iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Details
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

UUCD2 ID

IUUC-Ath-007673

Ensembl Protein ID

AT3G13235.2

UniProt Accession

Q1EBV4; Q1EBV4_ARATH

Genbank Protein ID

ABG25069.1; AEE75323.1; AEE75325.1; BAE98897.1

Protein Name

At3g13235; Putative uncharacterized protein At3g13235; Ubiquitin family protein

Genbank Nucleotide ID

BT025980; CP002686; CP002686; AK226800

Gene Name

DDI1; DNA-damage inducible 1; At3g13235

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT3G13235	AT3G13235.2	AT3G13235.2
AT3G13235	AT3G13235.3	AT3G13235.3

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Post-translational Modifications (PTMs)
dbPPT
Protein Expression/Proteomics
GPMDB

Status

Reviewed

Details

Family	Domain	References (PMIDs)
ULD/UDP/UFD/MUB	MUB	20086187; 21764993; 25320573

Classification

Family	E-value	Score	Start	End
UBD/Alpha-Helix/UBA	0.00011	23.1	375	412
ULD/UDP/UBQ/UBQ_PIM	3.60e-20	72.6	1	75

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

UBD/Alpha-Helix/UBA

   S: 2    ededkleqlveMGFdreealqaLraannnleaAveyLl 39
           e+e k+++lve GF+r+ ++qaL    +n e A+ +L+
   Q: 375  EFEAKIAKLVELGFSRDSVIQALKLFEGNEEQAAGFLF 412
           6899*********************9999998876665 PP

ULD/UDP/UBQ/UBQ_PIM

   S: 1    mkltvktlkgkefelevseddtveelKekiakesgvppeqqkLIyaGkiLkDdttLselgikdgsvvhlvvkksk 75
           m++tv+t  ++ ++l+v++++tve++K++++ es+vp++qq+L+y+G+++ ++++Ls+lg+kd+++++++v++++
   Q: 1    MRITVMTAGEQIITLDVDSQETVENVKALLEVESNVPIQQQQLLYNGNEMGNSDKLSALGVKDDDLLMMMVSNAS 75
           99*********************************************************************9986 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MRITVMTAGE QIITLDVDSQ ETVENVKALL EVESNVPIQQ QQLLYNGNEM GNSDKLSALG 60
VKDDDLLMMM VSNASSGSAT SAAGNDLGMN PDGSALNPAA FQQHIRGDSN LMGQLFQNDP 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GGCTTTTCTT ATAAGCCAGA GTTAACATAA AACCTGAAGT AAAGCCATCT AAGGAAGTCA 60
CAGAGATTCT GATTTATAAA ATTGACCAAA ACAAGTCACA GAGGAGACCC CGGAAACCAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR033322--DDI1
IPR033882--DDI1_N
IPR001995--Peptidase_A2_cat
IPR019103--Peptidase_aspartic_DDI1-type
IPR021109--Peptidase_aspartic_dom
IPR015940--UBA
IPR009060--UBA-like
IPR019956--Ubiquitin
IPR029071--Ubiquitin-rel_dom
IPR000626--Ubiquitin_dom

PROSITE

PS50175--ASP_PROT_RETROV
PS50030--UBA
PS50053--UBIQUITIN_2

Pfam

PF09668--Asp_protease
PF00627--UBA
PF00240--ubiquitin

PRINTS

PR00348--UBIQUITIN

SMART

SM00165--UBA
SM00213--UBQ

Gene Ontology

GO:0005829--C:cytosol
GO:0005634--C:nucleus
GO:0004190--F:aspartic-type endopeptidase activity
GO:0031593--F:polyubiquitin binding
GO:0046686--P:response to cadmium ion

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000989	Aegilops tauschii	67.55	5.00e-161	560.00
IUUC-Aml-001440	Ailuropoda melanoleuca	36.57	1.00e-59	223.00
IUUC-Atr-002722	Amborella trichopoda	71.32	1.00e-153	535.00
IUUC-Apl-003902	Anas platyrhynchos	45.77	2.00e-47	182.00
IUUC-Aca-004811	Anolis carolinensis	46.29	6.00e-57	213.00
IUUC-Aly-006104	Arabidopsis lyrata	80.26	2.00e-32	131.00
IUUC-Ago-007981	Ashbya gossypii	42.27	1.00e-59	223.00
IUUC-Acl-008073	Aspergillus clavatus	38.59	2.00e-64	239.00
IUUC-Afl-008728	Aspergillus flavus	39.04	1.00e-70	259.00
IUUC-Afu-008934	Aspergillus fumigatus	38.01	4.00e-65	241.00
IUUC-Ani-009436	Aspergillus nidulans	36.38	2.00e-66	246.00
IUUC-Ang-009596	Aspergillus niger	39.94	5.00e-53	200.00
IUUC-Aor-009968	Aspergillus oryzae	38.81	5.00e-70	257.00
IUUC-Ate-010376	Aspergillus terreus	38.30	1.00e-61	229.00
IUUC-Ame-011570	Astyanax mexicanus	44.98	4.00e-59	221.00
IUUC-Bgr-012020	Blumeria graminis	40.05	2.00e-71	261.00
IUUC-Bta-012745	Bos taurus	35.90	5.00e-46	177.00
IUUC-Bci-013907	Botrytis cinerea	34.84	7.00e-65	240.00
IUUC-Bdi-014595	Brachypodium distachyon	68.19	3.00e-164	570.00
IUUC-Bol-015258	Brassica oleracea	91.79	0.00e+00	735.00
IUUC-Bra-016740	Brassica rapa	91.06	0.00e+00	724.00
IUUC-Cel-018415	Caenorhabditis elegans	42.05	4.00e-38	151.00
IUUC-Cja-018968	Callithrix jacchus	36.00	3.00e-59	221.00
IUUC-Cfa-020530	Canis familiaris	36.57	2.00e-59	222.00
IUUC-Cpo-022103	Cavia porcellus	46.72	5.00e-48	184.00
IUUC-Cre-022841	Chlamydomonas reinhardtii	42.45	3.00e-73	268.00
IUUC-Csa-023591	Chlorocebus sabaeus	36.18	1.00e-59	224.00
IUUC-Cho-024777	Choloepus hoffmanni	28.78	1.00e-33	136.00
IUUC-Cin-025396	Ciona intestinalis	36.78	2.00e-26	111.00
IUUC-Csv-026270	Ciona savignyi	43.67	1.00e-55	209.00
IUUC-Cgl-026570	Colletotrichum gloeosporioides	45.74	3.00e-53	201.00
IUUC-Cne-026974	Cryptococcus neoformans	39.41	3.00e-61	228.00
IUUC-Cme-027324	Cyanidioschyzon merolae	46.78	6.00e-40	157.00
IUUC-Dre-028030	Danio rerio	45.38	1.00e-57	216.00
IUUC-Dno-029264	Dasypus novemcinctus	36.18	4.00e-59	221.00
IUUC-Dor-030621	Dipodomys ordii	44.26	2.00e-12	66.20
IUUC-Dse-031180	Dothistroma septosporum	26.58	9.00e-14	70.50
IUUC-Dme-032067	Drosophila melanogaster	34.04	8.00e-62	230.00
IUUC-Ete-032664	Echinops telfairi	34.56	3.00e-44	171.00
IUUC-Eca-034133	Equus caballus	42.70	4.00e-41	161.00
IUUC-Eeu-035148	Erinaceus europaeus	34.16	3.00e-41	161.00
IUUC-Fca-035376	Felis catus	36.57	1.00e-59	223.00
IUUC-Fal-037210	Ficedula albicollis	28.23	1.00e-09	56.20
IUUC-Fox-037786	Fusarium oxysporum	40.00	3.00e-56	211.00
IUUC-Gmo-039324	Gadus morhua	37.54	2.00e-59	222.00
IUUC-Ggr-039750	Gaeumannomyces graminis	35.82	1.00e-54	206.00
IUUC-Gga-040917	Gallus gallus	50.00	2.00e-30	124.00
IUUC-Gac-041785	Gasterosteus aculeatus	44.54	4.00e-60	224.00
IUUC-Gma-043134	Glycine max	76.09	2.00e-180	624.00
IUUC-Ggo-044472	Gorilla gorilla	44.98	1.00e-41	163.00
IUUC-Hsa-046783	Homo sapiens	36.47	2.00e-60	225.00
IUUC-Hvu-047222	Hordeum vulgare	69.40	2.00e-162	564.00
IUUC-Itr-048836	Ictidomys tridecemlineatus	45.85	2.00e-56	212.00
IUUC-Kpa-049208	Komagataella pastoris	35.08	5.00e-55	207.00
IUUC-Lch-049953	Latimeria chalumnae	44.98	3.00e-56	213.00
IUUC-Lpe-050925	Leersia perrieri	65.95	2.00e-150	524.00
IUUC-Loc-052009	Lepisosteus oculatus	37.93	1.00e-56	213.00
IUUC-Lma-053305	Leptosphaeria maculans	46.77	1.00e-58	219.00
IUUC-Laf-054229	Loxodonta africana	36.29	3.00e-59	221.00
IUUC-Mcc-054796	Macaca mulatta	36.47	4.00e-60	226.00
IUUC-Meu-055944	Macropus eugenii	31.81	3.00e-43	168.00
IUUC-Mpo-057402	Magnaporthe poae	44.98	2.00e-53	202.00
IUUC-Mla-058983	Melampsora laricipopulina	33.93	7.00e-19	86.30
IUUC-Mga-059910	Meleagris gallopavo	45.41	2.00e-55	208.00
IUUC-Mvi-060225	Microbotryum violaceum	45.41	7.00e-56	210.00
IUUC-Mmr-061679	Microcebus murinus	34.83	1.00e-46	179.00
IUUC-Mdo-062992	Monodelphis domestica	36.57	7.00e-61	227.00
IUUC-Mmu-063187	Mus musculus	36.18	3.00e-59	221.00
IUUC-Mac-064640	Musa acuminata	68.82	5.00e-165	573.00
IUUC-Mpu-066770	Mustela putorius furo	36.97	4.00e-49	187.00
IUUC-Mlu-067295	Myotis lucifugus	35.69	1.00e-42	166.00
IUUC-Nfi-068555	Neosartorya fischeri	39.08	2.00e-64	239.00
IUUC-Ncr-068839	Neurospora crassa	33.04	2.00e-59	222.00
IUUC-Nle-069089	Nomascus leucogenys	35.90	3.00e-60	226.00
IUUC-Opr-070199	Ochotona princeps	34.18	1.00e-48	186.00
IUUC-Ont-072300	Oreochromis niloticus	44.58	6.00e-59	220.00
IUUC-Oan-073421	Ornithorhynchus anatinus	46.29	3.00e-57	214.00
IUUC-Ocu-074510	Oryctolagus cuniculus	44.10	1.00e-45	176.00
IUUC-Oba-075183	Oryza barthii	68.54	9.00e-167	578.00
IUUC-Obr-076044	Oryza brachyantha	69.78	4.00e-158	550.00
IUUC-Ogl-077284	Oryza glaberrima	68.78	4.00e-161	560.00
IUUC-Ogu-078171	Oryza glumaepatula	68.78	5.00e-161	559.00
IUUC-Oin-079871	Oryza indica	69.43	4.00e-163	566.00
IUUC-Olo-080579	Oryza longistaminata	69.67	8.00e-164	568.00
IUUC-Ome-081972	Oryza meridionalis	69.43	7.00e-163	565.00
IUUC-Oni-083027	Oryza nivara	68.78	4.00e-161	560.00
IUUC-Opu-083491	Oryza punctata	69.48	8.00e-163	565.00
IUUC-Oru-084589	Oryza rufipogon	68.78	4.00e-161	560.00
IUUC-Osa-085703	Oryza sativa	68.78	4.00e-161	560.00
IUUC-Ola-086911	Oryzias latipes	41.94	6.00e-24	103.00
IUUC-Olu-087654	Ostreococcus lucimarinus	40.24	8.00e-72	263.00
IUUC-Oga-089146	Otolemur garnettii	34.38	2.00e-41	162.00
IUUC-Oar-089924	Ovis aries	35.90	4.00e-59	221.00
IUUC-Ptr-090938	Pan troglodytes	36.47	2.00e-60	225.00
IUUC-Pan-091767	Papio anubis	36.57	3.00e-60	224.00
IUUC-Psi-093426	Pelodiscus sinensis	36.18	3.00e-60	224.00
IUUC-Pno-094977	Phaeosphaeria nodorum	39.83	2.00e-68	252.00
IUUC-Ppa-095744	Physcomitrella patens	58.99	1.00e-135	475.00
IUUC-Pfo-097404	Poecilia formosa	44.54	5.00e-56	211.00
IUUC-Pab-098128	Pongo abelii	36.47	2.00e-60	225.00
IUUC-Pop-099053	Populus trichocarpa	77.29	4.00e-177	613.00
IUUC-Pca-100554	Procavia capensis	43.23	6.00e-41	160.00
IUUC-Ppe-101690	Prunus persica	76.33	4.00e-177	613.00
IUUC-Pva-102638	Pteropus vampyrus	29.63	9.00e-36	143.00
IUUC-Pgr-103310	Puccinia graminis	62.90	2.00e-12	64.30
IUUC-Ptt-103798	Puccinia triticina	40.56	1.00e-56	213.00
IUUC-Pte-104408	Pyrenophora teres	40.87	7.00e-65	240.00
IUUC-Pyt-104420	Pyrenophora triticirepentis	42.24	2.00e-63	235.00
IUUC-Rno-105333	Rattus norvegicus	36.68	3.00e-58	219.00
IUUC-Sce-106167	Saccharomyces cerevisiae	32.44	1.00e-49	189.00
IUUC-Sha-107599	Sarcophilus harrisii	45.42	2.00e-57	215.00
IUUC-Sja-107968	Schizosaccharomyces japonicus	52.44	3.00e-46	178.00
IUUC-Spo-108130	Schizosaccharomyces pombe	41.95	6.00e-55	206.00
IUUC-Ssl-108671	Sclerotinia sclerotiorum	35.66	5.00e-65	241.00
IUUC-Sit-109819	Setaria italica	69.62	5.00e-171	593.00
IUUC-Sly-110983	Solanum lycopersicum	70.02	2.00e-158	551.00
IUUC-Stu-112218	Solanum tuberosum	72.86	1.00e-164	571.00
IUUC-Sar-113702	Sorex araneus	27.64	3.00e-09	54.30
IUUC-Sbi-114118	Sorghum bicolor	69.21	4.00e-168	583.00
IUUC-Sre-115084	Sporisorium reilianum	39.71	8.00e-62	230.00
IUUC-Ssc-115545	Sus scrofa	36.86	3.00e-59	221.00
IUUC-Tgu-117353	Taeniopygia guttata	45.41	3.00e-55	208.00
IUUC-Tru-117838	Takifugu rubripes	45.38	4.00e-61	228.00
IUUC-Tsy-118783	Tarsius syrichta	46.39	4.00e-37	148.00
IUUC-Tni-120287	Tetraodon nigroviridis	45.85	7.00e-61	227.00
IUUC-Tca-121513	Theobroma cacao	76.57	4.00e-167	580.00
IUUC-Tvi-122402	Trichoderma virens	27.70	4.00e-05	42.00
IUUC-Tae-125471	Triticum aestivum	67.79	1.00e-161	561.00
IUUC-Tur-126159	Triticum urartu	67.07	2.00e-150	524.00
IUUC-Tme-127088	Tuber melanosporum	42.68	9.00e-65	239.00
IUUC-Tbe-127948	Tupaia belangeri	44.98	5.00e-46	177.00
IUUC-Ttr-128560	Tursiops truncatus	36.47	2.00e-59	222.00
IUUC-Uma-129478	Ustilago maydis	44.17	8.00e-48	184.00
IUUC-Vda-129758	Verticillium dahliae	40.07	2.00e-50	192.00
IUUC-Vpa-130132	Vicugna pacos	51.35	1.00e-45	176.00
IUUC-Vvi-131006	Vitis vinifera	74.46	2.00e-167	580.00
IUUC-Xtr-132758	Xenopus tropicalis	45.41	2.00e-57	215.00
IUUC-Xma-133125	Xiphophorus maculatus	44.35	1.00e-54	206.00
IUUC-Yli-134530	Yarrowia lipolytica	32.95	1.00e-56	213.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence