8.47-0.2015
MIMAT0011425cel-miR-2207175840ubq-1gaAUAU-GUGUCAG-AGUUAAGUGu || | |: | | ||||||||| uuUAAAUCGAACCCAUCAAUUCACu222162186[ce6:III:5943653-5943677:+]0.81461517-12.71-1.0622
MIMAT0011425cel-miR-2207175840ubq-1gaauaugugucagAGUUAAGUGu ||||||||| ---aucgaacccaUCAAUUCACu211120[ce6:III:5943658-5943677:+]0.81461507-12.64-1.1946
MIMAT0011425cel-miR-2207175840ubq-1gaauaUGUGUCAGAGUUAAGUGu :| | | | ||||||: aacgaGCUCUGAAUAAAUUCAUu21997119[ce6:III:5943754-5943776:+]0.66901300-9.63-0.1936
MIMAT0011425cel-miR-2207175840ubq-1gaAUAU-GUGUCAG-AGUUAAGUGu || | |: | | ||||||||| uuUAAAUCGAACCCAUCAAUUCACu222162186[ce6:III:5943653-5943677:+]0.81461517-12.71-1.0624
MIMAT0011425cel-miR-2207175840ubq-1gaauaUGUGUCAGAGUUAAGUGu :| | | | ||||||: aacgaGCUCUGAAUAAAUUCAUu219263285[ce6:III:5943754-5943776:+]0.66901300-9.63-0.1762
MIMAT0011425cel-miR-2207175840ubq-1gaauaugugucagAGUUAAGUGu ||||||||| ---aucgaacccaUCAAUUCACu211120[ce6:III:5943658-5943677:+]0.81461507-12.64-1.2365
MIMAT0011425cel-miR-2207175840ubq-1gaauaUGUGUCAGAGUUAAGUGu :| | | | ||||||: aacgaGCUCUGAAUAAAUUCAUu21997119[ce6:III:5943754-5943776:+]0.66901300-9.63-0.1070
MIMAT0011432cel-miR-2209a175840ubq-1acaucacauuggcgaCUAGAGa |||||| ucguuauuccuccucGAUCUCc28186207[ce6:III:5943677-5943698:+]0.74181206-11.19-0.1755
MIMAT0011432cel-miR-2209a175840ubq-1acaucacauuggcgaCUAGAGa |||||| ucguuauuccuccucGAUCUCc282041[ce6:III:5943677-5943698:+]0.74181206-11.19-0.2017
MIMAT0011432cel-miR-2209a175840ubq-1acaucacauuggcgaCUAGAGa |||||| ucguuauuccuccucGAUCUCc28186207[ce6:III:5943677-5943698:+]0.74181206-11.19-0.1756
MIMAT0011432cel-miR-2209a175840ubq-1acaucacauuggcgaCUAGAGa |||||| ucguuauuccuccucGAUCUCc282041[ce6:III:5943677-5943698:+]0.74181206-11.19-0.2015
MIMAT0011452cel-miR-2217175840ubq-1uggcuUUGUCCGUGUUCC-CAGCu |||| || |||| |||| auuacAACAUCCAAAAGGAGUCGa219102125[ce6:III:5943593-5943616:+]0.81461300-17.53-1.2194
MIMAT0011452cel-miR-2217175840ubq-1uggcuUUGUCCGUGUUCC-CAGCu |||| || |||| |||| auuacAACAUCCAAAAGGAGUCGa219102125[ce6:III:5943593-5943616:+]0.81461300-17.53-1.2194
MIMAT0011454cel-miR-2209b175840ubq-1acUUCGU--GUUGGCGAGUAGAGa ||| | |:|| :||||||| aaAAGGAGUCGACACUUCAUCUCg221114137[ce6:III:5943605-5943628:+]0.81461557-22.31-1.1346
MIMAT0011454cel-miR-2209b175840ubq-1acUUCGU--GUUGGCGAGUAGAGa ||| | |:|| :||||||| aaAAGGAGUCGACACUUCAUCUCg221114137[ce6:III:5943605-5943628:+]0.81461557-22.31-1.1347
MIMAT0011460cel-miR-2219175840ubq-1gaagucgaaagggagcGUGAAGc |||||| auccaaaaggagucgaCACUUCa28110132[ce6:III:5943601-5943623:+]0.81461206-12.90-0.1586
MIMAT0011460cel-miR-2219175840ubq-1gaagucgaaagggagcGUGAAGc |||||| auccaaaaggagucgaCACUUCa28110132[ce6:III:5943601-5943623:+]0.81461206-12.90-0.1587
MIMAT0011462cel-miR-2220175840ubq-1gacauuCAGGUGU-UUGUUAAcu ||:|| : ||||||| aucuccGUUCAAGUAACAAUUau317202224[ce6:III:5943693-5943715:+]0.66901350-9.44-0.2297
MIMAT0011462cel-miR-2220175840ubq-1gacauuCAGGUGU-UUGUUAAcu ||:|| : ||||||| aucuccGUUCAAGUAACAAUUau3173658[ce6:III:5943693-5943715:+]0.66901350-9.44-0.2389
MIMAT0011462cel-miR-2220175840ubq-1gacauuCAGGUGU-UUGUUAAcu ||:|| : ||||||| aucuccGUUCAAGUAACAAUUau317202224[ce6:III:5943693-5943715:+]0.66901350-9.44-0.2300
MIMAT0011462cel-miR-2220175840ubq-1gacauuCAGGUGU-UUGUUAAcu ||:|| : ||||||| aucuccGUUCAAGUAACAAUUau3173658[ce6:III:5943693-5943715:+]0.66901350-9.44-0.2387
MIMAT0014446cel-miR-2953-5p175840ubq-1uaaAAGUGCUUGUGAAGACAu |||: || |:|||||| uccUUCGGGA--AUUUCUGUa219236254[ce6:III:5943727-5943745:+]0.66901396-16.78-0.1949
MIMAT0014446cel-miR-2953-5p175840ubq-1uaaAAGUGCUUGUGAAGACAu |||: || |:|||||| uccUUCGGGA--AUUUCUGUa2197088[ce6:III:5943727-5943745:+]0.66901396-16.78-0.2144
MIMAT0014446cel-miR-2953-5p175840ubq-1uaaAAGUGCUUGUGAAGACAu |||: || |:|||||| uccUUCGGGA--AUUUCUGUa219236254[ce6:III:5943727-5943745:+]0.66901396-16.78-0.1955
MIMAT0014446cel-miR-2953-5p175840ubq-1uaaAAGUGCUUGUGAAGACAu |||: || |:|||||| uccUUCGGGA--AUUUCUGUa2197088[ce6:III:5943727-5943745:+]0.66901396-16.78-0.2138
MIMAT0000030cel-miR-58175840ubq-1uaacggcAUGACUUGCUAGAGu | || ||||||| ucguuauUCCUCCUCGAUCUCc216186207[ce6:III:5943677-5943698:+]0.74181437-14.64-1.0970
MIMAT0000030cel-miR-58175840ubq-1uaacggcAUGACUUGCUAGAGu | || ||||||| ucguuauUCCUCCUCGAUCUCc2162041[ce6:III:5943677-5943698:+]0.74181437-14.64-1.1303
MIMAT0000030cel-miR-58175840ubq-1uaacggcAUGACUUGCUAGAGu | || ||||||| ucguuauUCCUCCUCGAUCUCc216186207[ce6:III:5943677-5943698:+]0.74181437-14.64-1.0971
MIMAT0000030cel-miR-58175840ubq-1uaacggcAUGACUUGCUAGAGu | || ||||||| ucguuauUCCUCCUCGAUCUCc2162041[ce6:III:5943677-5943698:+]0.74181437-14.64-1.1302
MIMAT0000053cel-miR-80175840ubq-1agccgaaaguugauuaCUAGAGu |||||| cucguuauuccuccucGAUCUCc28185207[ce6:III:5943676-5943698:+]0.74181206-10.12-0.1722
MIMAT0000053cel-miR-80175840ubq-1agccgaaaguugauuaCUAGAGu |||||| cucguuauuccuccucGAUCUCc281941[ce6:III:5943676-5943698:+]0.74181206-10.12-0.1979
MIMAT0000053cel-miR-80175840ubq-1agccgaaaguugauuaCUAGAGu |||||| cucguuauuccuccucGAUCUCc28185207[ce6:III:5943676-5943698:+]0.74181206-10.12-0.1723
MIMAT0000053cel-miR-80175840ubq-1agccgaaaguugauuaCUAGAGu |||||| cucguuauuccuccucGAUCUCc281941[ce6:III:5943676-5943698:+]0.74181206-10.12-0.1978
MIMAT0000054cel-miR-81175840ubq-1ugaucgaaagugcuaCUAGAGu |||||| ucguuauuccuccucGAUCUCc28186207[ce6:III:5943677-5943698:+]0.74181206-7.23-0.1722
MIMAT0000054cel-miR-81175840ubq-1ugaucgaaagugcuaCUAGAGu |||||| ucguuauuccuccucGAUCUCc282041[ce6:III:5943677-5943698:+]0.74181206-7.23-0.1979
MIMAT0000054cel-miR-81175840ubq-1ugaucgaaagugcuaCUAGAGu |||||| ucguuauuccuccucGAUCUCc28186207[ce6:III:5943677-5943698:+]0.74181206-7.23-0.1723
MIMAT0000054cel-miR-81175840ubq-1ugaucgaaagugcuaCUAGAGu |||||| ucguuauuccuccucGAUCUCc282041[ce6:III:5943677-5943698:+]0.74181206-7.23-0.1978
MIMAT0000055cel-miR-82175840ubq-1ugaccgaaagugcuaCUAGAGu |||||| ucguuauuccuccucGAUCUCc28186207[ce6:III:5943677-5943698:+]0.74181206-7.32-0.1722
MIMAT0000055cel-miR-82175840ubq-1ugaccgaaagugcuaCUAGAGu |||||| ucguuauuccuccucGAUCUCc282041[ce6:III:5943677-5943698:+]0.74181206-7.32-0.1979
MIMAT0000055cel-miR-82175840ubq-1ugaccgaaagugcuaCUAGAGu |||||| ucguuauuccuccucGAUCUCc28186207[ce6:III:5943677-5943698:+]0.74181206-7.32-0.1723
MIMAT0000055cel-miR-82175840ubq-1ugaccgaaagugcuaCUAGAGu |||||| ucguuauuccuccucGAUCUCc282041[ce6:III:5943677-5943698:+]0.74181206-7.32-0.1978
MIMAT0000059cel-miR-86175840ubq-1cugacaccguuucgUAAGUGAau ||||||| aaucgaacccaucaAUUCACUcg310166188[ce6:III:5943657-5943679:+]0.81461250-7.68-0.3551
MIMAT0000059cel-miR-86175840ubq-1cugacaccguuucgUAAGUGAau ||||||| -aucgaacccaucaAUUCACUcg310122[ce6:III:5943658-5943679:+]0.81461250-7.68-0.3527
MIMAT0000059cel-miR-86175840ubq-1cugacaccguuucgUAAGUGAau ||||||| aaucgaacccaucaAUUCACUcg310166188[ce6:III:5943657-5943679:+]0.81461250-7.68-0.3553
MIMAT0000059cel-miR-86175840ubq-1cugacaccguuucgUAAGUGAau ||||||| -aucgaacccaucaAUUCACUcg310122[ce6:III:5943658-5943679:+]0.81461250-7.68-0.4099
MIMAT0000286cel-miR-231175840ubq-1aaGACGGACAACUA-GUGCUCGAau |||: | || || ||||||| uuCUGUAUUUUAAUGAACGAGCUcu323248272[ce6:III:5943739-5943763:+]0.66901450-16.91-0.1763
MIMAT0000286cel-miR-231175840ubq-1aaGACGGACAACUA-GUGCUCGAau |||: | || || ||||||| uuCUGUAUUUUAAUGAACGAGCUcu32382106[ce6:III:5943739-5943763:+]0.66901450-16.91-0.1911
MIMAT0000286cel-miR-231175840ubq-1aaGACGGACAACUA-GUGCUCGAau |||: | || || ||||||| uuCUGUAUUUUAAUGAACGAGCUcu323248272[ce6:III:5943739-5943763:+]0.66901450-16.91-0.1739
MIMAT0000286cel-miR-231175840ubq-1aaGACGGACAACUA-GUGCUCGAau |||: | || || ||||||| uuCUGUAUUUUAAUGAACGAGCUcu32382106[ce6:III:5943739-5943763:+]0.66901450-16.91-0.1937
MIMAT0000304cel-miR-248175840ubq-1acucgcaaUAGGCACGUGCACAUa ||:| | : |||||| cugaauaaAUUCAUUUUCGUGUA-217271293[ce6:III:5943762-5943784:+]0.66901246-9.49-0.2800
MIMAT0000304cel-miR-248175840ubq-1acucgcaaUAGGCACGUGCACAUa ||:| | : |||||| cugaauaaAUUCAUUUUCGUGUA-217105127[ce6:III:5943762-5943784:+]0.66901246-9.49-0.3050
MIMAT0004220cel-miR-785175840ubq-1agaugUGUUUUGUUAAGUGAau || | ||||||||| aucgaACCCAUCAAUUCACUcg318167188[ce6:III:5943658-5943679:+]0.81461410-12.82-0.3523
MIMAT0004220cel-miR-785175840ubq-1agaugUGUUUUGUUAAGUGAau || | ||||||||| aucgaACCCAUCAAUUCACUcg318122[ce6:III:5943658-5943679:+]0.81461410-12.82-0.3498
MIMAT0004220cel-miR-785175840ubq-1agaugUGUUUUGUUAAGUGAau || | ||||||||| aucgaACCCAUCAAUUCACUcg318167188[ce6:III:5943658-5943679:+]0.81461410-12.82-0.3525
MIMAT0004220cel-miR-785175840ubq-1agaugUGUUUUGUUAAGUGAau || | ||||||||| aucgaACCCAUCAAUUCACUcg318122[ce6:III:5943658-5943679:+]0.81461410-12.82-0.4067
MIMAT0004222cel-miR-787175840ubq-1gcuuucUAUGAUU--UUGCUCGAau || :||| |||||||| uucuguAUUUUAAUGAACGAGCUcu318248272[ce6:III:5943739-5943763:+]0.66901400-13.37-0.1763
MIMAT0004222cel-miR-787175840ubq-1gcuuucUAUGAUU--UUGCUCGAau || :||| |||||||| uucuguAUUUUAAUGAACGAGCUcu31882106[ce6:III:5943739-5943763:+]0.66901400-13.37-0.1911
MIMAT0004222cel-miR-787175840ubq-1gcuuucUAUGAUU--UUGCUCGAau || :||| |||||||| uucuguAUUUUAAUGAACGAGCUcu318248272[ce6:III:5943739-5943763:+]0.66901400-13.37-0.1739
MIMAT0004222cel-miR-787175840ubq-1gcuuucUAUGAUU--UUGCUCGAau || :||| |||||||| uucuguAUUUUAAUGAACGAGCUcu31882106[ce6:III:5943739-5943763:+]0.66901400-13.37-0.1937
DNA & RNA Element - miRNAMap
Gene NameMature miRNATarget StartTarget EndmiRNA 3-5AlignmentTarget 5-3
ubq-1; ubia; F25B5.4cel-miR-23181106-AAGACGGACA---ACUAGUGCUCGAAU |||||: ||| |||||||UUUCUGUAUUUUAAUGA--ACGAGCUC-
ubq-1; ubia; F25B5.4cel-miR-5879107-UAACGGCAUG-----ACUUGCUAGAGU ||| |:|||: ||||||| |||AAUUUCUGUAUUUUAAUGAACGAGCUCU
ubq-1; ubia; F25B5.4cel-miR-23182106AAGACGGACAACUA-GUGCUCGAau|||||: | || || |||||||TTCTGTATTTTAATGAACGAGCTct
ubq-1; ubia; F25B5.4cel-miR-5880106UAACGGCAUG-----ACUUGCUAGAGu||| |:|||: ||||||| |||ATTTCTGTATTTTAATGAACGAGCTCt
DNA & RNA Element - RAID2
Gene NameRAID IDInteractor 1Category 1ID 1Interactor 2Category 2ID 2MethodsScore
ubq-1RAID00144559cel-miR-49-3pmiRNAMIMAT0000020ubq-1circRNA175840CLIP-seq0.5483
ubq-1RAID00757112cel-miR-248miRNAMIMAT0000304ubq-1mRNA175840CLIP-seq//Prediction0.6308
ubq-1RAID01088479cel-miR-82-3pmiRNAMIMAT0000055ubq-1mRNA175840CLIP-seq//Prediction0.6478
ubq-1RAID01316550cel-miR-231-3pmiRNAMIMAT0000286ubq-1mRNA175840CLIP-seq//Prediction0.6308
ubq-1RAID01921793cel-miR-81-3pmiRNAMIMAT0000054ubq-1mRNA175840CLIP-seq//Prediction0.6308
ubq-1RAID02186736cel-miR-86-5pmiRNAMIMAT0000059ubq-1mRNA175840CLIP-seq//Prediction0.6308
ubq-1RAID02207284cel-miR-787-3pmiRNAMIMAT0004222ubq-1mRNA175840CLIP-seq//Prediction0.6308
ubq-1RAID02771533cel-miR-80-3pmiRNAMIMAT0000053ubq-1mRNA175840CLIP-seq//Prediction0.6308
ubq-1RAID03273049cel-miR-83-3pmiRNAMIMAT0000056ubq-1circRNA175840CLIP-seq0.5483
ubq-1RAID03833152cel-miR-58a-3pmiRNAMIMAT0000030ubq-1mRNA175840CLIP-seq//Prediction0.6559
ubq-1RAID03905785cel-miR-785-3pmiRNAMIMAT0004220ubq-1mRNA175840CLIP-seq//Prediction0.6308