DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0015119 cel-miR-247* 187472 M110.3 ccauuaaucuuugaAAAGAGAu ||||||| gguuuuccguuuucUUUCUCUc 2 9 89 110 [ce6:II:8214619-8214640:-] 0.4556 140 7 -8.03 -0.4485 MIMAT0006771 cel-miR-1829c 187472 M110.3 auguUGGUAGAACUUAAAG-CGAa |:: ||| :||||| ||| cuguAUUUUCUGUGAUUUCAGCUu 2 20 143 166 [ce6:II:8214563-8214586:-] 0.4556 123 0 -10.74 -0.6576 MIMAT0011438 cel-miR-2211 187472 M110.3 aaAGAGGA-GAUUUAAGA-UGGACu | |||| | || || ||||| uuUAUCCUCCCAACAACUGACCUGg 2 22 66 90 [ce6:II:8214639-8214663:-] 0.4556 120 0 -16.73 -0.6594 MIMAT0011454 cel-miR-2209b 187472 M110.3 acuucguguuggcgAGUAGAGa ||||||| cacucuugucucuaUCAUCUCa 2 9 112 133 [ce6:II:8214596-8214617:-] 0.4556 140 7 -12.98 -1.1278 MIMAT0011458 cel-miR-2218b* 187472 M110.3 agaGUGAUGUUUGAUGUUUAAa || || |||| ||||||| uacCAAUA-AAACGACAAAUUu 2 20 172 192 [ce6:II:8214537-8214557:-] 0.4556 165 7 -10.76 -0.6012 MIMAT0000004 cel-miR-2 187472 M110.3 cguguAGUUUCGACCGACACUAu || : :| ||||||| uuuuuUCUGUAUUUUCUGUGAUu 2 19 137 159 [ce6:II:8214570-8214592:-] 0.4556 142 7 -10.70 -0.9791 MIMAT0000014 cel-miR-43 187472 M110.3 cgcugucguucauuuGACACUAu ||||||| uuuuuucuguauuuuCUGUGAUu 2 9 137 159 [ce6:II:8214570-8214592:-] 0.4556 140 7 -10.88 -0.9731 MIMAT0000021 cel-miR-50 187472 M110.3 ggGUUCUUAUGGUCUGUAUAGu |:| || ::: || |||| aaCGACAAAUUUGUACUUAUCa 2 21 181 202 [ce6:II:8214527-8214548:-] 0.4556 120 0 -6.11 -0.1316 MIMAT0000022 cel-miR-51 187472 M110.3 uuguaccuauccucgAUGCCCAu ||||||| uucacuuguccuccaUACGGGUu 2 9 6 28 [ce6:II:8214701-8214723:-] 0.4556 140 7 -12.10 -0.6307 MIMAT0000023 cel-miR-52 187472 M110.3 ucgugccuuuguauacAUGCCCAc ||||||| guucacuuguccuccaUACGGGUu 2 9 5 28 [ce6:II:8214701-8214724:-] 0.4556 140 7 -12.65 -0.6270 MIMAT0000024 cel-miR-53 187472 M110.3 ucgugccuuuguuuacAUGCCCAc ||||||| guucacuuguccuccaUACGGGUu 2 9 5 28 [ce6:II:8214701-8214724:-] 0.4556 140 7 -12.65 -0.6270 MIMAT0000025 cel-miR-54 187472 M110.3 gagccuaauacuucuaAUGCCCAu ||||||| guucacuuguccuccaUACGGGUu 2 9 5 28 [ce6:II:8214701-8214724:-] 0.4556 140 7 -13.32 -0.6270 MIMAT0000026 cel-miR-55 187472 M110.3 gagucgucuuugaaUAUGCCCAu |||||||| uucacuuguccuccAUACGGGUu 2 10 6 28 [ce6:II:8214701-8214723:-] 0.4556 145 7 -15.37 -0.6307 MIMAT0000028 cel-miR-56 187472 M110.3 gagucgccuuuGUAAUGCCCAu || ||||||| cacuuguccucCA-UACGGGUu 2 12 8 28 [ce6:II:8214701-8214721:-] 0.4556 141 7 -13.88 -0.6022 MIMAT0000047 cel-miR-75 187472 M110.3 acuucggccaaccaUCGAAAUu ||:|||| guacuuaucaauaaAGUUUUAa 2 9 193 214 [ce6:II:8214515-8214536:-] 0.4390 124 0 -6.95 -0.1395 MIMAT0000048 cel-miR-76 187472 M110.3 aguucCGAAGUA-----GUUGUUG-CUu ||||:|| ||||||| || uauuuGCUUUAUCCUCCCAACAACUGAc 2 18 59 86 [ce6:II:8214643-8214670:-] 0.4556 120 0 -13.86 -0.5136 MIMAT0000051 cel-miR-79 187472 M110.3 ucgaAACCAUUGGAUCGAAAUa || ||: ||:|||| guacUUAUCAAUAAAGUUUUAa 2 19 193 214 [ce6:II:8214515-8214536:-] 0.4390 130 0 -6.14 -0.1381 MIMAT0000058 cel-miR-85 187472 M110.3 cgugcuGAAA-AGUUUAUGA-AACAu |||| || | ||| |||| cguuuuCUUUCUCUCACACUCUUGUc 2 19 96 121 [ce6:II:8214608-8214633:-] 0.4556 121 0 -6.47 -0.8178 MIMAT0000059 cel-miR-86 187472 M110.3 cugacaccguuucgUAAGUGAAu :||||||| ----------uacaGUUCACUUg 2 10 1 13 [ce6:II:8214716-8214728:-] 0.4556 141 7 -10.21 -0.6238 MIMAT0000306 cel-miR-250 187472 M110.3 acGGUUGUCAACUGACACUAa :| ::| || ||||||| uuUCUGUA-UUUUCUGUGAUu 2 20 140 159 [ce6:II:8214570-8214589:-] 0.4556 145 7 -10.43 -0.9761 MIMAT0004220 cel-miR-785 187472 M110.3 agauguguuuUGUUAAGUGAAu |||:||||||| ---------uACAGUUCACUUg 2 13 1 13 [ce6:II:8214716-8214728:-] 0.4556 156 7 -15.63 -0.6164 MIMAT0004225 cel-miR-790 187472 M110.3 gcGCCACAAGCGC-UCACG-GUUc ||| ||| :| ||||| ||| uaCGG-GUUGCUGAAGUGCUCAAg 2 21 21 43 [ce6:II:8214686-8214708:-] 0.4556 121 0 -24.66 -0.2870 MIMAT0004227 cel-miR-792 187472 M110.3 agacuuUCAACUUCUCUAAAGUu | || | ||||||| uucuguAUUUUCUGUGAUUUCAg 2 18 141 163 [ce6:II:8214566-8214588:-] 0.4556 145 7 -12.18 -0.6082 MIMAT0004232 cel-miR-797 187472 M110.3 agAAGAGUAACACUAACGACACUAu ||:|: ||| || ||||||| ugUUUUUUCUGUAUUUUCUGUGAUu 2 24 135 159 [ce6:II:8214570-8214594:-] 0.4556 167 7 -16.17 -0.9669

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score M110.3 RAID00039599 cel-miR-51-5p miRNA MIMAT0000022 M110.3 mRNA 187472 Prediction 0.2202 M110.3 RAID00074889 cel-miR-43-3p miRNA MIMAT0000014 M110.3 mRNA 187472 Prediction 0.2202 M110.3 RAID00246862 cel-miR-76-3p miRNA MIMAT0000048 M110.3 mRNA 187472 Prediction 0.1828 M110.3 RAID00457582 cel-miR-53-5p miRNA MIMAT0000024 M110.3 mRNA 187472 Prediction 0.2202 M110.3 RAID00597228 cel-miR-790-5p miRNA MIMAT0004225 M110.3 mRNA 187472 Prediction 0.1828 M110.3 RAID00770354 cel-miR-55-3p miRNA MIMAT0000026 M110.3 mRNA 187472 Prediction 0.2202 M110.3 RAID00881685 cel-miR-792-3p miRNA MIMAT0004227 M110.3 mRNA 187472 Prediction 0.1828 M110.3 RAID01336352 cel-miR-86-5p miRNA MIMAT0000059 M110.3 mRNA 187472 Prediction 0.1828 M110.3 RAID01904793 cel-miR-50-5p miRNA MIMAT0000021 M110.3 mRNA 187472 Prediction 0.1828 M110.3 RAID01962360 cel-miR-250-3p miRNA MIMAT0000306 M110.3 mRNA 187472 Prediction 0.2202 M110.3 RAID01983225 cel-miR-254-3p miRNA MIMAT0000310 M110.3 mRNA 187472 Prediction 0.1828 M110.3 RAID02043019 cel-miR-75-3p miRNA MIMAT0000047 M110.3 mRNA 187472 Prediction 0.1828 M110.3 RAID02080917 cel-miR-79-3p miRNA MIMAT0000051 M110.3 mRNA 187472 Prediction 0.2202 M110.3 RAID02318120 cel-miR-52-5p miRNA MIMAT0000023 M110.3 mRNA 187472 Prediction 0.2202 M110.3 RAID02424712 cel-miR-785-3p miRNA MIMAT0004220 M110.3 mRNA 187472 Prediction 0.1828 M110.3 RAID02581739 cel-miR-54-3p miRNA MIMAT0000025 M110.3 mRNA 187472 Prediction 0.2202 M110.3 RAID03060407 cel-miR-85-3p miRNA MIMAT0000058 M110.3 mRNA 187472 Prediction 0.1828 M110.3 RAID03261386 cel-miR-797-5p miRNA MIMAT0004232 M110.3 mRNA 187472 Prediction 0.2381 M110.3 RAID03733991 cel-miR-56-3p miRNA MIMAT0000028 M110.3 mRNA 187472 Prediction 0.2202 M110.3 RAID03770137 cel-miR-2-3p miRNA MIMAT0000004 M110.3 mRNA 187472 Prediction 0.2202