iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Stu-112308

Ensembl Protein ID

PGSC0003DMT400069899

UniProt Accession

M1CLC1; M1CLC1_SOLTU

Protein Name

Eukaryotic translation initiation factor 3 subunit F; eIF-3-epsilon

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
PGSC0003DMG400027182	PGSC0003DMT400069899	PGSC0003DMT400069899
PGSC0003DMG400027182	PGSC0003DMT400069900	PGSC0003DMT400069900

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
DUB/JAMM	39.66	9.00e-51	197.00	IUUC-Hsa-046860

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Solanum tuberosum

Functional Description
(View)

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.

Protein Sequence
(Fasta)

MASSDQTVLQ FSPSSASLSA KVHPLVIFNI CDCFVRRPDQ AERIIGTLLG SVLPDGTVDV 60
RNCYAVPHSE SEDQVALDID YHHNMLSSHQ KVNPKEVIVG WFSTGFGVTG GSALIQEFYS 120

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Nucleotide Sequence
(Fasta)

AGAAGACCCG GCCCAAAACA AAGCTTCACC CGTGTTTTCC AATCCGCAAA ACCCTAGCAA 60
CTTCACTCAC ACACAGTTCT CTCCATCTTA CAGTTCTTCG TATTTTGCTC GCTCACAGTG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0396--Initiation factor
KW-0648--Protein biosynthesis
KW-1185--Reference proteome

Interpro

IPR027531--eIF3f
IPR000555--JAMM/MPN+_dom
IPR024969--Rpn11/EIF3F_C

Pfam

PF01398--JAB
PF13012--MitMem_reg

SMART

SM00232--JAB_MPN

Gene Ontology

GO:0016282--C:eukaryotic 43S preinitiation complex
GO:0033290--C:eukaryotic 48S preinitiation complex
GO:0005852--C:eukaryotic translation initiation factor 3 complex
GO:0003743--F:translation initiation factor activity
GO:0001731--P:formation of translation preinitiation complex
GO:0006446--P:regulation of translational initiation

KEGG

sot:102586073

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001150	Aegilops tauschii	67.12	1.00e-98	352.00
IUUC-Aml-001527	Ailuropoda melanoleuca	39.92	2.00e-54	205.00
IUUC-Atr-002686	Amborella trichopoda	75.62	1.00e-115	407.00
IUUC-Apl-003977	Anas platyrhynchos	38.91	4.00e-44	169.00
IUUC-Aca-004335	Anolis carolinensis	39.62	2.00e-56	211.00
IUUC-Aly-005945	Arabidopsis lyrata	74.23	2.00e-116	410.00
IUUC-Ath-007045	Arabidopsis thaliana	72.85	9.00e-114	401.00
IUUC-Acl-008365	Aspergillus clavatus	35.34	2.00e-42	165.00
IUUC-Afl-008742	Aspergillus flavus	34.98	2.00e-41	161.00
IUUC-Afu-009030	Aspergillus fumigatus	34.98	3.00e-42	164.00
IUUC-Ani-009212	Aspergillus nidulans	34.63	7.00e-41	159.00
IUUC-Ang-009712	Aspergillus niger	34.98	3.00e-41	161.00
IUUC-Aor-009885	Aspergillus oryzae	34.98	4.00e-42	164.00
IUUC-Ate-010315	Aspergillus terreus	34.63	4.00e-40	157.00
IUUC-Ame-010801	Astyanax mexicanus	29.14	5.00e-25	106.00
IUUC-Bgr-011982	Blumeria graminis	34.36	3.00e-40	157.00
IUUC-Bta-012804	Bos taurus	39.92	1.00e-54	205.00
IUUC-Bci-013891	Botrytis cinerea	33.68	2.00e-32	132.00
IUUC-Bdi-014328	Brachypodium distachyon	70.76	3.00e-102	363.00
IUUC-Bol-015446	Brassica oleracea	73.88	5.00e-119	419.00
IUUC-Bra-016862	Brassica rapa	73.54	2.00e-118	417.00
IUUC-Cel-018171	Caenorhabditis elegans	30.17	5.00e-26	110.00
IUUC-Cja-019335	Callithrix jacchus	39.92	3.00e-54	204.00
IUUC-Cfa-020138	Canis familiaris	39.54	5.00e-54	203.00
IUUC-Cpo-022109	Cavia porcellus	37.87	6.00e-44	169.00
IUUC-Cre-022664	Chlamydomonas reinhardtii	42.86	3.00e-61	227.00
IUUC-Csa-023994	Chlorocebus sabaeus	39.92	2.00e-54	204.00
IUUC-Cho-024351	Choloepus hoffmanni	33.99	8.00e-32	129.00
IUUC-Cin-025801	Ciona intestinalis	39.39	8.00e-52	196.00
IUUC-Csv-025805	Ciona savignyi	39.77	2.00e-51	194.00
IUUC-Cgl-026643	Colletotrichum gloeosporioides	31.07	4.00e-32	130.00
IUUC-Cne-026868	Cryptococcus neoformans	34.84	1.00e-24	105.00
IUUC-Cme-027328	Cyanidioschyzon merolae	28.12	8.00e-18	83.20
IUUC-Dre-028085	Danio rerio	40.30	1.00e-55	208.00
IUUC-Dno-030099	Dasypus novemcinctus	39.92	2.00e-54	204.00
IUUC-Dor-030324	Dipodomys ordii	34.98	2.00e-42	165.00
IUUC-Dse-031314	Dothistroma septosporum	35.66	2.00e-42	164.00
IUUC-Dme-031926	Drosophila melanogaster	37.45	8.00e-50	189.00
IUUC-Ete-032569	Echinops telfairi	36.88	5.00e-50	189.00
IUUC-Eca-033502	Equus caballus	38.11	2.00e-48	185.00
IUUC-Eeu-034883	Erinaceus europaeus	33.52	1.00e-21	94.70
IUUC-Fca-035873	Felis catus	39.92	2.00e-54	205.00
IUUC-Fal-036921	Ficedula albicollis	40.68	7.00e-56	209.00
IUUC-Fox-037765	Fusarium oxysporum	29.68	1.00e-25	108.00
IUUC-Fso-038240	Fusarium solani	29.68	2.00e-26	111.00
IUUC-Gmo-038864	Gadus morhua	38.83	7.00e-57	212.00
IUUC-Ggr-039862	Gaeumannomyces graminis	30.56	3.00e-27	114.00
IUUC-Gga-040952	Gallus gallus	40.68	9.00e-56	209.00
IUUC-Gac-041677	Gasterosteus aculeatus	40.75	4.00e-59	220.00
IUUC-Gma-043061	Glycine max	78.20	1.00e-114	404.00
IUUC-Ggo-045591	Gorilla gorilla	39.92	2.00e-54	205.00
IUUC-Hsa-046860	Homo sapiens	39.92	2.00e-54	204.00
IUUC-Hvu-047410	Hordeum vulgare	70.27	2.00e-55	206.00
IUUC-Itr-048211	Ictidomys tridecemlineatus	40.30	5.00e-55	206.00
IUUC-Lch-049410	Latimeria chalumnae	38.42	7.00e-38	149.00
IUUC-Lpe-051102	Leersia perrieri	72.89	1.00e-104	371.00
IUUC-Loc-052016	Lepisosteus oculatus	38.26	1.00e-45	175.00
IUUC-Lma-053157	Leptosphaeria maculans	33.57	1.00e-40	159.00
IUUC-Laf-054568	Loxodonta africana	39.92	3.00e-54	204.00
IUUC-Mcc-054613	Macaca mulatta	39.92	2.00e-54	204.00
IUUC-Mor-057104	Magnaporthe oryzae	29.51	8.00e-27	113.00
IUUC-Mtr-058445	Medicago truncatula	76.74	6.00e-124	435.00
IUUC-Mla-059038	Melampsora laricipopulina	30.92	3.00e-27	114.00
IUUC-Mga-059548	Meleagris gallopavo	39.65	9.00e-47	178.00
IUUC-Mvi-060520	Microbotryum violaceum	26.81	1.00e-14	72.80
IUUC-Mdo-062376	Monodelphis domestica	39.16	1.00e-54	205.00
IUUC-Mmu-063254	Mus musculus	39.92	1.00e-54	205.00
IUUC-Mac-065635	Musa acuminata	67.58	3.00e-104	370.00
IUUC-Mpu-066314	Mustela putorius furo	39.92	2.00e-54	204.00
IUUC-Mlu-067512	Myotis lucifugus	40.30	1.00e-55	209.00
IUUC-Nfi-068262	Neosartorya fischeri	34.98	3.00e-42	164.00
IUUC-Ncr-068872	Neurospora crassa	32.07	2.00e-30	125.00
IUUC-Nle-070118	Nomascus leucogenys	39.92	2.00e-54	205.00
IUUC-Opr-071228	Ochotona princeps	39.65	3.00e-46	177.00
IUUC-Ont-072600	Oreochromis niloticus	39.92	9.00e-59	218.00
IUUC-Oan-073584	Ornithorhynchus anatinus	39.21	9.00e-47	178.00
IUUC-Ocu-074542	Oryctolagus cuniculus	39.92	9.00e-55	206.00
IUUC-Oba-075923	Oryza barthii	72.98	9.00e-109	385.00
IUUC-Obr-076313	Oryza brachyantha	74.39	9.00e-106	375.00
IUUC-Ogl-076932	Oryza glaberrima	72.98	9.00e-109	385.00
IUUC-Ogu-078152	Oryza glumaepatula	72.98	9.00e-109	385.00
IUUC-Oin-079528	Oryza indica	72.98	9.00e-109	385.00
IUUC-Olo-080401	Oryza longistaminata	72.98	9.00e-109	385.00
IUUC-Ome-081553	Oryza meridionalis	72.98	7.00e-109	385.00
IUUC-Oni-082090	Oryza nivara	72.98	3.00e-109	386.00
IUUC-Opu-083583	Oryza punctata	73.33	9.00e-104	368.00
IUUC-Oru-084492	Oryza rufipogon	72.98	9.00e-109	385.00
IUUC-Osa-085383	Oryza sativa	72.98	9.00e-109	385.00
IUUC-Ola-086835	Oryzias latipes	39.92	5.00e-58	216.00
IUUC-Olu-087716	Ostreococcus lucimarinus	34.43	1.00e-35	142.00
IUUC-Oga-088886	Otolemur garnettii	40.30	3.00e-55	207.00
IUUC-Oar-090079	Ovis aries	39.92	9.00e-55	205.00
IUUC-Ptr-091457	Pan troglodytes	39.92	2.00e-54	204.00
IUUC-Pan-092317	Papio anubis	36.26	3.00e-28	117.00
IUUC-Psi-093129	Pelodiscus sinensis	39.27	3.00e-48	184.00
IUUC-Pma-094488	Petromyzon marinus	39.54	1.00e-56	212.00
IUUC-Pno-095049	Phaeosphaeria nodorum	33.57	5.00e-42	163.00
IUUC-Ppa-095341	Physcomitrella patens	60.71	2.00e-96	343.00
IUUC-Pfo-096286	Poecilia formosa	38.41	4.00e-58	216.00
IUUC-Pab-097765	Pongo abelii	39.92	2.00e-54	204.00
IUUC-Pop-099131	Populus trichocarpa	81.05	2.00e-124	437.00
IUUC-Pca-100524	Procavia capensis	33.63	4.00e-31	126.00
IUUC-Ppe-101934	Prunus persica	80.07	5.00e-128	449.00
IUUC-Pva-102577	Pteropus vampyrus	40.30	4.00e-55	207.00
IUUC-Pgr-103521	Puccinia graminis	31.27	1.00e-29	122.00
IUUC-Pte-104304	Pyrenophora teres	34.28	9.00e-43	166.00
IUUC-Pyt-104563	Pyrenophora triticirepentis	34.28	2.00e-42	165.00
IUUC-Rno-105717	Rattus norvegicus	40.30	3.00e-55	207.00
IUUC-Sha-107190	Sarcophilus harrisii	39.00	4.00e-52	197.00
IUUC-Sja-107918	Schizosaccharomyces japonicus	32.50	5.00e-34	136.00
IUUC-Spo-108355	Schizosaccharomyces pombe	35.22	9.00e-37	145.00
IUUC-Smo-109374	Selaginella moellendorffii	66.92	5.00e-105	372.00
IUUC-Sit-110119	Setaria italica	73.58	5.00e-105	372.00
IUUC-Sly-111570	Solanum lycopersicum	88.77	2.00e-130	456.00
IUUC-Sar-113515	Sorex araneus	38.95	1.00e-16	78.20
IUUC-Sbi-114605	Sorghum bicolor	73.96	8.00e-105	372.00
IUUC-Sre-114906	Sporisorium reilianum	38.16	5.00e-40	156.00
IUUC-Tgu-117087	Taeniopygia guttata	39.21	2.00e-46	177.00
IUUC-Tru-117700	Takifugu rubripes	41.06	6.00e-60	223.00
IUUC-Tni-120470	Tetraodon nigroviridis	40.68	8.00e-59	219.00
IUUC-Tca-121109	Theobroma cacao	81.47	1.00e-122	431.00
IUUC-Tre-122095	Trichoderma reesei	29.33	1.00e-25	109.00
IUUC-Tvi-122580	Trichoderma virens	29.33	3.00e-25	108.00
IUUC-Tae-125129	Triticum aestivum	74.06	3.00e-105	373.00
IUUC-Tur-126658	Triticum urartu	64.34	1.00e-94	338.00
IUUC-Tme-127043	Tuber melanosporum	35.34	2.00e-40	158.00
IUUC-Tbe-127927	Tupaia belangeri	39.92	2.00e-54	205.00
IUUC-Ttr-129231	Tursiops truncatus	39.92	6.00e-55	206.00
IUUC-Uma-129578	Ustilago maydis	37.72	1.00e-38	152.00
IUUC-Vda-129730	Verticillium dahliae	30.52	1.00e-32	132.00
IUUC-Vvi-130968	Vitis vinifera	83.10	8.00e-131	458.00
IUUC-Xtr-132203	Xenopus tropicalis	39.16	1.00e-52	198.00
IUUC-Xma-133972	Xiphophorus maculatus	38.78	1.00e-57	214.00
IUUC-Yli-134553	Yarrowia lipolytica	31.60	2.00e-27	114.00
IUUC-Zma-134941	Zea mays	72.45	9.00e-96	342.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence