DNA & RNA Element - miRTarBase Target Gene (Entrez ID) miRTarBase ID miRNA Species (miRNA) Target Gene Species (Target Gene) Experiments Support Type References (PMID) MIRT033536 cel-miR-272 Caenorhabditis elegans ubr-1 171953 Caenorhabditis elegans Sequencing Functional MTI (Weak) 20062054 MIRT032990 cel-miR-800-3p Caenorhabditis elegans ubr-1 171953 Caenorhabditis elegans Sequencing Functional MTI (Weak) 20062054 MIRT032945 cel-miR-1018 Caenorhabditis elegans ubr-1 171953 Caenorhabditis elegans Sequencing Functional MTI (Weak) 20062054 MIRT032765 cel-miR-1818 Caenorhabditis elegans ubr-1 171953 Caenorhabditis elegans Sequencing Functional MTI (Weak) 20062054

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0015114 cel-miR-238* 171953 C32E8.11 cgaAACUUGCAGGCUCUUGUAGGu | | :| | | | ||||||| agaUGGUGCCUAC-ACAACAUCCc 2 22 275 297 [ce6:I:3807604-3807626:-] 0.4927 147 7 -14.20 -0.3683 MIMAT0015119 cel-miR-247* 171953 C32E8.11 ccAUUAAUCUUUGAAAAGAGAu | :|| |:|||||||| auUUGUUUUUCAUUUUUCUCUa 2 21 76 97 [ce6:I:3807804-3807825:-] 0.4385 152 7 -12.17 -1.1863 MIMAT0015119 cel-miR-247* 171953 C32E8.11 ccauuaaucuuUGA-AAAGAGAu ||| ||||||| uuucugugaccACUAUUUCUCUc 2 12 320 342 [ce6:I:3807559-3807581:-] 0.4934 146 7 -8.39 -0.7137 MIMAT0015119 cel-miR-247* 171953 C32E8.11 ccauuaaucuuugaAAAGAGAu ||||||| uauuucucuccgagUUUCUCUu 2 9 333 354 [ce6:I:3807547-3807568:-] 0.4934 140 7 -7.31 -0.7546 MIMAT0000309 cel-miR-253* 171953 C32E8.11 ccagucACAAUCACUCCACAc | ||| | |||||| uauucuUAUUAUUAAGGUGUa 2 16 192 212 [ce6:I:3807689-3807709:-] 0.4172 127 6 -7.39 -0.1197 MIMAT0000328 cel-miR-272 171953 C32E8.11 guuugugggUACGGAUGu :||||||| cucuagaugGUGCCUACa 2 10 271 288 [ce6:I:3807613-3807630:-] 0.4927 141 7 -14.44 -0.4917 MIMAT0000695 cel-miR-353 171953 C32E8.11 uuaUGGUUGUGUACCGUUAAc | |:||: :|| ||||| cgaAACGACG-GUGCCAAUUa 2 19 12 31 [ce6:I:3807870-3807889:-] 0.4453 124 0 -10.35 -0.2447 MIMAT0004235 cel-miR-800 171953 C32E8.11 gccgucuguuAAAGGCUCAAAc | ||||||||| ccacuauuucUCUCCGAGUUUc 2 13 329 350 [ce6:I:3807551-3807572:-] 0.4934 152 7 -12.54 -0.6472 MIMAT0006587 cel-miR-1820 171953 C32E8.11 cuuguagUAGCUUUUUGUUAGUUUu || |||: |||||||| gauucgaAUGUAAAGUCAAUCAAAa 2 19 214 238 [ce6:I:3807663-3807687:-] 0.4172 162 7 -12.87 -0.5295 MIMAT0006769 cel-miR-1829a 171953 C32E8.11 uuaucucuuUAAGGUUACCAAc | |::||||||| cauaauucuACUUUAAUGGUUu 2 14 101 122 [ce6:I:3807779-3807800:-] 0.4385 149 7 -9.08 -1.1604 MIMAT0000015 cel-miR-44 171953 C32E8.11 ucgacuUACACAGAGAUC-AGu || | ||||||| || uuuuucAUUUUUCUCUAGCUCa 2 16 81 102 [ce6:I:3807799-3807820:-] 0.4385 123 0 -11.95 -1.2379 MIMAT0000016 cel-miR-45 171953 C32E8.11 ucgacuUACACAGAGAUC-AGu || | ||||||| || uuuuucAUUUUUCUCUAGCUCa 2 16 81 102 [ce6:I:3807799-3807820:-] 0.4385 123 0 -11.95 -1.2379 MIMAT0000021 cel-miR-50 171953 C32E8.11 ggguucuuauggucuGUAUAGu |||||| cuguuuuuucauuacCAUAUCc 2 8 170 191 [ce6:I:3807710-3807731:-] 0.4172 120 6 -6.89 -0.1583 MIMAT0000031 cel-miR-59 171953 C32E8.11 guAGUAGGACUAUUUGCUAAGCu |:||: |:|: |:|||||| uaUUAUUAAGGUGUAUGAUUCGa 2 22 198 220 [ce6:I:3807681-3807703:-] 0.4172 149 6 -21.40 -0.1563 MIMAT0000034 cel-miR-62 171953 C32E8.11 gacauucgaucuaauGUAUAGu |||||| cuguuuuuucauuacCAUAUCc 2 8 170 191 [ce6:I:3807710-3807731:-] 0.4172 120 6 -10.87 -0.1614 MIMAT0000059 cel-miR-86 171953 C32E8.11 cuGACACCGUUUCGUAAG-UGAAu || | || | |||| |||| uuCUCUAGCUCAUAAUUCUACUUu 2 22 91 114 [ce6:I:3807787-3807810:-] 0.4385 121 0 -7.30 -1.0811 MIMAT0000061 cel-miR-90 171953 C32E8.11 uccccguAAGUUUGUUGUAUAGu ||: | :| |||||| ccuguuuUUUCAUUACCAUAUCc 2 17 169 191 [ce6:I:3807710-3807732:-] 0.4172 124 6 -7.20 -0.1523 MIMAT0000307 cel-miR-251 171953 C32E8.11 uuauucUCGCCGUGGU--GAUGAAuu ||| ||: | |||||| uucucuAGC-UCAUAAUUCUACUUua 3 19 91 115 [ce6:I:3807786-3807810:-] 0.4385 123 0 -9.91 -0.1669 MIMAT0000308 cel-miR-252 171953 C32E8.11 aauggacgccGUGAUGAUGAAua :| | |||||| cucuagcucaUAAUUCUACUUua 3 14 93 115 [ce6:I:3807786-3807808:-] 0.4385 125 0 -9.52 -0.1669 MIMAT0004220 cel-miR-785 171953 C32E8.11 agauguguuuUGUUAAG-UGAAu |:||||| |||| ucucuagcucAUAAUUCUACUUu 2 13 92 114 [ce6:I:3807787-3807809:-] 0.4385 120 0 -11.05 -1.0761 MIMAT0004225 cel-miR-790 171953 C32E8.11 gcgccACAAGC---GCU--CACGGUUc | |||| ||| ||||||| aaaaaUCUUCGAAACGACGGUGCCAAu 2 18 3 29 [ce6:I:3807872-3807898:-] 0.4453 147 7 -16.49 -1.1145 MIMAT0004226 cel-miR-791 171953 C32E8.11 acggaaUAGACGC----CU--CACGGUUu |||| || || ||||||| agaaaaAUCUUCGAAACGACGGUGCCAAu 2 18 1 29 [ce6:I:3807872-3807900:-] 0.6054 143 7 -15.04 -1.2607

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score ubr-1 RAID00002251 cel-miR-785-3p miRNA MIMAT0004220 ubr-1 mRNA 171953 Prediction 0.1828 ubr-1 RAID00494346 cel-miR-790-5p miRNA MIMAT0004225 ubr-1 mRNA 171953 Prediction 0.1828 ubr-1 RAID01364992 cel-miR-800-3p miRNA MIMAT0004235 ubr-1 mRNA 171953 NGS (Next Generation Sequencing) 0.5483 ubr-1 RAID01406341 cel-miR-251 miRNA MIMAT0000307 ubr-1 mRNA 171953 Prediction 0.1828 ubr-1 RAID01576797 cel-miR-1818 miRNA MIMAT0006585 ubr-1 mRNA 171953 NGS (Next Generation Sequencing) 0.5483 ubr-1 RAID01689843 cel-miR-59-3p miRNA MIMAT0000031 ubr-1 mRNA 171953 Prediction 0.1828 ubr-1 RAID01835916 cel-miR-50-5p miRNA MIMAT0000021 ubr-1 mRNA 171953 Prediction 0.1828 ubr-1 RAID02111079 cel-miR-252-5p miRNA MIMAT0000308 ubr-1 mRNA 171953 Prediction 0.1828 ubr-1 RAID02269416 cel-miR-90-3p miRNA MIMAT0000061 ubr-1 mRNA 171953 Prediction 0.1828 ubr-1 RAID02351244 cel-miR-86-5p miRNA MIMAT0000059 ubr-1 mRNA 171953 Prediction 0.1828 ubr-1 RAID02562620 cel-miR-62 miRNA MIMAT0000034 ubr-1 mRNA 171953 Prediction 0.1828 ubr-1 RAID02722275 cel-miR-272 miRNA MIMAT0000328 ubr-1 mRNA 171953 NGS (Next Generation Sequencing) 0.5483 ubr-1 RAID03099362 cel-miR-45-3p miRNA MIMAT0000016 ubr-1 mRNA 171953 Prediction 0.1828 ubr-1 RAID03282280 cel-miR-791-3p miRNA MIMAT0004226 ubr-1 mRNA 171953 Prediction 0.1828 ubr-1 RAID03470529 cel-miR-1018 miRNA MIMAT0005031 ubr-1 mRNA 171953 NGS (Next Generation Sequencing) 0.5483 ubr-1 RAID03957834 cel-miR-44-3p miRNA MIMAT0000015 ubr-1 mRNA 171953 Prediction 0.1828