DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000336 dme-miR-276* 37148 Gint3 gcaUCCUUGAGAUAUGGAGCGAc :||||:|| |||||||||| ccaGGGAAUUCAAUACCUCGCUg 2 21 241 263 [dm3:2R:14547232-14547254:-] 0.6426 184 7 -33.76 -0.4261 MIMAT0000343 dme-miR-280 37148 Gint3 auAGUAAA-GUAUACGUUGCAUUU-AUGu || ||| || | | :|: |||| ||| gcUCCUUUGCAAACG-GAUAUAAACUACu 2 26 1266 1293 [dm3:2R:14546080-14546107:-] 0.5504 126 0 -9.28 -0.7913 MIMAT0005464 dme-miR-iab-4as-3p 37148 Gint3 auUUGCAUAUGA--CUUACAUAGg |:|| | :| | ||||||| gcAGCGCAAUUUGCGCAUGUAUCg 2 21 1001 1024 [dm3:2R:14546471-14546494:-] 0.7456 147 7 -12.61 -0.2779 MIMAT0005481 dme-miR-966 37148 Gint3 ggugugUCG-GGUGUUGGGUGu ||: |: :||||||: -----aAGUGCUUUAACCCAUa 2 16 1 17 [dm3:2R:14546025-14546041:-] 0.5504 130 0 -16.05 -0.6262 MIMAT0005509 dme-miR-991 37148 Gint3 ugaaagguuugauguUGAAAUu |||||| aucaauuauaaacgcACUUUAc 2 8 91 112 [dm3:2R:14545930-14545951:-] 0.5504 120 6 -7.92 -0.1961 MIMAT0005510 dme-miR-992 37148 Gint3 gaaUCAUGGUCUUUGCACAUGa :| ||: ||:|||||| caaGGCACUUUCAAUGUGUACg 2 20 1068 1089 [dm3:2R:14546343-14546361,14546425-14546427:-] 0.6953 139 6 -13.25 -0.1219 MIMAT0005021 dme-miR-1008 37148 Gint3 acAU-UUGUGUU-UUUCGACAcu || | :|:|| |:|||||| cuUAUAUUAUAACAGAGCUGUug 3 20 37 59 [dm3:2R:14545983-14546005:-] 0.5504 137 0 -12.28 -0.1197 MIMAT0012198 dme-miR-2491 37148 Gint3 ucGUUGACGUUUCCGUUGUCGc ||| | ||: |||||||| auCAA--GAAAGAGCAACAGCu 2 21 918 937 [dm3:2R:14546558-14546577:-] 0.7456 157 7 -15.55 -0.2658 MIMAT0012198 dme-miR-2491 37148 Gint3 ucGUUGACGUUUCCGUUGUCGc :|:|| : : ||||||| uuUAGCUUGGUGUCCAACAGCg 2 21 1149 1170 [dm3:2R:14546262-14546283:-] 0.6451 144 7 -16.81 -0.1584 MIMAT0012199 dme-miR-2492 37148 Gint3 aaACUUUC--GAGAGCUGUUUUGUa | || | ||:| |||||| | uaUAAACGCACUUUACACAAAAGAa 2 22 97 121 [dm3:2R:14545921-14545945:-] 0.4712 124 0 -7.42 -0.1446 MIMAT0012202 dme-miR-2494* 37148 Gint3 aaggguuagaccaCGUGAAug |||||| aucaauuauaaacGCACUUua 3 9 1422 1442 [dm3:2R:14545931-14545951:-] 0.5504 120 0 -10.34 -0.1590 MIMAT0012202 dme-miR-2494* 37148 Gint3 aaggguuagaccaCGUGAAug |||||| aucaauuauaaacGCACUUua 3 9 91 111 [dm3:2R:14545931-14545951:-] 0.5504 120 0 -10.34 -0.3274 MIMAT0012206 dme-miR-2496* 37148 Gint3 augcuaccggagAGUGUGUGCGUg |:|:| ||||| auucaaaaucaaUUAUAAACGCAc 2 13 84 107 [dm3:2R:14545935-14545958:-] 0.5504 120 0 -14.33 -0.1586 MIMAT0012212 dme-miR-2499* 37148 Gint3 cguaacgcgacugcagaUGCGUGc |||||| uucaaaaucaauuauaaACGCACu 2 8 1416 1439 [dm3:2R:14545934-14545957:-] 0.5504 120 6 -9.87 -0.2944 MIMAT0012212 dme-miR-2499* 37148 Gint3 cguaacgcgacugcagaUGCGUGc |||||| uucaaaaucaauuauaaACGCACu 2 8 85 108 [dm3:2R:14545934-14545957:-] 0.5504 120 6 -9.87 -0.5419 MIMAT0012215 dme-miR-2500 37148 Gint3 gaCUCCAGGUGUGUGUUUUAGg || ||||| |||||||| cgGAUGUCCA---ACAAAAUCu 2 21 633 651 [dm3:2R:14546844-14546862:-] 0.7456 160 7 -17.34 -0.8201 MIMAT0012215 dme-miR-2500 37148 Gint3 gacuccAGGU-GUGUGUUUUAGg ||:| :|: ||||||| uucaaaUCUAUUAUUCAAAAUCa 2 17 1403 1425 [dm3:2R:14545948-14545970:-] 0.5504 151 7 -10.94 -1.3060 MIMAT0012215 dme-miR-2500 37148 Gint3 gacuccAGGU-GUGUGUUUUAGg ||:| :|: ||||||| uucaaaUCUAUUAUUCAAAAUCa 2 17 72 94 [dm3:2R:14545948-14545970:-] 0.5504 151 7 -10.94 -1.3414 MIMAT0000110 dme-miR-5 37148 Gint3 guAUAGUGUUGCU---AGCAAGGAAa |||: ||:||: |:|| |||| uaUAUU-CAGCGGUAUUUGUCCCUUa 2 22 16 40 [dm3:2R:14546002-14546026:-] 0.5504 126 0 -18.14 -0.1082 MIMAT0000114 dme-miR-9a 37148 Gint3 agUAUGUC-GAUCUAU--UGGUUUCu ||: :| ||| :|: ||||||| guAUGAGGCCUAUGUGCCACCAAAGc 2 22 146 171 [dm3:2R:14547324-14547349:-] 0.6426 151 7 -13.59 -0.2866 MIMAT0000332 dme-miR-274 37148 Gint3 uaaugggcaaucacagccaGUGUUUu |||||| caauuauaaacgcacuuuaCACAAAa 2 8 93 118 [dm3:2R:14545924-14545949:-] 0.4712 120 6 -12.71 -0.1662 MIMAT0000337 dme-miR-276a 37148 Gint3 ucucGUGCCAUACUUCAAGGAu |:| | :||||||| gguuCGCAUCAAAGAGUUCCUc 2 19 458 479 [dm3:2R:14547016-14547037:-] 0.7456 142 7 -11.92 -0.3378 MIMAT0000354 dme-miR-276b 37148 Gint3 ucucGUGCCAUAAUUCAAGGAu |:| | :||||||| gguuCGCAUCAAAGAGUUCCUc 2 19 458 479 [dm3:2R:14547016-14547037:-] 0.7456 142 7 -11.88 -0.3378 MIMAT0000355 dme-miR-210 37148 Gint3 aucggcgacaGUGUGCGUGuu :| |||||| aaaucaauuaUAAACGCACuu 3 12 89 109 [dm3:2R:14545933-14545953:-] 0.5504 123 0 -9.43 -0.2156 MIMAT0000362 dme-miR-263b 37148 Gint3 caCUUAAGA--GGGUCAC-GGUUc |:|||:| |:::||| |||| cuGGAUUUUAGCUUGGUGUCCAAc 2 20 1143 1166 [dm3:2R:14546266-14546289:-] 0.6451 126 0 -16.04 -0.2807 MIMAT0000389 dme-miR-31b 37148 Gint3 guCGAUAAGGCUGUAGAACGGu |:| ||| | |||||||| gaGUUUGUCC-A-AUCUUGCCu 2 21 1110 1129 [dm3:2R:14546303-14546322:-] 0.6451 152 7 -19.15 -0.4476 MIMAT0000392 dme-miR-9c 37148 Gint3 agaugucgaucuuaUGGUUUCu ||||||| gaggccuaugugccACCAAAGc 2 9 150 171 [dm3:2R:14547324-14547345:-] 0.6426 140 7 -12.35 -0.2866 MIMAT0000395 dme-miR-9b 37148 Gint3 guAUGUCGAUUUUA--GUGGUUUCu |: :|| | :| |||||||| uaUGAGGCCUAUGUGCCACCAAAGc 2 22 147 171 [dm3:2R:14547324-14547348:-] 0.6426 148 7 -14.92 -0.2792 MIMAT0000397 dme-miR-125 37148 Gint3 aguguucaaucccagAGUCCCu |||||| aucgauacgcuuuagUCAGGGu 2 8 1021 1042 [dm3:2R:14546453-14546474:-] 0.7456 120 6 -15.71 -0.1144 MIMAT0000400 dme-miR-31a 37148 Gint3 agUCGAUACGGCUGUAGAACGGu ||:| ||:| | |||||||| cgAGUU-UGUCCA-AUCUUGCCu 2 22 1109 1129 [dm3:2R:14546303-14546323:-] 0.6451 161 7 -19.35 -0.4476 MIMAT0000407 dme-miR-315 37148 Gint3 cgAAAGACUCGUUGUUAGUUuu | | | | : | |||||| aaUCUAUUAUUCAAAAUCAAuu 3 21 1407 1428 [dm3:2R:14545945-14545966:-] 0.5504 128 0 -4.90 -0.1326 MIMAT0000407 dme-miR-315 37148 Gint3 cgAAAGACUCGUUGUUAGUUuu | | | | : | |||||| aaUCUAUUAUUCAAAAUCAAuu 3 21 76 97 [dm3:2R:14545945-14545966:-] 0.5504 128 0 -4.90 -0.2796 MIMAT0000408 dme-miR-316 37148 Gint3 gcggUCAUUCGCCUUUUUCUGu || :| : |:||||||| gaugAG-GACUUGGAAAAGACa 2 19 1185 1205 [dm3:2R:14546227-14546247:-] 0.6451 148 7 -14.97 -0.5108 MIMAT0000409 dme-miR-317 37148 Gint3 ugaccUAUGGUGGUCGACACAAGu | | :|:| | ||||||| acgaaAAAAUAUCCGAUGUGUUCg 2 20 1087 1110 [dm3:2R:14546322-14546345:-] 0.6451 155 7 -17.95 -0.5515 MIMAT0005478 dme-miR-964 37148 Gint3 uucAAUUCGAGGGGAUAAGAUu || | ||: :||||| | acuUUCAAAUCUAUUAUUCAAa 2 20 1400 1421 [dm3:2R:14545952-14545973:-] 0.5504 123 0 -6.81 -0.1163 MIMAT0005478 dme-miR-964 37148 Gint3 uucAAUUCGAGGGGAUAAGAUu || | ||: :||||| | acuUUCAAAUCUAUUAUUCAAa 2 20 69 90 [dm3:2R:14545952-14545973:-] 0.5504 123 0 -6.81 -0.2488 MIMAT0005480 dme-miR-965 37148 Gint3 uuccccuuuUCGAUAUGCGAAu | | |||||||| ugcgcauguAUCGAUACGCUUu 2 14 1012 1033 [dm3:2R:14546462-14546483:-] 0.7456 149 7 -10.84 -0.7704 MIMAT0005483 dme-miR-1002 37148 Gint3 agcgggaaacAUAGGUGAUGAAUu ||| |||||||| ugcaaacggaUAUAAACUACUUAa 2 15 1273 1296 [dm3:2R:14546077-14546100:-] 0.5504 154 7 -15.82 -0.9527 MIMAT0005484 dme-miR-968 37148 Gint3 guuGGGAAA---UUACCUA----UGAUGAAu :||||| || |||| ||||||| cgcUCCUUUGCAAACGGAUAUAAACUACUUa 2 22 1265 1295 [dm3:2R:14546078-14546108:-] 0.5504 155 7 -20.37 -1.0209 MIMAT0005485 dme-miR-969 37148 Gint3 uuUUGAACG-----AAUCACCUU-GAg :|||||| |||||||| || ucGACUUGCCCACACUAGUGGAAGCUc 2 20 775 801 [dm3:2R:14546694-14546720:-] 0.7456 122 0 -21.41 -0.6700 MIMAT0005504 dme-miR-987 37148 Gint3 guaguuaggucUGAUAAAUGAAAu |:| ||||||| gagcuguuguuAUUUAUUACUUUc 2 14 1382 1405 [dm3:2R:14545968-14545991:-] 0.5504 145 7 -5.09 -1.0954 MIMAT0005504 dme-miR-987 37148 Gint3 guaguuaggucUGAUAAAUGAAAu |:| ||||||| gagcuguuguuAUUUAUUACUUUc 2 14 51 74 [dm3:2R:14545968-14545991:-] 0.5504 145 7 -5.09 -1.2386

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Gint3 RAID00078055 dme-miR-9c-5p miRNA MIMAT0000392 Gint3 mRNA 37148 Prediction 0.1828 Gint3 RAID00464220 dme-miR-969-5p miRNA MIMAT0005485 Gint3 mRNA 37148 Prediction 0.1828 Gint3 RAID00711389 dme-miR-316-5p miRNA MIMAT0000408 Gint3 mRNA 37148 Prediction 0.1828 Gint3 RAID00765172 dme-miR-9b-5p miRNA MIMAT0000395 Gint3 mRNA 37148 Prediction 0.1828 Gint3 RAID00801160 dme-miR-964-5p miRNA MIMAT0005478 Gint3 mRNA 37148 Prediction 0.1828 Gint3 RAID00829646 dme-miR-987-5p miRNA MIMAT0005504 Gint3 mRNA 37148 Prediction 0.2202 Gint3 RAID01189478 dme-miR-5-5p miRNA MIMAT0000110 Gint3 mRNA 37148 Prediction 0.1828 Gint3 RAID01422535 dme-miR-210-3p miRNA MIMAT0000355 Gint3 mRNA 37148 Prediction 0.1828 Gint3 RAID01574433 dme-miR-125-5p miRNA MIMAT0000397 Gint3 mRNA 37148 Prediction 0.1828 Gint3 RAID01780782 dme-miR-263b-5p miRNA MIMAT0000362 Gint3 mRNA 37148 Prediction 0.1828 Gint3 RAID02072209 dme-miR-31b-5p miRNA MIMAT0000389 Gint3 mRNA 37148 Prediction 0.1828 Gint3 RAID02291516 dme-miR-968-5p miRNA MIMAT0005484 Gint3 mRNA 37148 Prediction 0.1828 Gint3 RAID02324358 dme-miR-276a-3p miRNA MIMAT0000337 Gint3 mRNA 37148 Prediction 0.1828 Gint3 RAID02504708 dme-miR-31a-5p miRNA MIMAT0000400 Gint3 mRNA 37148 Prediction 0.1828 Gint3 RAID02569417 dme-miR-315-5p miRNA MIMAT0000407 Gint3 mRNA 37148 Prediction 0.1828 Gint3 RAID02570412 dme-miR-276b-3p miRNA MIMAT0000354 Gint3 mRNA 37148 Prediction 0.1828 Gint3 RAID02707290 dme-miR-1002-5p miRNA MIMAT0005483 Gint3 mRNA 37148 Prediction 0.1828 Gint3 RAID02840721 dme-miR-317-3p miRNA MIMAT0000409 Gint3 mRNA 37148 Prediction 0.1828 Gint3 RAID02862144 dme-miR-965-3p miRNA MIMAT0005480 Gint3 mRNA 37148 Prediction 0.1828 Gint3 RAID02902477 dme-miR-9a-5p miRNA MIMAT0000114 Gint3 mRNA 37148 Prediction 0.1828 Gint3 RAID03279710 dme-miR-274-5p miRNA MIMAT0000332 Gint3 mRNA 37148 Prediction 0.1828 Gint3 RAID03728295 dme-miR-4-3p miRNA MIMAT0000109 Gint3 mRNA 37148 Prediction 0.1828